Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18925

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,086,100	-				+0.4
4,086,112	+				+0.1
4,086,113	-				-0.1
4,086,113	-				-1.1
4,086,146	+				-1.4
4,086,147	-				-2.4
4,086,255	+		DZA65_RS18920	0.14	-2.1
4,086,256	+		DZA65_RS18920	0.14	+1.5
4,086,257	-		DZA65_RS18920	0.15	+0.4
4,086,257	-		DZA65_RS18920	0.15	+0.7
4,086,299	-		DZA65_RS18920	0.19	-0.1
4,086,332	-		DZA65_RS18920	0.22	+0.7
4,086,343	+		DZA65_RS18920	0.23	-2.6
4,086,590	+		DZA65_RS18920	0.49	+1.2
4,086,597	-		DZA65_RS18920	0.49	-1.9
4,086,599	+		DZA65_RS18920	0.49	+1.4
4,086,600	-		DZA65_RS18920	0.50	-1.9
4,086,626	+		DZA65_RS18920	0.52	+0.3
4,086,628	+		DZA65_RS18920	0.52	-1.1
4,086,628	+		DZA65_RS18920	0.52	-0.7
4,086,628	+		DZA65_RS18920	0.52	-2.3
4,086,629	-		DZA65_RS18920	0.52	-0.9
4,086,629	-		DZA65_RS18920	0.52	-0.4
4,086,629	-		DZA65_RS18920	0.52	-0.9
4,086,629	-				+0.3
4,086,750	+		DZA65_RS18920	0.65	-1.1
4,086,751	-		DZA65_RS18920	0.65	+0.6
4,087,071	-				-1.7
4,087,083	-				-1.7
4,087,121	-				-1.9
4,087,301	+		DZA65_RS18925	0.17	-0.9
4,087,301	+		DZA65_RS18925	0.17	+1.6
4,087,301	+		DZA65_RS18925	0.17	-0.7
4,087,302	-		DZA65_RS18925	0.17	+0.7
4,087,302	-		DZA65_RS18925	0.17	-2.1
4,087,302	-		DZA65_RS18925	0.17	-0.2
4,087,302	-		DZA65_RS18925	0.17	-0.5
4,087,435	-		DZA65_RS18925	0.27	-0.3
4,087,515	+		DZA65_RS18925	0.33	-1.9
4,087,743	+		DZA65_RS18925	0.51	-1.1
4,087,744	-		DZA65_RS18925	0.51	-0.7
4,087,744	-		DZA65_RS18925	0.51	-1.4
4,087,746	+		DZA65_RS18925	0.51	+0.3
4,087,746	+		DZA65_RS18925	0.51	-0.8
4,087,746	+		DZA65_RS18925	0.51	-0.5
4,087,746	+		DZA65_RS18925	0.51	-1.1
4,087,746	+		DZA65_RS18925	0.51	+1.9
4,087,746	+				+2.7
4,087,746	+		DZA65_RS18925	0.51	-1.3
4,087,746	+		DZA65_RS18925	0.51	+0.1
4,087,746	+		DZA65_RS18925	0.51	-0.7
4,087,746	+		DZA65_RS18925	0.51	+0.2
4,087,746	+		DZA65_RS18925	0.51	-0.7
4,087,747	-		DZA65_RS18925	0.51	-0.5
4,087,747	-		DZA65_RS18925	0.51	+0.4
4,087,747	-		DZA65_RS18925	0.51	-0.8
4,087,747	-		DZA65_RS18925	0.51	+0.9
4,087,780	+				+0.9
4,087,792	+		DZA65_RS18925	0.55	-0.1
4,087,852	+		DZA65_RS18925	0.59	-1.7
4,087,852	+		DZA65_RS18925	0.59	+1.1
4,087,852	+		DZA65_RS18925	0.59	-0.7
4,087,853	-		DZA65_RS18925	0.60	-0.7
4,087,853	-		DZA65_RS18925	0.60	-1.4
4,087,918	+		DZA65_RS18925	0.65	-1.4
4,087,918	+		DZA65_RS18925	0.65	-0.3
4,087,965	+		DZA65_RS18925	0.68	-1.1
4,088,344	+				+2.1
4,088,344	+				-0.7
4,088,345	-				+0.9
4,088,352	+				+1.2
4,088,466	+				-0.5
4,088,466	+				-0.3
4,088,466	+				-0.3
4,088,466	+				+0.9
4,088,466	+				-1.2
4,088,466	+				-0.1
4,088,466	+				-0.7
4,088,466	+				-0.4
4,088,467	-				+0.7
4,088,467	-				+1.5
4,088,467	-				-1.4
4,088,467	-				-0.5
4,088,467	-				+0.0
4,088,467	-				+0.1
4,088,467	-				-1.1
