Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18885

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,079,020	+		DZA65_RS18880	0.29	-1.7
4,079,020	+		DZA65_RS18880	0.29	-0.7
4,079,024	+		DZA65_RS18880	0.30	-2.9
4,079,024	+		DZA65_RS18880	0.30	+0.1
4,079,024	+		DZA65_RS18880	0.30	-2.6
4,079,024	+		DZA65_RS18880	0.30	+1.3
4,079,024	+		DZA65_RS18880	0.30	-0.9
4,079,024	+		DZA65_RS18880	0.30	-0.4
4,079,025	-		DZA65_RS18880	0.30	+0.3
4,079,025	-		DZA65_RS18880	0.30	+0.6
4,079,025	-		DZA65_RS18880	0.30	-1.7
4,079,130	+		DZA65_RS18880	0.38	-1.3
4,079,131	-		DZA65_RS18880	0.38	+0.0
4,079,131	-		DZA65_RS18880	0.38	+0.1
4,079,238	+		DZA65_RS18880	0.46	+0.7
4,079,238	+		DZA65_RS18880	0.46	+0.6
4,079,239	-		DZA65_RS18880	0.46	+3.4
4,079,239	-		DZA65_RS18880	0.46	-2.9
4,079,239	-		DZA65_RS18880	0.46	-1.4
4,079,244	+		DZA65_RS18880	0.46	-1.0
4,079,382	+		DZA65_RS18880	0.57	+0.2
4,079,382	+		DZA65_RS18880	0.57	-1.7
4,079,383	-		DZA65_RS18880	0.57	-0.9
4,079,427	+		DZA65_RS18880	0.60	-0.3
4,079,427	+		DZA65_RS18880	0.60	+1.7
4,079,427	+		DZA65_RS18880	0.60	+0.1
4,079,427	+		DZA65_RS18880	0.60	+0.3
4,079,428	-		DZA65_RS18880	0.60	-1.6
4,079,428	-		DZA65_RS18880	0.60	-1.4
4,079,428	-		DZA65_RS18880	0.60	+0.5
4,079,428	-		DZA65_RS18880	0.60	-0.9
4,079,428	-		DZA65_RS18880	0.60	+0.0
4,079,428	-		DZA65_RS18880	0.60	-1.1
4,079,428	-		DZA65_RS18880	0.60	-1.0
4,079,546	+		DZA65_RS18880	0.69	-0.1
4,079,546	+		DZA65_RS18880	0.69	-2.1
4,079,649	-				+0.1
4,079,649	-		DZA65_RS18880	0.77	+0.3
4,079,649	-		DZA65_RS18880	0.77	-0.1
4,079,649	-		DZA65_RS18880	0.77	-1.1
4,079,649	-		DZA65_RS18880	0.77	+0.3
4,079,666	+		DZA65_RS18880	0.79	+1.6
4,079,667	-		DZA65_RS18880	0.79	+0.6
4,079,667	-		DZA65_RS18880	0.79	-0.5
4,079,667	-		DZA65_RS18880	0.79	-0.9
4,079,683	-		DZA65_RS18880	0.80	-1.6
4,079,754	+		DZA65_RS18880	0.85	-1.1
4,079,754	+		DZA65_RS18880	0.85	+0.7
4,079,754	+		DZA65_RS18880	0.85	+1.3
4,079,755	-		DZA65_RS18880	0.85	-0.3
4,079,755	-		DZA65_RS18880	0.85	+0.5
4,079,755	-		DZA65_RS18880	0.85	-1.8
4,079,755	-		DZA65_RS18880	0.85	-1.1
4,079,802	+		DZA65_RS18880	0.89	+1.7
4,079,833	-				+1.3
4,079,833	-				-0.4
4,079,833	-				+2.5
4,079,853	+				+1.2
4,079,853	+				-2.3
4,079,854	-				-2.8
4,079,862	+				-1.4
4,079,862	+				+0.9
4,079,863	-				-0.7
4,079,863	-				+1.1
4,079,863	-				+0.5
4,080,056	+		DZA65_RS18885	0.18	-0.1
4,080,057	-		DZA65_RS18885	0.19	+1.6
4,080,057	-		DZA65_RS18885	0.19	-0.9
4,080,184	+		DZA65_RS18885	0.42	-2.3
4,080,205	+		DZA65_RS18885	0.46	+2.5
4,080,212	+		DZA65_RS18885	0.47	-1.4
4,080,212	+		DZA65_RS18885	0.47	-1.7
4,080,212	+		DZA65_RS18885	0.47	+0.5
4,080,212	+		DZA65_RS18885	0.47	+0.0
4,080,212	+		DZA65_RS18885	0.47	-1.4
4,080,212	+		DZA65_RS18885	0.47	+1.3
4,080,213	-		DZA65_RS18885	0.47	-0.6
4,080,213	-		DZA65_RS18885	0.47	+1.0
