Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS18085

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,888,964	+				-2.4
3,888,964	+				+0.1
3,888,964	+				+1.5
3,888,965	-				-0.2
3,888,965	-				-2.4
3,888,987	-				+1.2
3,889,091	+				+1.6
3,889,091	+				-0.1
3,889,092	-				-0.0
3,889,092	-				-1.1
3,889,105	+				+0.0
3,889,105	+				-1.0
3,889,106	-				-1.1
3,889,110	+				-0.2
3,889,110	+				+0.6
3,889,110	+				+1.1
3,889,110	+				-0.6
3,889,111	-				+0.2
3,889,111	-				-0.8
3,889,111	-				-0.2
3,889,111	-				+0.2
3,889,111	-				-0.6
3,889,111	-				+1.5
3,889,111	-				+0.0
3,889,111	-				-0.7
3,889,118	-				+0.0
3,889,118	-				-0.8
3,889,118	-				+0.1
3,889,136	-				+0.4
3,889,150	+				+0.3
3,889,150	+				-0.4
3,889,150	+				+0.8
3,889,151	-				-1.2
3,889,199	+				+0.5
3,889,200	-				-0.5
3,889,200	-				+0.9
3,889,325	-		DZA65_RS18080	0.15	-0.4
3,889,348	+		DZA65_RS18080	0.18	-0.4
3,889,378	+		DZA65_RS18080	0.22	-2.0
3,889,379	-		DZA65_RS18080	0.22	+0.1
3,889,559	-		DZA65_RS18080	0.47	+0.2
3,889,559	-		DZA65_RS18080	0.47	-1.2
3,889,690	+		DZA65_RS18080	0.65	-0.4
3,889,690	+		DZA65_RS18080	0.65	-1.2
3,889,690	+		DZA65_RS18080	0.65	-0.0
3,889,709	-		DZA65_RS18080	0.67	-1.1
3,889,943	+				-1.2
3,889,944	-				-2.0
3,890,001	-				+0.8
3,890,136	-		DZA65_RS18085	0.10	-1.1
3,890,262	-		DZA65_RS18085	0.17	+0.6
3,890,294	+		DZA65_RS18085	0.19	+0.3
3,890,294	+		DZA65_RS18085	0.19	-1.0
3,890,294	+		DZA65_RS18085	0.19	-0.0
3,890,294	+		DZA65_RS18085	0.19	-2.2
3,890,294	+		DZA65_RS18085	0.19	-0.6
3,890,295	-		DZA65_RS18085	0.19	+0.4
3,890,295	-		DZA65_RS18085	0.19	-0.1
3,890,370	+		DZA65_RS18085	0.24	-1.0
3,890,501	+		DZA65_RS18085	0.31	-1.8
3,890,502	-		DZA65_RS18085	0.31	-0.9
3,890,502	-		DZA65_RS18085	0.31	-1.3
3,890,502	-		DZA65_RS18085	0.31	-0.1
3,890,615	+		DZA65_RS18085	0.38	+0.8
3,890,615	+		DZA65_RS18085	0.38	-2.4
3,890,615	+		DZA65_RS18085	0.38	+1.8
3,890,615	+		DZA65_RS18085	0.38	-1.4
3,890,615	+		DZA65_RS18085	0.38	-1.6
3,890,616	-		DZA65_RS18085	0.38	+0.6
3,890,616	-		DZA65_RS18085	0.38	-0.3
3,890,616	-		DZA65_RS18085	0.38	-1.8
3,890,616	-		DZA65_RS18085	0.38	-2.4
3,890,752	+		DZA65_RS18085	0.46	-0.5
3,890,752	+		DZA65_RS18085	0.46	-0.8
3,890,752	+		DZA65_RS18085	0.46	+1.3
3,890,752	+				-0.2
3,890,752	+		DZA65_RS18085	0.46	-0.3
3,890,753	-		DZA65_RS18085	0.46	+1.2
3,890,753	-		DZA65_RS18085	0.46	+0.4
3,890,753	-		DZA65_RS18085	0.46	+0.4
3,890,753	-		DZA65_RS18085	0.46	+0.1
3,890,753	-		DZA65_RS18085	0.46	-2.0
3,890,849	+		DZA65_RS18085	0.52	+0.5
3,890,849	+		DZA65_RS18085	0.52	-1.0
3,890,850	-		DZA65_RS18085	0.52	-2.4
3,890,850	-		DZA65_RS18085	0.52	+0.5
3,890,850	-		DZA65_RS18085	0.52	+1.2
