Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20070

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS20065 and DZA65_RS20070 overlap by 4 nucleotidesDZA65_RS20070 and DZA65_RS20075 are separated by 365 nucleotidesDZA65_RS20075 and DZA65_RS20080 are separated by 154 nucleotides DZA65_RS20065: DZA65_RS20065 - HlyD family efflux transporter periplasmic adaptor subunit, at 4,349,634 to 4,350,953 _RS20065 DZA65_RS20070: DZA65_RS20070 - efflux RND transporter periplasmic adaptor subunit, at 4,350,950 to 4,351,753 _RS20070 DZA65_RS20075: DZA65_RS20075 - hypothetical protein, at 4,352,119 to 4,352,325 _RS20075 DZA65_RS20080: DZA65_RS20080 - helix-turn-helix transcriptional regulator, at 4,352,480 to 4,353,052 _RS20080 Position (kb) 4350 4351 4352Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 4350.073 kb on + strand, within DZA65_RS20065at 4350.225 kb on + strand, within DZA65_RS20065at 4350.226 kb on - strand, within DZA65_RS20065at 4350.419 kb on + strand, within DZA65_RS20065at 4350.420 kb on - strand, within DZA65_RS20065at 4350.553 kb on + strand, within DZA65_RS20065at 4350.553 kb on + strand, within DZA65_RS20065at 4350.553 kb on + strand, within DZA65_RS20065at 4350.554 kb on - strand, within DZA65_RS20065at 4350.584 kb on + strand, within DZA65_RS20065at 4350.584 kb on + strand, within DZA65_RS20065at 4350.585 kb on - strand, within DZA65_RS20065at 4350.670 kb on - strand, within DZA65_RS20065at 4350.670 kb on - strandat 4350.853 kb on + strandat 4350.854 kb on - strandat 4350.854 kb on - strandat 4350.920 kb on + strandat 4350.920 kb on + strandat 4350.920 kb on + strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4350.921 kb on - strandat 4351.115 kb on - strand, within DZA65_RS20070at 4351.175 kb on - strand, within DZA65_RS20070at 4351.236 kb on + strand, within DZA65_RS20070at 4351.236 kb on + strand, within DZA65_RS20070at 4351.236 kb on + strand, within DZA65_RS20070at 4351.236 kb on + strand, within DZA65_RS20070at 4351.236 kb on + strand, within DZA65_RS20070at 4351.237 kb on - strand, within DZA65_RS20070at 4351.237 kb on - strand, within DZA65_RS20070at 4351.237 kb on - strand, within DZA65_RS20070at 4351.237 kb on - strand, within DZA65_RS20070at 4351.285 kb on + strand, within DZA65_RS20070at 4351.286 kb on - strand, within DZA65_RS20070at 4351.311 kb on + strand, within DZA65_RS20070at 4351.312 kb on - strandat 4351.312 kb on - strand, within DZA65_RS20070at 4351.312 kb on - strand, within DZA65_RS20070at 4351.312 kb on - strand, within DZA65_RS20070at 4351.467 kb on + strand, within DZA65_RS20070at 4351.467 kb on + strand, within DZA65_RS20070at 4351.467 kb on + strand, within DZA65_RS20070at 4351.467 kb on + strand, within DZA65_RS20070at 4351.468 kb on - strand, within DZA65_RS20070at 4351.468 kb on - strand, within DZA65_RS20070at 4351.468 kb on - strand, within DZA65_RS20070at 4351.468 kb on - strand, within DZA65_RS20070at 4351.468 kb on - strand, within DZA65_RS20070at 4351.472 kb on - strand, within DZA65_RS20070at 4351.539 kb on - strand, within DZA65_RS20070at 4351.539 kb on - strand, within DZA65_RS20070at 4351.648 kb on + strand, within DZA65_RS20070at 4351.649 kb on - strand, within DZA65_RS20070at 4351.655 kb on + strand, within DZA65_RS20070at 4351.687 kb on - strandat 4351.687 kb on - strandat 4351.687 kb on - strandat 4351.756 kb on + strandat 4351.757 kb on - strandat 4351.841 kb on + strandat 4351.841 kb on + strandat 4351.842 kb on - strandat 4351.842 kb on - strandat 