Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19355

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,185,225	+		DZA65_RS19350	0.18	-0.1
4,185,225	+		DZA65_RS19350	0.18	+2.8
4,185,226	-		DZA65_RS19350	0.18	-0.1
4,185,226	-		DZA65_RS19350	0.18	-1.1
4,185,226	-		DZA65_RS19350	0.18	-0.6
4,185,226	-		DZA65_RS19350	0.18	-0.3
4,185,295	-		DZA65_RS19350	0.26	-1.1
4,185,513	-		DZA65_RS19350	0.52	-0.6
4,185,540	+		DZA65_RS19350	0.55	-0.4
4,185,540	+		DZA65_RS19350	0.55	-0.4
4,185,611	-				+0.9
4,185,611	-				-0.1
4,185,628	-		DZA65_RS19350	0.66	-0.6
4,185,774	-		DZA65_RS19350	0.83	-2.2
4,185,796	-		DZA65_RS19350	0.86	+0.1
4,185,796	-		DZA65_RS19350	0.86	-1.4
4,185,861	+				+0.4
4,185,861	+				-0.6
4,185,861	+				-0.1
4,185,861	+				+0.1
4,185,862	-				+0.6
4,185,862	-				+0.3
4,185,975	+				+0.6
4,185,976	-				+1.2
4,185,976	-				-1.1
4,185,983	+				+0.2
4,185,983	+				+0.2
4,185,984	-				+1.2
4,186,017	+				+0.4
4,186,017	+				+2.2
4,186,018	-				-0.1
4,186,020	+				+0.3
4,186,021	-				-1.2
4,186,021	-				-2.6
4,186,027	+				+0.1
4,186,028	-				-0.1
4,186,093	+				+1.0
4,186,093	+				+0.1
4,186,094	-				-0.0
4,186,094	-				+1.4
4,186,094	-				+0.2
4,186,094	-				-0.9
4,186,188	+				+1.8
4,186,188	+				-2.5
4,186,189	-				-0.0
4,186,189	-				-0.2
4,186,189	-				+2.4
4,186,189	-				-0.3
4,186,198	+				-2.4
4,186,199	-				+1.0
4,186,199	-				+1.4
4,186,219	-		DZA65_RS19355	0.11	+0.7
4,186,228	-		DZA65_RS19355	0.12	-1.0
4,186,228	-		DZA65_RS19355	0.12	+0.2
4,186,232	-		DZA65_RS19355	0.12	-1.9
4,186,254	+		DZA65_RS19355	0.14	+2.4
4,186,308	+		DZA65_RS19355	0.19	+1.0
4,186,353	+		DZA65_RS19355	0.24	-0.2
4,186,356	-		DZA65_RS19355	0.24	-1.2
4,186,381	+		DZA65_RS19355	0.26	-0.0
4,186,381	+		DZA65_RS19355	0.26	-1.2
4,186,383	+		DZA65_RS19355	0.26	-1.1
4,186,383	+		DZA65_RS19355	0.26	-0.2
4,186,383	+		DZA65_RS19355	0.26	+0.4
4,186,469	-		DZA65_RS19355	0.35	+1.7
4,186,498	+		DZA65_RS19355	0.37	-1.2
4,186,498	+		DZA65_RS19355	0.37	-1.0
4,186,513	+		DZA65_RS19355	0.39	-0.4
4,186,588	-		DZA65_RS19355	0.46	-0.5
4,186,600	-		DZA65_RS19355	0.47	-1.6
4,186,629	+		DZA65_RS19355	0.49	-0.6
4,186,630	-		DZA65_RS19355	0.50	-1.2
4,186,674	-		DZA65_RS19355	0.54	+1.3
4,186,674	-		DZA65_RS19355	0.54	-0.9
4,186,677	-		DZA65_RS19355	0.54	+1.3
4,186,677	-		DZA65_RS19355	0.54	-1.5
4,186,772	+		DZA65_RS19355	0.63	-0.6
4,186,773	-		DZA65_RS19355	0.63	+0.5
4,186,773	-		DZA65_RS19355	0.63	+0.7
4,186,773	-		DZA65_RS19355	0.63	-0.3
4,186,773	-		DZA65_RS19355	0.63	-1.1
4,186,773	-		DZA65_RS19355	0.63	-1.3
4,186,780	+		DZA65_RS19355	0.64	-1.0
4,186,847	+		DZA65_RS19355	0.70	-1.9
4,186,865	+		DZA65_RS19355	0.71	-0.0
4,186,865	+		DZA65_RS19355	0.71	-0.3