3,890,851	+		DZA65_RS18085	0.52	-1.0
3,890,852	-		DZA65_RS18085	0.52	-0.5
3,890,852	-		DZA65_RS18085	0.52	-2.9
3,890,878	+		DZA65_RS18085	0.53	+2.7
3,890,879	-		DZA65_RS18085	0.53	+0.5
3,890,879	-		DZA65_RS18085	0.53	+0.1
3,890,903	+		DZA65_RS18085	0.55	+0.8
3,890,904	-		DZA65_RS18085	0.55	-0.1
3,890,925	+		DZA65_RS18085	0.56	-3.6
3,890,925	+		DZA65_RS18085	0.56	-0.2
3,890,925	+		DZA65_RS18085	0.56	-2.4
3,890,925	+		DZA65_RS18085	0.56	-2.9
3,890,925	+		DZA65_RS18085	0.56	-2.0
3,890,925	+		DZA65_RS18085	0.56	-0.2
3,890,925	+		DZA65_RS18085	0.56	-2.1
3,890,925	+		DZA65_RS18085	0.56	+1.2
3,890,926	-		DZA65_RS18085	0.56	-2.1
3,890,926	-		DZA65_RS18085	0.56	-2.9
3,890,926	-		DZA65_RS18085	0.56	-0.0
3,890,926	-		DZA65_RS18085	0.56	-0.2
3,890,926	-		DZA65_RS18085	0.56	-1.2
3,890,930	+		DZA65_RS18085	0.56	-0.1
3,890,937	+		DZA65_RS18085	0.57	+1.0
3,890,937	+		DZA65_RS18085	0.57	-0.2
3,891,046	+		DZA65_RS18085	0.63	-1.4
3,891,046	+		DZA65_RS18085	0.63	+1.1
3,891,046	+		DZA65_RS18085	0.63	-1.6
3,891,047	-		DZA65_RS18085	0.63	-0.8
3,891,166	+		DZA65_RS18085	0.70	-0.8
3,891,167	-		DZA65_RS18085	0.70	-1.8
3,891,206	+		DZA65_RS18085	0.72	-1.9
3,891,206	+		DZA65_RS18085	0.72	-0.8
3,891,206	+		DZA65_RS18085	0.72	-0.8
3,891,206	+		DZA65_RS18085	0.72	-1.2
3,891,207	-		DZA65_RS18085	0.73	-0.7
3,891,207	-		DZA65_RS18085	0.73	-0.2
3,891,352	+		DZA65_RS18085	0.81	-0.2
3,891,353	-		DZA65_RS18085	0.81	+0.1
3,891,353	-		DZA65_RS18085	0.81	-1.2
3,891,505	+		DZA65_RS18085	0.90	-0.6
3,891,505	+		DZA65_RS18085	0.90	+1.0
3,891,505	+		DZA65_RS18085	0.90	-1.0
3,891,505	+		DZA65_RS18085	0.90	-1.8
3,891,505	+		DZA65_RS18085	0.90	-1.6
3,891,505	+		DZA65_RS18085	0.90	-0.6
3,891,505	+		DZA65_RS18085	0.90	-0.5
3,891,505	+		DZA65_RS18085	0.90	-0.9
3,891,505	+		DZA65_RS18085	0.90	-2.6
3,891,506	-				-0.2
3,891,506	-				+1.7
3,891,506	-				+0.4
3,891,506	-				-2.7
3,891,506	-				-0.2
3,891,506	-				-1.2
3,891,506	-				-0.2
3,891,506	-				-2.0
3,891,506	-				-2.2
3,891,506	-				-1.8
3,891,506	-				-1.9
3,891,506	-				+1.1
3,891,506	-				+1.8
3,891,582	-				-0.7
3,891,582	-				-1.6
3,891,582	-				-2.3
3,891,582	-				+0.4
3,891,598	+				-2.0
3,891,599	-				-0.7
3,891,599	-				+1.8
3,891,664	+				-0.6
3,891,664	+				-1.8
3,891,678	+				-1.6
3,891,678	+				-0.5
3,891,681	+				+0.8
3,891,681	+				+0.4
3,891,681	+				-1.6
3,891,681	+				-0.1
3,891,681	+				-1.7
3,891,681	+				+0.0
3,891,681	+				-2.0
3,891,681	+				-1.6
3,891,681	+				-2.4
3,891,681	+				-0.8
3,891,681	+				+1.0
3,891,682	-				-1.6
3,891,682	-				-1.6
3,891,682	-				-0.7
3,891,682	-				+0.4
3,891,682	-				-0.4
3,891,682	-				+0.5
3,891,682	-				-1.8
3,891,682	-				-0.6