4351.842 kb on - strandat 4351.842 kb on - strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.853 kb on + strandat 4351.854 kb on - strandat 4351.856 kb on - strandat 4351.856 kb on - strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.885 kb on + strandat 4351.886 kb on - strandat 4351.886 kb on - strandat 4351.886 kb on - strandat 4352.055 kb on + strandat 4352.056 kb on - strandat 4352.056 kb on - strandat 4352.065 kb on + strandat 4352.065 kb on + strandat 4352.065 kb on + strandat 4352.077 kb on - strandat 4352.077 kb on - strandat 4352.086 kb on - strandat 4352.086 kb on - strandat 4352.104 kb on + strandat 4352.121 kb on - strandat 4352.121 kb on - strandat 4352.142 kb on + strand, within DZA65_RS20075at 4352.146 kb on + strand, within DZA65_RS20075at 4352.150 kb on + strand, within DZA65_RS20075at 4352.176 kb on + strand, within DZA65_RS20075at 4352.176 kb on + strand, within DZA65_RS20075at 4352.176 kb on + strand, within DZA65_RS20075at 4352.177 kb on - strand, within DZA65_RS20075at 4352.197 kb on + strand, within DZA65_RS20075at 4352.238 kb on + strand, within DZA65_RS20075at 4352.239 kb on - strand, within DZA65_RS20075at 4352.252 kb on - strand, within DZA65_RS20075at 4352.272 kb on + strand, within DZA65_RS20075at 4352.272 kb on + strand, within DZA65_RS20075at 4352.275 kb on - strand, within DZA65_RS20075at 4352.275 kb on - strand, within DZA65_RS20075at 4352.312 kb on + strandat 4352.318 kb on + strandat 4352.331 kb on + strandat 4352.375 kb on + strandat 4352.395 kb on - strandat 4352.395 kb on - strandat 4352.466 kb on + strandat 4352.525 kb on - strandat 4352.527 kb on + strandat 4352.551 kb on - strand, within DZA65_RS20080at 4352.616 kb on + strand, within DZA65_RS20080at 4352.616 kb on + strand, within DZA65_RS20080at 4352.661 kb on + strand, within DZA65_RS20080at 4352.661 kb on + strand, within DZA65_RS20080at 4352.662 kb on - strand, within DZA65_RS20080at 4352.662 kb on - strand, within DZA65_RS20080at 4352.662 kb on - strand, within DZA65_RS20080at 4352.662 kb on - strand, within DZA65_RS20080at 4352.662 kb on - strand, within DZA65_RS20080at 4352.682 kb on + strand, within DZA65_RS20080at 4352.682 kb on + strand, within DZA65_RS20080at 4352.682 kb on + strand, within DZA65_RS20080at 4352.682 kb on + strand, within DZA65_RS20080at 4352.683 kb on - strand, within DZA65_RS20080at 4352.683 kb on - strand, within DZA65_RS20080at 4352.683 kb on - strand, within DZA65_RS20080at 4352.726 kb on + strand, within DZA65_RS20080at 4352.732 kb on + strand, within DZA65_RS20080at 4352.732 kb on + strand, within DZA65_RS20080at 4352.732 kb on + strand, within DZA65_RS20080at 4352.732 kb on + strand, within DZA65_RS20080at 4352.733 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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4,350,073 + DZA65_RS20065 0.33 -1.0
4,350,225 + DZA65_RS20065 0.45 +0.5
4,350,226 - DZA65_RS20065 0.45 +0.4
4,350,419 + DZA65_RS20065 0.59 +1.4
4,350,420 - DZA65_RS20065 0.60 +0.0
4,350,553 + DZA65_RS20065 0.70 +0.4
4,350,553 + DZA65_RS20065 0.70 +0.2
4,350,553 + DZA65_RS20065 0.70 -0.2
4,350,554 - DZA65_RS20065 0.70 +0.3
4,350,584 + DZA65_RS20065 0.72 +1.4
4,350,584 + DZA65_RS20065 0.72 +0.0
4,350,585 - DZA65_RS20065 0.72 +1.8
4,350,670 - DZA65_RS20065 0.78 +0.3
4,350,670 - +1.0
4,350,853 + +0.7
4,350,854 - +0.0
4,350,854 - +0.5
4,350,920 + -0.4
4,350,920 + +2.3
4,350,920 + +0.7
4,350,921 - +0.3
4,350,921 - -2.2
4,350,921 - +0.3
4,350,921 - -1.3
4,350,921 - +2.0
