Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17585

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,789,655	+		DZA65_RS17575	0.86	+2.0
3,789,656	-		DZA65_RS17575	0.86	+0.2
3,789,656	-		DZA65_RS17575	0.86	-1.8
3,789,656	-		DZA65_RS17575	0.86	-0.1
3,789,689	-		DZA65_RS17575	0.89	-0.5
3,789,689	-		DZA65_RS17575	0.89	-0.8
3,789,689	-		DZA65_RS17575	0.89	+0.0
3,789,722	+				+0.2
3,789,722	+				+1.7
3,789,722	+				+0.3
3,789,722	+				+0.7
3,789,722	+				+2.2
3,789,723	-				+0.6
3,789,723	-				-1.5
3,789,723	-				+0.0
3,789,723	-				-2.1
3,789,723	-				+1.0
3,789,755	+				-0.5
3,789,755	+				+0.1
3,789,755	+				-0.8
3,789,755	+				+1.1
3,789,756	-				-0.4
3,789,756	-				-1.6
3,789,756	-				-3.1
3,789,765	+				-1.6
3,789,765	+				+0.1
3,789,765	+				-0.6
3,789,766	-				+0.7
3,789,766	-				-0.3
3,789,766	-				-1.6
3,789,782	+				+0.4
3,789,783	-				+2.1
3,789,783	-				-0.8
3,789,793	+				-0.4
3,789,793	+				-1.1
3,789,794	-				-0.3
3,789,861	-				-0.4
3,789,861	-				+0.4
3,789,905	+		DZA65_RS17580	0.15	+0.0
3,789,906	-		DZA65_RS17580	0.15	-0.3
3,789,906	-		DZA65_RS17580	0.15	+2.0
3,789,924	+		DZA65_RS17580	0.17	+1.5
3,789,924	+		DZA65_RS17580	0.17	+1.6
3,789,924	+		DZA65_RS17580	0.17	+0.2
3,789,925	-		DZA65_RS17580	0.17	+0.0
3,789,925	-		DZA65_RS17580	0.17	-0.4
3,789,925	-		DZA65_RS17580	0.17	-2.1
3,789,926	+		DZA65_RS17580	0.17	+1.7
3,789,926	+		DZA65_RS17580	0.17	+1.6
3,789,927	-		DZA65_RS17580	0.17	-1.4
3,789,927	-		DZA65_RS17580	0.17	+0.2
3,789,927	-		DZA65_RS17580	0.17	+1.0
3,790,013	+		DZA65_RS17580	0.28	-2.3
3,790,014	-		DZA65_RS17580	0.28	+0.0
3,790,014	-		DZA65_RS17580	0.28	-0.8
3,790,014	-		DZA65_RS17580	0.28	+0.3
3,790,020	+		DZA65_RS17580	0.29	-0.3
3,790,021	-		DZA65_RS17580	0.29	-0.8
3,790,028	-		DZA65_RS17580	0.30	+0.0
3,790,028	-		DZA65_RS17580	0.30	+0.2
3,790,034	+		DZA65_RS17580	0.30	+3.1
3,790,035	-		DZA65_RS17580	0.30	-0.8
3,790,035	-		DZA65_RS17580	0.30	-0.8
3,790,035	-		DZA65_RS17580	0.30	-0.3
3,790,035	-		DZA65_RS17580	0.30	-0.8
3,790,083	+		DZA65_RS17580	0.36	+0.7
3,790,083	+		DZA65_RS17580	0.36	-2.2
3,790,121	+		DZA65_RS17580	0.41	-0.1
3,790,122	-		DZA65_RS17580	0.41	-1.1
3,790,122	-		DZA65_RS17580	0.41	+0.3
3,790,122	-		DZA65_RS17580	0.41	-1.8
3,790,133	+		DZA65_RS17580	0.42	+1.0
3,790,133	+				+0.3
