Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18850

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,069,207	+		DZA65_RS18845	0.20	+0.5
4,069,208	-				-0.5
4,069,211	+		DZA65_RS18845	0.20	-0.5
4,069,211	+		DZA65_RS18845	0.20	-0.1
4,069,212	-		DZA65_RS18845	0.20	-1.1
4,069,212	-		DZA65_RS18845	0.20	+0.5
4,069,212	-		DZA65_RS18845	0.20	+0.9
4,069,212	-		DZA65_RS18845	0.20	-0.7
4,069,263	-		DZA65_RS18845	0.25	+2.3
4,069,281	+		DZA65_RS18845	0.27	-0.9
4,069,293	-		DZA65_RS18845	0.28	+0.9
4,069,293	-		DZA65_RS18845	0.28	+2.9
4,069,325	+		DZA65_RS18845	0.31	+0.4
4,069,328	+		DZA65_RS18845	0.32	+0.3
4,069,379	+		DZA65_RS18845	0.37	-2.8
4,069,421	+		DZA65_RS18845	0.41	+0.1
4,069,432	-		DZA65_RS18845	0.42	+0.2
4,069,557	-		DZA65_RS18845	0.55	+0.9
4,069,561	+		DZA65_RS18845	0.55	-1.1
4,069,589	-		DZA65_RS18845	0.58	-0.4
4,069,668	-		DZA65_RS18845	0.66	-0.6
4,069,724	+		DZA65_RS18845	0.71	+0.9
4,069,753	-		DZA65_RS18845	0.74	+0.1
4,069,846	-		DZA65_RS18845	0.84	+0.7
4,069,882	+		DZA65_RS18845	0.87	-0.4
4,069,884	+		DZA65_RS18845	0.87	+0.6
4,069,884	+		DZA65_RS18845	0.87	-0.9
4,069,884	+		DZA65_RS18845	0.87	+0.1
4,069,885	-		DZA65_RS18845	0.87	+0.9
4,069,885	-		DZA65_RS18845	0.87	-2.9
4,070,010	-				+0.3
4,070,012	+				+0.8
4,070,012	+				+1.0
4,070,013	-				-0.3
4,070,014	+				+0.4
4,070,014	+				+0.4
4,070,014	+				-0.6
4,070,014	+				+1.9
4,070,014	+				+0.2
4,070,014	+				+0.7
4,070,015	-				+1.1
4,070,015	-				-0.1
4,070,015	-				+1.5
4,070,021	-				-0.0
4,070,028	+				+0.6
4,070,028	+				+1.2
4,070,032	-				-1.1
4,070,048	+				-0.1
4,070,049	-				-0.1
4,070,049	-				+1.6
4,070,049	-				+0.6
4,070,072	+				-2.3
4,070,084	+				-0.1
4,070,084	+				-0.6
4,070,085	-				+0.4
4,070,085	-				+0.1
4,070,113	+				+0.9
4,070,114	-				+0.7
4,070,117	-				+2.2
4,070,133	+				-1.1
4,070,150	+				-1.3
4,070,150	+				-0.4
4,070,151	-				-1.1
4,070,151	-				+0.6
4,070,178	+				-1.3
4,070,179	-				-1.1
4,070,179	-				-0.2
4,070,233	-				-2.3
4,070,396	+		DZA65_RS18850	0.20	+0.0
4,070,396	+		DZA65_RS18850	0.20	-0.9
4,070,396	+		DZA65_RS18850	0.20	+0.1
4,070,397	-		DZA65_RS18850	0.20	+0.4
4,070,397	-		DZA65_RS18850	0.20	+0.1
4,070,688	+		DZA65_RS18850	0.48	-0.5
4,070,689	-		DZA65_RS18850	0.48	-2.3
4,070,696	-		DZA65_RS18850	0.49	+1.4
4,070,696	-		DZA65_RS18850	0.49	+0.3
4,070,719	+		DZA65_RS18850	0.51	+0.2
4,070,719	+		DZA65_RS18850	0.51	-0.4