4,350,921 - -0.6
4,350,921 - -1.5
4,351,115 - DZA65_RS20070 0.21 +0.8
4,351,175 - DZA65_RS20070 0.28 -0.6
4,351,236 + DZA65_RS20070 0.36 -0.4
4,351,236 + DZA65_RS20070 0.36 -1.1
4,351,236 + DZA65_RS20070 0.36 +0.9
4,351,236 + DZA65_RS20070 0.36 -2.2
4,351,236 + DZA65_RS20070 0.36 -0.8
4,351,237 - DZA65_RS20070 0.36 -0.4
4,351,237 - DZA65_RS20070 0.36 -1.0
4,351,237 - DZA65_RS20070 0.36 +0.8
4,351,237 - DZA65_RS20070 0.36 -1.4
4,351,285 + DZA65_RS20070 0.42 +1.6
4,351,286 - DZA65_RS20070 0.42 +0.5
4,351,311 + DZA65_RS20070 0.45 +0.5
4,351,312 - -0.6
4,351,312 - DZA65_RS20070 0.45 -0.6
4,351,312 - DZA65_RS20070 0.45 -1.8
4,351,312 - DZA65_RS20070 0.45 -1.8
4,351,467 + DZA65_RS20070 0.64 +0.4
4,351,467 + DZA65_RS20070 0.64 -1.8
4,351,467 + DZA65_RS20070 0.64 +0.4
4,351,467 + DZA65_RS20070 0.64 -1.0
4,351,468 - DZA65_RS20070 0.64 -0.6
4,351,468 - DZA65_RS20070 0.64 +0.2
4,351,468 - DZA65_RS20070 0.64 +0.6
4,351,468 - DZA65_RS20070 0.64 +1.6
4,351,468 - DZA65_RS20070 0.64 -0.8
4,351,472 - DZA65_RS20070 0.65 +1.3
4,351,539 - DZA65_RS20070 0.73 +0.0
4,351,539 - DZA65_RS20070 0.73 +1.4
4,351,648 + DZA65_RS20070 0.87 +1.7
4,351,649 - DZA65_RS20070 0.87 +0.0
4,351,655 + DZA65_RS20070 0.88 -0.4
4,351,687 - -0.4
4,351,687 - -0.5
4,351,687 - +0.6
4,351,756 + -1.3
4,351,757 - -0.4
4,351,841 + -1.8
4,351,841 + -0.7
4,351,842 - +0.2
4,351,842 - -0.8
4,351,842 - -0.2
4,351,842 - +0.4
4,351,853 + -0.3
4,351,853 + -0.8
4,351,853 + +0.3
4,351,853 + +1.6
4,351,853 + -0.7
4,351,853 + +0.4
4,351,853 + +0.7
4,351,854 - -1.3
4,351,856 - +1.0
4,351,856 - +0.1
4,351,885 + +0.7
4,351,885 + -0.1
4,351,885 + +1.0
4,351,885 + -1.0
4,351,885 + +0.2
4,351,885 + -1.0
4,351,885 + -0.2
4,351,886 - -0.9
4,351,886 - -1.3
4,351,886 - -0.5
4,352,055 + -2.0
4,352,056 - -1.2
4,352,056 - +0.8
4,352,065 + +0.7
4,352,065 + +0.4
4,352,065 + -3.2
4,352,077 - +0.6
4,352,077 - +0.0
4,352,086 - -1.6
4,352,086 - +0.0
4,352,104 + +0.4
4,352,121 - +1.0
4,352,121 - +0.4
4,352,142 + DZA65_RS20075 0.11 -0.4
4,352,146 + DZA65_RS20075 0.13 +0.2
4,352,150 + DZA65_RS20075 0.15 +0.2
4,352,176 + DZA65_RS20075 0.28 -0.2
4,352,176 + DZA65_RS20075 0.28 +0.5
4,352,176 + DZA65_RS20075 0.28 +1.4
4,352,177 - DZA65_RS20075 0.28 +0.8
4,352,197 + DZA65_RS20075 0.38 +0.0
4,352,238 + DZA65_RS20075 0.57 +0.7
4,352,239 - DZA65_RS20075 0.58 +0.4
4,352,252 - DZA65_RS20075 0.64 -0.1
4,352,272 + DZA65_RS20075 0.74 +0.8
4,352,272 + DZA65_RS20075 0.74 -1.0
4,352,275 - DZA65_RS20075 0.75 -2.3
4,352,275 - DZA65_RS20075 0.75 -0.4
4,352,312 + -0.9
4,352,318 + -1.6
4,352,331 + +2.7
4,352,375 + +1.5
4,352,395 - -1.8
4,352,395 - -1.3
4,352,466 + -0.8
4,352,525 - +2.6
4,352,527 + -0.5
4,352,551 - DZA65_RS20080 0.12 -1.0
4,352,616 + DZA65_RS20080 0.24 +1.7
4,352,616 + DZA65_RS20080 0.24 -0.8
4,352,661 + DZA65_RS20080 0.32 -0.6
4,352,661 + DZA65_RS20080 0.32 +1.7
4,352,662 - DZA65_RS20080 0.32 +0.2
4,352,662 - DZA65_RS20080 0.32 -2.1
4,352,662 - DZA65_RS20080 0.32 +0.2
4,352,662 - DZA65_RS20080 0.32 +0.8
4,352,662 - DZA65_RS20080 0.32 +0.0
4,352,682 + DZA65_RS20080 0.35 +1.3
4,352,682 + DZA65_RS20080 0.35 +0.7
4,352,682 + DZA65_RS20080 0.35 -1.8
4,352,682 + DZA65_RS20080 0.35 -1.5
4,352,683 - DZA65_RS20080 0.35 +1.7
4,352,683 - DZA65_RS20080 0.35 +2.7
4,352,683 - DZA65_RS20080 0.35 -1.3
4,352,726 + DZA65_RS20080 0.43 +0.3
4,352,732 + DZA65_RS20080 0.44 -0.5
4,352,732 + DZA65_RS20080 0.44 -1.8
4,352,732 + DZA65_RS20080 0.44 -0.9
4,352,732 + DZA65_RS20080 0.44 +0.3
4,352,733 - +2.3

Or see this region's nucleotide sequence