3,790,133	+		DZA65_RS17580	0.42	-0.1
3,790,133	+		DZA65_RS17580	0.42	+1.3
3,790,134	-		DZA65_RS17580	0.42	-1.1
3,790,134	-		DZA65_RS17580	0.42	-0.6
3,790,180	+		DZA65_RS17580	0.48	+0.9
3,790,190	+		DZA65_RS17580	0.49	+0.4
3,790,191	-		DZA65_RS17580	0.49	-1.8
3,790,241	-		DZA65_RS17580	0.55	+0.3
3,790,253	+		DZA65_RS17580	0.57	+1.2
3,790,284	+		DZA65_RS17580	0.61	+0.1
3,790,284	+		DZA65_RS17580	0.61	+0.9
3,790,284	+		DZA65_RS17580	0.61	+1.0
3,790,284	+		DZA65_RS17580	0.61	+0.7
3,790,284	+		DZA65_RS17580	0.61	+0.4
3,790,284	+		DZA65_RS17580	0.61	+0.3
3,790,284	+		DZA65_RS17580	0.61	+1.5
3,790,284	+		DZA65_RS17580	0.61	+0.4
3,790,284	+		DZA65_RS17580	0.61	+0.2
3,790,285	-		DZA65_RS17580	0.61	+2.6
3,790,285	-		DZA65_RS17580	0.61	+1.3
3,790,285	-		DZA65_RS17580	0.61	-0.8
3,790,285	-		DZA65_RS17580	0.61	+1.4
3,790,323	+		DZA65_RS17580	0.65	+0.4
3,790,323	+		DZA65_RS17580	0.65	+1.7
3,790,323	+		DZA65_RS17580	0.65	-0.5
3,790,323	+		DZA65_RS17580	0.65	+0.3
3,790,323	+		DZA65_RS17580	0.65	-0.1
3,790,323	+		DZA65_RS17580	0.65	+0.3
3,790,323	+		DZA65_RS17580	0.65	-0.1
3,790,323	+		DZA65_RS17580	0.65	-0.6
3,790,323	+		DZA65_RS17580	0.65	+0.1
3,790,324	-		DZA65_RS17580	0.65	+1.9
3,790,324	-		DZA65_RS17580	0.65	-2.3
3,790,324	-		DZA65_RS17580	0.65	-1.8
3,790,325	+		DZA65_RS17580	0.65	+1.2
3,790,325	+		DZA65_RS17580	0.65	-0.4
3,790,325	+		DZA65_RS17580	0.65	+1.6
3,790,326	-		DZA65_RS17580	0.66	+0.2
3,790,326	-		DZA65_RS17580	0.66	-2.6
3,790,326	-		DZA65_RS17580	0.66	-1.8
3,790,349	+		DZA65_RS17580	0.68	-0.2
3,790,382	+		DZA65_RS17580	0.72	+1.6
3,790,403	+		DZA65_RS17580	0.75	-0.7
3,790,403	+		DZA65_RS17580	0.75	-1.6
3,790,403	+		DZA65_RS17580	0.75	+0.4
3,790,403	+		DZA65_RS17580	0.75	+0.7
3,790,403	+		DZA65_RS17580	0.75	-1.0
3,790,404	-		DZA65_RS17580	0.75	+2.2
3,790,404	-		DZA65_RS17580	0.75	-0.7
3,790,404	-		DZA65_RS17580	0.75	+0.7
3,790,491	+		DZA65_RS17580	0.86	-2.1
3,790,491	+		DZA65_RS17580	0.86	+0.3
3,790,492	-		DZA65_RS17580	0.86	+0.2
3,790,492	-		DZA65_RS17580	0.86	+2.1
3,790,500	-		DZA65_RS17580	0.87	+1.0
3,790,500	-		DZA65_RS17580	0.87	+1.2
3,790,580	-				-0.7
3,790,670	+				+0.6
3,790,670	+				-0.8
3,790,671	-				-1.1
3,790,683	-				-0.8
3,790,683	-				+0.9
3,790,713	+				-3.0
3,790,726	+				-0.3
3,790,726	+				+0.5
3,790,727	-				+1.3
3,790,732	-				-0.5