4,070,719	+		DZA65_RS18850	0.51	-0.7
4,070,719	+		DZA65_RS18850	0.51	+0.5
4,070,719	+		DZA65_RS18850	0.51	-0.7
4,070,719	+		DZA65_RS18850	0.51	+1.9
4,070,720	-		DZA65_RS18850	0.51	-0.1
4,070,720	-		DZA65_RS18850	0.51	+1.6
4,070,720	-		DZA65_RS18850	0.51	-1.6
4,070,722	+		DZA65_RS18850	0.52	-0.8
4,070,722	+		DZA65_RS18850	0.52	+0.8
4,070,722	+		DZA65_RS18850	0.52	-0.4
4,070,722	+		DZA65_RS18850	0.52	+0.4
4,070,722	+		DZA65_RS18850	0.52	-0.7
4,070,722	+		DZA65_RS18850	0.52	+2.2
4,070,723	-		DZA65_RS18850	0.52	-2.1
4,070,723	-		DZA65_RS18850	0.52	-1.1
4,070,723	-		DZA65_RS18850	0.52	+3.2
4,070,723	-		DZA65_RS18850	0.52	-0.9
4,070,723	-		DZA65_RS18850	0.52	-0.7
4,070,723	-		DZA65_RS18850	0.52	-1.0
4,070,723	-		DZA65_RS18850	0.52	+1.4
4,070,723	-		DZA65_RS18850	0.52	+0.7
4,070,723	-		DZA65_RS18850	0.52	+1.5
4,070,723	-		DZA65_RS18850	0.52	-2.5
4,070,723	-		DZA65_RS18850	0.52	+0.5
4,070,723	-		DZA65_RS18850	0.52	+2.4
4,070,723	-		DZA65_RS18850	0.52	+1.6
4,070,744	+		DZA65_RS18850	0.54	+0.3
4,070,745	-		DZA65_RS18850	0.54	-0.6
4,070,788	-		DZA65_RS18850	0.58	-0.4
4,070,990	+		DZA65_RS18850	0.78	-0.9
4,070,990	+		DZA65_RS18850	0.78	+0.1
4,070,991	-		DZA65_RS18850	0.78	+0.6
4,070,991	-		DZA65_RS18850	0.78	+0.2
4,070,991	-		DZA65_RS18850	0.78	-0.1
4,071,032	+		DZA65_RS18850	0.82	-1.9
4,071,032	+		DZA65_RS18850	0.82	+0.3
4,071,032	+		DZA65_RS18850	0.82	-1.3
4,071,032	+		DZA65_RS18850	0.82	+0.4
4,071,032	+		DZA65_RS18850	0.82	-1.3
4,071,032	+		DZA65_RS18850	0.82	-0.7
4,071,032	+		DZA65_RS18850	0.82	-1.1
4,071,032	+		DZA65_RS18850	0.82	+1.2
4,071,033	-		DZA65_RS18850	0.82	+0.2
4,071,033	-		DZA65_RS18850	0.82	+0.3
4,071,033	-		DZA65_RS18850	0.82	-0.1
4,071,033	-		DZA65_RS18850	0.82	-1.6
4,071,033	-		DZA65_RS18850	0.82	+1.1
4,071,033	-		DZA65_RS18850	0.82	-0.3
4,071,033	-		DZA65_RS18850	0.82	+0.8
4,071,033	-		DZA65_RS18850	0.82	+0.3
4,071,033	-		DZA65_RS18850	0.82	-1.1
4,071,033	-		DZA65_RS18850	0.82	-0.5
4,071,033	-		DZA65_RS18850	0.82	-0.4
4,071,077	+		DZA65_RS18850	0.86	-0.9
4,071,077	+		DZA65_RS18850	0.86	-1.7
4,071,077	+		DZA65_RS18850	0.86	-0.4
4,071,077	+		DZA65_RS18850	0.86	-2.3
4,071,077	+		DZA65_RS18850	0.86	-0.5
4,071,077	+		DZA65_RS18850	0.86	-0.1
4,071,077	+		DZA65_RS18850	0.86	-2.0
4,071,078	-		DZA65_RS18850	0.86	-0.7
4,071,078	-		DZA65_RS18850	0.86	-2.6
4,071,078	-		DZA65_RS18850	0.86	-1.3
4,071,078	-		DZA65_RS18850	0.86	+1.3