4,080,312	+		DZA65_RS18885	0.65	+0.3
4,080,312	+		DZA65_RS18885	0.65	+0.2
4,080,313	-		DZA65_RS18885	0.65	+0.6
4,080,313	-		DZA65_RS18885	0.65	-1.7
4,080,373	+		DZA65_RS18885	0.76	-1.4
4,080,373	+		DZA65_RS18885	0.76	+0.8
4,080,374	-		DZA65_RS18885	0.76	+2.5
4,080,374	-		DZA65_RS18885	0.76	-0.6
4,080,478	-				-1.6
4,080,478	-				-0.4
4,080,514	+				+0.2
4,080,514	+				+0.0
4,080,514	+				+0.1
4,080,514	+				+1.5
4,080,515	-				+0.9
4,080,515	-				-1.1
4,080,515	-				+1.1
4,080,515	-				+1.2
4,080,515	-				-1.9
4,080,515	-				-1.7
4,080,533	+				+0.4
4,080,533	+				+0.1
4,080,533	+				+0.2
4,080,533	+				+0.6
4,080,534	-				-0.3
4,080,534	-				-2.9
4,080,625	+		DZA65_RS18890	0.14	-1.2
4,080,626	-		DZA65_RS18890	0.14	-1.8
4,080,770	+		DZA65_RS18890	0.30	-0.3
4,080,800	+		DZA65_RS18890	0.34	+0.3
4,080,816	+		DZA65_RS18890	0.35	+0.1
4,080,816	+		DZA65_RS18890	0.35	-1.4
4,080,816	+		DZA65_RS18890	0.35	+0.9
4,080,816	+		DZA65_RS18890	0.35	-1.9
4,080,817	-		DZA65_RS18890	0.35	+0.1
4,080,817	-		DZA65_RS18890	0.35	-1.1
4,080,817	-		DZA65_RS18890	0.35	-0.4
4,080,817	-		DZA65_RS18890	0.35	-0.2
4,080,817	-		DZA65_RS18890	0.35	-0.4
4,080,820	+		DZA65_RS18890	0.36	-0.3
4,080,820	+		DZA65_RS18890	0.36	-1.0
4,080,821	-		DZA65_RS18890	0.36	+0.2
4,080,821	-		DZA65_RS18890	0.36	-0.2
4,081,001	+		DZA65_RS18890	0.56	-1.7
4,081,001	+		DZA65_RS18890	0.56	+0.1
4,081,001	+		DZA65_RS18890	0.56	-0.7
4,081,002	-		DZA65_RS18890	0.56	-0.7
4,081,002	-		DZA65_RS18890	0.56	-1.4
4,081,002	-		DZA65_RS18890	0.56	-1.6
4,081,044	+		DZA65_RS18890	0.61	-0.7
4,081,377	-				+2.2
4,081,401	-				+0.1
4,081,411	+				-2.4
4,081,411	+				-0.7
4,081,411	+				+0.5
4,081,412	-				+0.7
4,081,412	-				-1.7
4,081,412	-				+0.4
4,081,412	-				+0.2
4,081,412	-				+0.3
4,081,428	+				+2.1
4,081,428	+				-0.7
4,081,428	+				-1.8
4,081,428	+				+0.9
4,081,428	+				+1.0
4,081,428	+				+0.1
4,081,428	+				+1.2
4,081,428	+				+0.1
4,081,428	+				-1.4
4,081,428	+				-0.5
4,081,428	+				-1.4
4,081,428	+				-0.1
4,081,428	+				-0.7
4,081,429	-				+0.3
4,081,429	-				+2.2
4,081,429	-				-0.9
4,081,429	-				-0.1
4,081,429	-				+0.5
4,081,429	-				+0.7
4,081,429	-				+1.3
4,081,429	-				-1.7
4,081,435	-				+0.6
4,081,446	-				-0.5
4,081,446	-				-0.9
4,081,446	-				+0.5
4,081,446	-				-1.1
4,081,462	+				+0.4
4,081,462	+				+0.9
4,081,462	+				-1.1
4,081,468	+				-1.3
4,081,479	+				+0.1
4,081,479	+				-1.5
4,081,479	+				-1.1
4,081,479	+				+1.1
4,081,479	+				+0.3
4,081,479	+				+0.4
4,081,480	-				+0.4
4,081,480	-				-0.7
4,081,480	-				+1.9
4,081,480	-				-0.2
4,081,484	-				+0.1
4,081,485	+				+0.7
4,081,485	+				-0.1
4,081,486	-				-0.7
4,081,502	+				+0.6
4,081,502	+				-1.7
4,081,502	+				+0.9
4,081,502	+				-0.3
4,081,502	+				-0.1
4,081,503	-				-0.4
4,081,503	-				-2.3
4,081,503	-				+1.9