3,790,732	-				-0.9
3,790,732	-				-0.3
3,790,840	+		DZA65_RS17585	0.14	-0.8
3,790,867	-		DZA65_RS17585	0.15	-0.2
3,790,867	-		DZA65_RS17585	0.15	+0.7
3,791,036	+		DZA65_RS17585	0.25	+1.0
3,791,208	+		DZA65_RS17585	0.36	+1.3
3,791,209	-		DZA65_RS17585	0.36	+0.3
3,791,209	-		DZA65_RS17585	0.36	+1.4
3,791,224	-		DZA65_RS17585	0.37	-1.4
3,791,224	-		DZA65_RS17585	0.37	+0.3
3,791,224	-		DZA65_RS17585	0.37	-0.5
3,791,273	+		DZA65_RS17585	0.40	+0.1
3,791,273	+		DZA65_RS17585	0.40	-1.3
3,791,273	+		DZA65_RS17585	0.40	-0.4
3,791,273	+		DZA65_RS17585	0.40	+2.7
3,791,273	+		DZA65_RS17585	0.40	+0.2
3,791,273	+		DZA65_RS17585	0.40	-0.8
3,791,273	+		DZA65_RS17585	0.40	-1.0
3,791,273	+		DZA65_RS17585	0.40	+0.7
3,791,273	+		DZA65_RS17585	0.40	+1.2
3,791,273	+		DZA65_RS17585	0.40	-1.6
3,791,273	+		DZA65_RS17585	0.40	-0.8
3,791,273	+		DZA65_RS17585	0.40	-0.3
3,791,273	+		DZA65_RS17585	0.40	-0.5
3,791,273	+		DZA65_RS17585	0.40	+1.3
3,791,273	+		DZA65_RS17585	0.40	+0.2
3,791,273	+		DZA65_RS17585	0.40	-1.8
3,791,273	+		DZA65_RS17585	0.40	+0.1
3,791,273	+		DZA65_RS17585	0.40	-0.8
3,791,273	+		DZA65_RS17585	0.40	+0.2
3,791,273	+		DZA65_RS17585	0.40	-1.0
3,791,274	-		DZA65_RS17585	0.40	-1.3
3,791,274	-		DZA65_RS17585	0.40	+0.9
3,791,274	-		DZA65_RS17585	0.40	+1.0
3,791,274	-		DZA65_RS17585	0.40	+0.4
3,791,274	-		DZA65_RS17585	0.40	-0.3
3,791,274	-		DZA65_RS17585	0.40	-1.4
3,791,274	-		DZA65_RS17585	0.40	+0.7
3,791,274	-		DZA65_RS17585	0.40	+1.0
3,791,274	-		DZA65_RS17585	0.40	+0.1
3,791,274	-		DZA65_RS17585	0.40	-1.4
3,791,274	-				+0.2
3,791,274	-		DZA65_RS17585	0.40	+0.4
3,791,274	-		DZA65_RS17585	0.40	-1.0
3,791,274	-		DZA65_RS17585	0.40	+0.3
3,791,274	-		DZA65_RS17585	0.40	+0.2
3,791,274	-		DZA65_RS17585	0.40	-1.1
3,791,274	-		DZA65_RS17585	0.40	+1.6
3,791,274	-				+0.2
3,791,274	-		DZA65_RS17585	0.40	+0.4
3,791,274	-		DZA65_RS17585	0.40	+1.6
3,791,274	-		DZA65_RS17585	0.40	+0.5
3,791,274	-		DZA65_RS17585	0.40	+0.1
3,791,275	+		DZA65_RS17585	0.40	-1.3
3,791,275	+		DZA65_RS17585	0.40	-1.3
3,791,275	+		DZA65_RS17585	0.40	-3.2
3,791,275	+		DZA65_RS17585	0.40	-0.8
3,791,275	+		DZA65_RS17585	0.40	+0.5
3,791,275	+		DZA65_RS17585	0.40	+1.1
3,791,275	+		DZA65_RS17585	0.40	+0.2
3,791,275	+		DZA65_RS17585	0.40	-0.3
3,791,275	+		DZA65_RS17585	0.40	+0.1
3,791,276	-		DZA65_RS17585	0.40	+0.3