4,186,866	-		DZA65_RS19355	0.72	-1.7
4,186,872	+		DZA65_RS19355	0.72	-0.4
4,186,872	+		DZA65_RS19355	0.72	-0.9
4,186,872	+		DZA65_RS19355	0.72	-0.7
4,186,873	-		DZA65_RS19355	0.72	-1.4
4,186,873	-		DZA65_RS19355	0.72	+0.4
4,186,873	-		DZA65_RS19355	0.72	+0.2
4,186,873	-		DZA65_RS19355	0.72	-2.6
4,186,873	-		DZA65_RS19355	0.72	-0.5
4,186,904	+		DZA65_RS19355	0.75	-0.6
4,186,905	-		DZA65_RS19355	0.75	+0.4
4,186,968	+		DZA65_RS19355	0.81	+0.6
4,186,973	-		DZA65_RS19355	0.82	-1.4
4,186,998	+		DZA65_RS19355	0.84	-0.7
4,186,999	-		DZA65_RS19355	0.84	-0.9
4,186,999	-		DZA65_RS19355	0.84	+0.4
4,187,003	+		DZA65_RS19355	0.84	+1.2
4,187,003	+		DZA65_RS19355	0.84	-0.6
4,187,003	+		DZA65_RS19355	0.84	-0.2
4,187,003	+		DZA65_RS19355	0.84	+1.0
4,187,004	-		DZA65_RS19355	0.84	+1.1
4,187,007	+				-1.0
4,187,008	-		DZA65_RS19355	0.85	-0.2
4,187,023	-		DZA65_RS19355	0.86	-0.9
4,187,031	+		DZA65_RS19355	0.87	-0.1
4,187,031	+		DZA65_RS19355	0.87	+0.2
4,187,036	-		DZA65_RS19355	0.87	-0.0
4,187,149	-				-0.4
4,187,172	+				-1.0
4,187,205	-				+0.3
4,187,239	-				+0.4
4,187,290	+				+0.2
4,187,291	-				-0.1
4,187,291	-				+0.6
4,187,291	-				+0.4
4,187,292	+				+1.3
4,187,292	+				+1.5
4,187,292	+				-0.1
4,187,292	+				+1.5
4,187,293	-				-0.3
4,187,293	-				-0.7
4,187,293	-				+2.4
4,187,297	+				+1.6
4,187,297	+				-0.6
4,187,298	-				-1.4
4,187,335	+				+0.0
4,187,369	+				+0.3
4,187,421	+				-0.5
4,187,421	+				+0.5
4,187,422	-				+1.1
4,187,422	-				-1.2
4,187,440	+				+0.4
4,187,453	+				+0.1
4,187,454	-				-1.0
4,187,454	-				-1.0
4,187,454	-				-0.5
4,187,454	-				+0.5
4,187,455	+				+2.7
4,187,455	+				-0.0
4,187,455	+				-0.3
4,187,455	+				-0.0
4,187,455	+				+0.4
4,187,455	+				-0.5
4,187,455	+				+1.9
4,187,455	+				+1.0
4,187,456	-				-1.2
4,187,456	-				-1.2
4,187,456	-				+1.0
4,187,456	-				-1.0
4,187,456	-				+0.7
4,187,456	-				+0.5
4,187,456	-				-0.0
4,187,459	+				+1.3
4,187,459	+				-1.9
4,187,459	+				+0.2
4,187,459	+				-1.0
4,187,459	+				-1.2
4,187,459	+				+0.2
4,187,459	+				+1.0
4,187,459	+				-0.8
4,187,459	+				-0.3
4,187,459	+				-0.6
4,187,459	+				+0.3
4,187,459	+				-0.1
4,187,459	+				+1.2
4,187,460	-				+1.0
4,187,460	-				+0.6
4,187,460	-				+1.3
4,187,460	-				+1.5
4,187,460	-				+1.5
4,187,460	-				-0.4
4,187,470	-				-2.3
4,187,998	-				-3.7
4,188,010	-				+1.0
4,188,042	-				+0.4
4,188,042	-				-2.0
4,188,043	+				-2.0
4,188,093	-				+1.2
4,188,093	-				-0.6
4,188,096	+				-1.3
4,188,096	+				+0.6
4,188,096	+				-0.0
4,188,096	+				+1.4
4,188,097	-				+0.4
4,188,115	+				+1.7
4,188,115	+				+1.4
4,188,116	-				+0.6
4,188,118	-				+0.6
4,188,118	-				-1.6
4,188,137	-				+2.2