4,071,114	-		DZA65_RS18850	0.90	+0.1
4,071,127	-				+0.4
4,071,127	-				-1.7
4,071,168	+				-2.5
4,071,223	+				+0.7
4,071,223	+				+0.5
4,071,224	-				-1.5
4,071,224	-				+0.5
4,071,259	+				+1.0
4,071,259	+				-0.7
4,071,259	+				-0.0
4,071,259	+				-0.1
4,071,260	-				-1.1
4,071,260	-				-0.1
4,071,260	-				+0.4
4,071,325	+				-1.1
4,071,325	+				+0.9
4,071,325	+				+0.1
4,071,326	-				+2.4
4,071,326	-				+0.3
4,071,326	-				+0.9
4,071,326	-				+0.1
4,071,326	-				+0.2
4,071,326	-				+0.0
4,071,502	+		DZA65_RS18855	0.27	+0.7
4,071,502	+		DZA65_RS18855	0.27	+0.3
4,071,503	-		DZA65_RS18855	0.27	-2.6
4,071,503	-		DZA65_RS18855	0.27	+1.6
4,071,571	+		DZA65_RS18855	0.33	-0.4
4,071,571	+		DZA65_RS18855	0.33	-1.6
4,071,571	+		DZA65_RS18855	0.33	+0.9
4,071,571	+		DZA65_RS18855	0.33	+1.1
4,071,571	+		DZA65_RS18855	0.33	+0.9
4,071,572	-		DZA65_RS18855	0.33	+1.1
4,071,572	-		DZA65_RS18855	0.33	+0.6
4,071,572	-		DZA65_RS18855	0.33	-1.9
4,071,751	+		DZA65_RS18855	0.50	-0.1
4,071,751	+		DZA65_RS18855	0.50	-0.3
4,071,752	-		DZA65_RS18855	0.50	-1.2
4,071,752	-		DZA65_RS18855	0.50	-1.1
4,071,752	-		DZA65_RS18855	0.50	-0.3
4,071,827	+		DZA65_RS18855	0.57	+0.1
4,071,827	+		DZA65_RS18855	0.57	+0.3
4,071,838	+		DZA65_RS18855	0.58	+1.2
4,071,838	+		DZA65_RS18855	0.58	+1.0
4,071,838	+		DZA65_RS18855	0.58	-1.7
4,071,839	-		DZA65_RS18855	0.59	+0.3
4,071,839	-		DZA65_RS18855	0.59	-1.3
4,071,874	+		DZA65_RS18855	0.62	-0.4
4,071,874	+		DZA65_RS18855	0.62	+0.1
4,071,874	+		DZA65_RS18855	0.62	+1.1
4,071,874	+		DZA65_RS18855	0.62	-0.9
4,071,874	+		DZA65_RS18855	0.62	+0.1
4,071,874	+		DZA65_RS18855	0.62	-2.1
4,071,874	+		DZA65_RS18855	0.62	-0.4
4,071,874	+		DZA65_RS18855	0.62	-1.7
4,071,874	+		DZA65_RS18855	0.62	+0.4
4,071,874	+		DZA65_RS18855	0.62	+0.1
4,071,874	+		DZA65_RS18855	0.62	+0.7
4,071,874	+		DZA65_RS18855	0.62	-2.3
4,071,874	+		DZA65_RS18855	0.62	-0.7
4,071,874	+		DZA65_RS18855	0.62	-1.1
4,071,875	-		DZA65_RS18855	0.62	+2.0
4,071,875	-		DZA65_RS18855	0.62	-0.7
4,071,875	-		DZA65_RS18855	0.62	-1.1
4,071,875	-		DZA65_RS18855	0.62	-0.6
4,071,875	-		DZA65_RS18855	0.62	+1.4
4,071,875	-		DZA65_RS18855	0.62	+1.0
4,071,875	-		DZA65_RS18855	0.62	+2.0
4,071,875	-		DZA65_RS18855	0.62	-2.1
4,071,875	-		DZA65_RS18855	0.62	+1.7
4,071,875	-		DZA65_RS18855	0.62	+1.1
4,071,875	-		DZA65_RS18855	0.62	-1.9
4,071,875	-		DZA65_RS18855	0.62	-0.1