3,791,276	-		DZA65_RS17585	0.40	+1.2
3,791,276	-		DZA65_RS17585	0.40	+1.8
3,791,377	+		DZA65_RS17585	0.46	-1.3
3,791,393	+		DZA65_RS17585	0.47	+3.0
3,791,393	+		DZA65_RS17585	0.47	+0.6
3,791,393	+		DZA65_RS17585	0.47	+2.2
3,791,393	+		DZA65_RS17585	0.47	-1.7
3,791,472	+		DZA65_RS17585	0.51	+0.7
3,791,501	+		DZA65_RS17585	0.53	+1.7
3,791,696	+		DZA65_RS17585	0.65	+0.7
3,791,697	-		DZA65_RS17585	0.65	+1.8
3,791,733	-		DZA65_RS17585	0.67	-0.8
3,791,779	+				+2.7
3,791,780	-		DZA65_RS17585	0.70	+1.2
3,791,828	+		DZA65_RS17585	0.73	+0.7
3,791,828	+		DZA65_RS17585	0.73	+0.2
3,791,828	+		DZA65_RS17585	0.73	+0.9
3,791,829	-		DZA65_RS17585	0.73	-1.3
3,791,886	+		DZA65_RS17585	0.76	+0.7
3,791,886	+		DZA65_RS17585	0.76	-1.3
3,791,886	+		DZA65_RS17585	0.76	-1.1
3,791,886	+		DZA65_RS17585	0.76	+0.5
3,791,886	+		DZA65_RS17585	0.76	+0.9
3,791,886	+		DZA65_RS17585	0.76	+0.1
3,791,886	+		DZA65_RS17585	0.76	-0.6
3,791,887	-		DZA65_RS17585	0.76	+0.1
3,791,887	-		DZA65_RS17585	0.76	-1.1
3,791,887	-		DZA65_RS17585	0.76	-2.3
3,791,887	-		DZA65_RS17585	0.76	+1.0
3,791,887	-		DZA65_RS17585	0.76	-0.8
3,791,887	-		DZA65_RS17585	0.76	+0.5
3,791,887	-		DZA65_RS17585	0.76	+0.5
3,791,887	-				+0.7
3,792,045	+		DZA65_RS17585	0.86	-0.8
3,792,045	+		DZA65_RS17585	0.86	-0.1
3,792,045	+		DZA65_RS17585	0.86	+1.1
3,792,046	-		DZA65_RS17585	0.86	+1.5
3,792,046	-		DZA65_RS17585	0.86	-1.9
3,792,046	-		DZA65_RS17585	0.86	-1.0
3,792,086	+		DZA65_RS17585	0.88	+0.7
3,792,087	-		DZA65_RS17585	0.88	-1.3
3,792,098	-		DZA65_RS17585	0.89	-1.8
3,792,098	-		DZA65_RS17585	0.89	-1.6
3,792,109	+		DZA65_RS17585	0.89	-0.6
3,792,127	-				-0.3
3,792,149	+				+0.7
3,792,149	+				-1.3
3,792,149	+				+0.3
3,792,149	+				+3.1
3,792,149	+				+0.2
3,792,149	+				-0.8
3,792,149	+				+0.4
3,792,149	+				-1.1
3,792,150	-				+2.0
3,792,150	-				-1.0
3,792,150	-				-0.7
3,792,212	+				+0.7
3,792,212	+				+0.6
3,792,212	+				-2.9
3,792,212	+				-1.8
3,792,212	+				-0.2
3,792,213	-				+0.5
3,792,213	-				-0.1
3,792,213	-				+1.2
3,792,213	-				-0.8
3,792,213	-				-0.1
3,792,255	+				+1.6
3,792,256	-				-2.6
3,792,256	-				-0.4
3,792,256	-				-0.3
3,792,256	-				+0.6
3,792,275	+				-0.3
3,792,275	+				-0.3
3,792,275	+				+0.3
3,792,275	+				-0.3
3,792,276	-				+0.7
3,792,310	+				-0.7
3,792,310	+				-1.3