3,891,791	+				-1.7
3,891,791	+				-0.5
3,891,792	-				-0.1
3,891,792	-				-0.2
3,891,792	-				-1.8
3,891,792	-				-0.7
3,891,828	+				+0.8
3,891,828	+				-0.7
3,891,828	+				+0.2
3,891,828	+				-0.2
3,891,828	+				+2.3
3,891,829	-				-1.2
3,891,829	-				+1.8
3,891,829	-				+1.8
3,891,829	-				+0.2
3,891,829	-				+1.4
3,891,829	-				-1.4
3,891,829	-				+1.8
3,891,829	-				-1.7
3,891,829	-				-0.3
3,891,829	-				-0.8
3,891,829	-				-0.8
3,891,829	-				-1.2
3,891,829	-				-1.8
3,891,829	-				-0.9
3,891,832	+				-0.8
3,891,832	+				-1.0
3,891,833	-				-1.9
3,891,833	-				+0.6
3,891,833	-				-1.6
3,891,893	+		DZA65_RS18090	0.12	+0.0
3,891,893	+		DZA65_RS18090	0.12	-3.0
3,891,893	+		DZA65_RS18090	0.12	+0.8
3,891,893	+		DZA65_RS18090	0.12	+0.8
3,891,893	+		DZA65_RS18090	0.12	-0.1
3,891,893	+		DZA65_RS18090	0.12	-0.8
3,891,894	-		DZA65_RS18090	0.12	+0.7
3,891,894	-		DZA65_RS18090	0.12	-0.7
3,891,894	-		DZA65_RS18090	0.12	-1.2
3,891,894	-		DZA65_RS18090	0.12	-1.8
3,891,894	-		DZA65_RS18090	0.12	-1.6
3,891,897	+		DZA65_RS18090	0.12	-0.8
3,891,897	+		DZA65_RS18090	0.12	-0.5
3,891,898	-		DZA65_RS18090	0.12	-1.6
3,891,898	-		DZA65_RS18090	0.12	-1.6
3,891,898	-		DZA65_RS18090	0.12	-0.2
3,891,898	-		DZA65_RS18090	0.12	-0.6
3,891,958	+		DZA65_RS18090	0.15	+0.1
3,891,959	-		DZA65_RS18090	0.15	+1.3
3,891,963	+		DZA65_RS18090	0.16	-1.9
3,891,963	+		DZA65_RS18090	0.16	-2.0
3,891,964	-		DZA65_RS18090	0.16	-2.5
3,891,964	-		DZA65_RS18090	0.16	+2.0
3,891,964	-		DZA65_RS18090	0.16	-0.2
3,892,066	+		DZA65_RS18090	0.21	+1.1
3,892,066	+		DZA65_RS18090	0.21	-0.1
3,892,242	+		DZA65_RS18090	0.31	-0.8
3,892,242	+		DZA65_RS18090	0.31	-1.0
3,892,243	-		DZA65_RS18090	0.31	-1.1
3,892,243	-		DZA65_RS18090	0.31	-1.8
3,892,274	+		DZA65_RS18090	0.33	+1.1
3,892,274	+		DZA65_RS18090	0.33	-3.0
3,892,274	+		DZA65_RS18090	0.33	-0.6
3,892,274	+		DZA65_RS18090	0.33	-0.1
3,892,275	-		DZA65_RS18090	0.33	+1.0
3,892,275	-		DZA65_RS18090	0.33	-1.0
3,892,275	-		DZA65_RS18090	0.33	-0.6
3,892,275	-		DZA65_RS18090	0.33	-0.2
3,892,275	-		DZA65_RS18090	0.33	+0.2
3,892,314	+		DZA65_RS18090	0.35	-2.4
3,892,315	-		DZA65_RS18090	0.35	-1.7
3,892,315	-		DZA65_RS18090	0.35	-0.1
3,892,315	-		DZA65_RS18090	0.35	-0.3
3,892,315	-		DZA65_RS18090	0.35	+0.0
3,892,390	+		DZA65_RS18090	0.39	-3.7
3,892,416	+		DZA65_RS18090	0.41	+0.8
3,892,417	-		DZA65_RS18090	0.41	-0.9
3,892,424	+		DZA65_RS18090	0.41	-1.3
3,892,425	-		DZA65_RS18090	0.41	+3.6
3,892,482	+		DZA65_RS18090	0.44	-1.6
3,892,638	+		DZA65_RS18090	0.53	+1.5
3,892,639	-		DZA65_RS18090	0.53	+0.8
3,892,639	-		DZA65_RS18090	0.53	+0.5
3,892,668	+		DZA65_RS18090	0.54	-0.3
3,892,669	-		DZA65_RS18090	0.54	-0.0