Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17240

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,718,957	-		DZA65_RS17235	0.57	-3.2
3,718,957	-		DZA65_RS17235	0.57	+1.4
3,718,976	+		DZA65_RS17235	0.58	+0.2
3,718,976	+		DZA65_RS17235	0.58	+0.6
3,718,976	+		DZA65_RS17235	0.58	-1.1
3,718,977	-		DZA65_RS17235	0.58	+1.5
3,718,985	+		DZA65_RS17235	0.58	+0.3
3,718,986	-		DZA65_RS17235	0.58	-0.2
3,719,003	+		DZA65_RS17235	0.59	+0.7
3,719,003	+		DZA65_RS17235	0.59	+0.5
3,719,004	-		DZA65_RS17235	0.59	-1.1
3,719,004	-		DZA65_RS17235	0.59	+0.3
3,719,056	+		DZA65_RS17235	0.61	+1.0
3,719,056	+		DZA65_RS17235	0.61	+1.4
3,719,109	-		DZA65_RS17235	0.64	+0.8
3,719,170	-		DZA65_RS17235	0.67	-0.2
3,719,170	-		DZA65_RS17235	0.67	-0.4
3,719,193	+		DZA65_RS17235	0.68	+1.3
3,719,194	-		DZA65_RS17235	0.68	-1.1
3,719,219	+		DZA65_RS17235	0.69	+0.1
3,719,220	-		DZA65_RS17235	0.69	-0.1
3,719,220	-		DZA65_RS17235	0.69	+0.7
3,719,229	+		DZA65_RS17235	0.69	-0.3
3,719,229	+		DZA65_RS17235	0.69	-1.3
3,719,229	+		DZA65_RS17235	0.69	-1.4
3,719,229	+		DZA65_RS17235	0.69	-2.4
3,719,230	-		DZA65_RS17235	0.69	-0.5
3,719,235	+		DZA65_RS17235	0.70	-2.4
3,719,236	-		DZA65_RS17235	0.70	-1.0
3,719,247	+		DZA65_RS17235	0.70	-1.1
3,719,247	+		DZA65_RS17235	0.70	+0.6
3,719,247	+		DZA65_RS17235	0.70	+0.0
3,719,248	-		DZA65_RS17235	0.70	+0.0
3,719,248	-		DZA65_RS17235	0.70	-0.1
3,719,248	-		DZA65_RS17235	0.70	+0.3
3,719,248	-		DZA65_RS17235	0.70	-0.6
3,719,248	-		DZA65_RS17235	0.70	+0.1
3,719,349	+		DZA65_RS17235	0.75	-0.1
3,719,349	+		DZA65_RS17235	0.75	+0.4
3,719,349	+		DZA65_RS17235	0.75	-2.2
3,719,349	+		DZA65_RS17235	0.75	-2.1
3,719,349	+		DZA65_RS17235	0.75	+1.9
3,719,349	+		DZA65_RS17235	0.75	+0.5
3,719,350	-		DZA65_RS17235	0.75	-0.4
3,719,475	+		DZA65_RS17235	0.81	-1.4
3,719,475	+		DZA65_RS17235	0.81	+0.3
3,719,476	-		DZA65_RS17235	0.81	-0.8
3,719,520	+		DZA65_RS17235	0.83	-2.6
3,719,520	+		DZA65_RS17235	0.83	+0.3
3,719,520	+		DZA65_RS17235	0.83	+0.7
3,719,520	+		DZA65_RS17235	0.83	+0.4
3,719,520	+		DZA65_RS17235	0.83	+0.4
3,719,520	+		DZA65_RS17235	0.83	-0.6
3,719,520	+		DZA65_RS17235	0.83	-1.4
3,719,521	-		DZA65_RS17235	0.83	-1.3
3,719,521	-		DZA65_RS17235	0.83	-0.1
3,719,521	-		DZA65_RS17235	0.83	-0.0
3,719,521	-		DZA65_RS17235	0.83	-0.0
3,719,521	-		DZA65_RS17235	0.83	-0.3
3,719,521	-		DZA65_RS17235	0.83	+0.6
3,719,521	-		DZA65_RS17235	0.83	-0.8
3,719,521	-		DZA65_RS17235	0.83	-2.0
3,719,521	-		DZA65_RS17235	0.83	-0.6
3,719,522	+		DZA65_RS17235	0.83	+0.5
3,719,522	+		DZA65_RS17235	0.83	-0.1
3,719,523	-		DZA65_RS17235	0.83	-1.3
3,719,601	+		DZA65_RS17235	0.87	+0.2
3,719,601	+		DZA65_RS17235	0.87	-1.0