4,088,473	+				+0.9
4,088,473	+				+2.5
4,088,473	+				-1.4
4,088,473	+				+0.9
4,088,473	+				+0.2
4,088,473	+				-0.5
4,088,473	+				+0.2
4,088,473	+				+0.4
4,088,474	-				-0.3
4,088,474	-				+0.4
4,088,474	-				+0.2
4,088,474	-				+0.9
4,088,474	-				-2.1
4,088,474	-				+0.9
4,088,518	+				+2.1
4,088,518	+				-0.1
4,088,519	-				+0.2
4,088,519	-				-1.3
4,088,581	+				+1.2
4,088,581	+				-1.1
4,088,581	+				+0.3
4,088,582	-				-0.1
4,088,582	-				+0.3
4,088,582	-				-0.3
4,088,582	-				-1.3
4,088,582	-				-0.3
4,088,582	-				-0.5
4,088,582	-				-1.7
4,088,582	-				-1.0
4,088,582	-				+0.7
4,088,582	-				+1.9
4,088,582	-				+1.1
4,088,582	-				-1.3
4,088,587	+				+0.9
4,088,593	+				-0.4
4,088,593	+				-0.5
4,088,689	+				+1.6
4,088,765	-		DZA65_RS18930	0.16	-0.7
4,089,083	+		DZA65_RS18930	0.44	+0.9
4,089,083	+		DZA65_RS18930	0.44	+0.7
4,089,084	-		DZA65_RS18930	0.44	-0.7
4,089,128	-		DZA65_RS18930	0.47	-0.1
4,089,128	-		DZA65_RS18930	0.47	-2.4
4,089,212	+		DZA65_RS18930	0.55	-1.4
4,089,212	+		DZA65_RS18930	0.55	-2.6
4,089,212	+		DZA65_RS18930	0.55	-1.1
4,089,212	+		DZA65_RS18930	0.55	-0.8
4,089,212	+		DZA65_RS18930	0.55	-0.1
4,089,212	+		DZA65_RS18930	0.55	+0.1
4,089,212	+		DZA65_RS18930	0.55	-0.7
4,089,212	+		DZA65_RS18930	0.55	+1.4
4,089,212	+		DZA65_RS18930	0.55	-0.1
4,089,212	+		DZA65_RS18930	0.55	+1.3
4,089,212	+		DZA65_RS18930	0.55	+1.3
4,089,213	-		DZA65_RS18930	0.55	+0.6
4,089,213	-		DZA65_RS18930	0.55	+1.5
4,089,213	-		DZA65_RS18930	0.55	+0.1
4,089,213	-		DZA65_RS18930	0.55	-0.3
4,089,213	-		DZA65_RS18930	0.55	+1.1
4,089,213	-		DZA65_RS18930	0.55	+0.9
4,089,213	-		DZA65_RS18930	0.55	-0.1
4,089,295	+		DZA65_RS18930	0.62	-1.1
4,089,295	+				-0.7
4,089,295	+		DZA65_RS18930	0.62	+0.3
4,089,295	+		DZA65_RS18930	0.62	+1.5
4,089,295	+		DZA65_RS18930	0.62	-1.4
4,089,296	-		DZA65_RS18930	0.62	+0.3
4,089,296	-		DZA65_RS18930	0.62	-0.2
4,089,296	-		DZA65_RS18930	0.62	-0.7
4,089,296	-		DZA65_RS18930	0.62	+0.2
4,089,296	-		DZA65_RS18930	0.62	+1.1
4,089,311	+		DZA65_RS18930	0.64	+1.1
4,089,311	+		DZA65_RS18930	0.64	-0.3
4,089,311	+		DZA65_RS18930	0.64	+0.1
4,089,311	+		DZA65_RS18930	0.64	+1.6
4,089,311	+		DZA65_RS18930	0.64	+1.4
4,089,311	+		DZA65_RS18930	0.64	-0.6
4,089,311	+		DZA65_RS18930	0.64	+0.8
4,089,311	+		DZA65_RS18930	0.64	-1.6
4,089,312	-		DZA65_RS18930	0.64	-0.7
4,089,312	-		DZA65_RS18930	0.64	+2.4
4,089,312	-		DZA65_RS18930	0.64	-0.6
4,089,312	-		DZA65_RS18930	0.64	-0.3
4,089,312	-		DZA65_RS18930	0.64	+1.3
4,089,314	+		DZA65_RS18930	0.64	+1.4
4,089,314	+		DZA65_RS18930	0.64	-1.1
4,089,314	+		DZA65_RS18930	0.64	-0.1
4,089,314	+		DZA65_RS18930	0.64	+0.2
4,089,314	+		DZA65_RS18930	0.64	-1.2
4,089,314	+		DZA65_RS18930	0.64	+0.6
4,089,315	-		DZA65_RS18930	0.64	+3.3
4,089,315	-		DZA65_RS18930	0.64	+0.1