3,792,310	+				-1.8
3,792,310	+				+0.7
3,792,310	+				-0.3
3,792,310	+				+0.7
3,792,310	+				+1.1
3,792,311	-				-0.1
3,792,311	-				-3.2
3,792,311	-				+0.4
3,792,311	-				+0.1
3,792,311	-				-1.1
3,792,313	+				-0.1
3,792,313	+				+0.2
3,792,313	+				-2.1
3,792,313	+				-0.5
3,792,313	+				-0.8
3,792,313	+				-0.4
3,792,313	+				+0.6
3,792,313	+				-0.4
3,792,313	+				+1.2
3,792,313	+				-1.1
3,792,314	-				-1.1
3,792,314	-				-0.8
3,792,314	-				-1.8
3,792,314	-				+0.7
3,792,314	-				-0.3
3,792,314	-				+1.0
3,792,314	-				+2.7
3,792,314	-				-0.1
3,792,320	+				+0.3
3,792,375	+				-1.3
3,792,375	+				-2.4
3,792,375	+				+0.5
3,792,376	-				+0.9
3,792,376	-				+2.2
3,792,376	-				+0.3
3,792,612	+		DZA65_RS17590	0.26	-2.5
3,792,612	+		DZA65_RS17590	0.26	+0.2
3,792,612	+		DZA65_RS17590	0.26	+2.7
3,792,612	+		DZA65_RS17590	0.26	-0.6
3,792,612	+		DZA65_RS17590	0.26	-2.5
3,792,612	+		DZA65_RS17590	0.26	-2.1
3,792,612	+		DZA65_RS17590	0.26	-2.3
3,792,612	+		DZA65_RS17590	0.26	-0.8
3,792,612	+		DZA65_RS17590	0.26	-1.6
3,792,613	-		DZA65_RS17590	0.26	+0.2
3,792,613	-				+2.3
3,792,613	-		DZA65_RS17590	0.26	-0.4
3,792,613	-		DZA65_RS17590	0.26	-0.3
3,792,613	-		DZA65_RS17590	0.26	-0.6
3,792,613	-		DZA65_RS17590	0.26	-0.0
3,792,613	-		DZA65_RS17590	0.26	-0.1
3,792,613	-		DZA65_RS17590	0.26	+0.4
3,792,720	+		DZA65_RS17590	0.35	+1.3
3,792,720	+		DZA65_RS17590	0.35	+1.1
3,792,720	+		DZA65_RS17590	0.35	-0.4
3,792,721	-		DZA65_RS17590	0.35	-1.3
3,792,736	+		DZA65_RS17590	0.36	-1.3
3,792,736	+		DZA65_RS17590	0.36	+2.0
3,792,737	-		DZA65_RS17590	0.36	-0.1
3,792,737	-		DZA65_RS17590	0.36	+0.9
3,792,789	+		DZA65_RS17590	0.40	-1.6
3,792,789	+		DZA65_RS17590	0.40	-1.8
3,792,790	-		DZA65_RS17590	0.40	-0.9
3,792,875	+		DZA65_RS17590	0.47	-0.4
3,792,907	+		DZA65_RS17590	0.50	+0.7
3,792,907	+		DZA65_RS17590	0.50	-1.0
3,792,908	-		DZA65_RS17590	0.50	-0.6
3,792,908	-		DZA65_RS17590	0.50	-0.4
3,792,908	-		DZA65_RS17590	0.50	-1.3
3,792,908	-		DZA65_RS17590	0.50	+0.3
3,793,018	+		DZA65_RS17590	0.59	+0.5
3,793,018	+		DZA65_RS17590	0.59	+0.2
3,793,018	+		DZA65_RS17590	0.59	+0.3
3,793,019	-		DZA65_RS17590	0.59	+0.5
3,793,019	-		DZA65_RS17590	0.59	-1.3
3,793,217	+		DZA65_RS17590	0.75	+1.5
3,793,284	+		DZA65_RS17590	0.80	+0.2
3,793,284	+		DZA65_RS17590	0.80	+1.2