3,719,601	+		DZA65_RS17235	0.87	-0.4
3,719,601	+		DZA65_RS17235	0.87	+1.2
3,719,601	+		DZA65_RS17235	0.87	+0.1
3,719,602	-		DZA65_RS17235	0.87	-0.3
3,719,604	+		DZA65_RS17235	0.87	-1.0
3,719,605	-		DZA65_RS17235	0.87	-1.3
3,719,616	+		DZA65_RS17235	0.87	-0.1
3,719,616	+		DZA65_RS17235	0.87	-0.3
3,719,616	+		DZA65_RS17235	0.87	-1.1
3,719,616	+		DZA65_RS17235	0.87	+0.3
3,719,617	-		DZA65_RS17235	0.87	+1.2
3,719,617	-		DZA65_RS17235	0.87	-0.4
3,719,617	-		DZA65_RS17235	0.87	-0.0
3,719,617	-		DZA65_RS17235	0.87	+0.7
3,719,644	-		DZA65_RS17235	0.89	-1.0
3,719,655	+		DZA65_RS17235	0.89	-0.8
3,719,656	-		DZA65_RS17235	0.89	+1.9
3,719,656	-		DZA65_RS17235	0.89	-1.1
3,719,656	-		DZA65_RS17235	0.89	+1.2
3,719,688	+				-0.3
3,719,688	+				+0.7
3,719,688	+				+0.7
3,719,689	-				-0.2
3,719,689	-				-0.7
3,719,689	-				+1.2
3,719,689	-				+1.3
3,719,689	-				+3.1
3,719,689	-				-0.3
3,719,689	-				+0.8
3,719,689	-				+1.6
3,719,689	-				-2.6
3,719,784	+				-2.2
3,719,784	+				-2.3
3,719,784	+				+2.5
3,719,784	+				-1.5
3,719,784	+				-0.7
3,719,784	+				-2.3
3,719,784	+				-0.8
3,719,784	+				+1.6
3,719,785	-				-0.7
3,719,785	-				-0.3
3,719,785	-				-1.7
3,719,785	-				-0.5
3,719,814	+				+1.2
3,719,814	+				-0.4
3,719,814	+				-0.0
3,719,814	+				-0.3
3,719,814	+				-1.5
3,719,814	+				-0.5
3,719,814	+				+0.3
3,719,814	+				-0.8
3,719,814	+				-0.9
3,719,814	+				-0.5
3,719,814	+				+0.2
3,719,815	-				-0.4
3,719,815	-				+1.4
3,719,815	-				+1.0
3,719,815	-				+0.4
3,719,815	-				-1.8
3,719,815	-				+0.2
3,719,817	+				-2.1
3,719,817	+				-1.3
3,719,817	+				+0.6
3,719,817	+				+2.3
3,719,817	+				-0.8
3,719,818	-				+1.3
3,719,818	-				+1.5
3,719,818	-				-0.3
3,719,818	-				+2.3
3,719,818	-				+0.6
3,719,818	-				+0.2
3,719,818	-				+1.2
3,719,818	-				+0.4
3,719,818	-				+0.1
3,719,883	+				-0.6
3,719,883	+				+1.3
3,719,883	+				-1.6
3,719,883	+				+0.4
3,719,884	-				+0.0
3,719,884	-				+1.0
3,719,886	+				-0.9
3,719,886	+				-1.6
3,719,886	+				-0.6
3,719,886	+				+0.3
3,719,886	+				+1.7
3,719,886	+				-2.1
3,719,886	+				-0.3
3,719,887	-				-0.8
3,719,887	-				+0.6
3,719,887	-				-0.3
3,719,887	-				+0.1
3,720,051	+		DZA65_RS17240	0.13	-0.8
3,720,051	+		DZA65_RS17240	0.13	+0.6
3,720,052	-		DZA65_RS17240	0.13	-0.5
3,720,109	-		DZA65_RS17240	0.19	-2.1
3,720,142	-		DZA65_RS17240	0.22	-0.5
3,720,208	-		DZA65_RS17240	0.29	-0.1
3,720,217	-		DZA65_RS17240	0.30	-0.8
3,720,241	+		DZA65_RS17240	0.33	+0.2
3,720,241	+		DZA65_RS17240	0.33	+1.2
3,720,241	+		DZA65_RS17240	0.33	+1.3
3,720,241	+		DZA65_RS17240	0.33	+1.7
3,720,242	-		DZA65_RS17240	0.33	-1.4
3,720,242	-		DZA65_RS17240	0.33	-0.5
3,720,242	-		DZA65_RS17240	0.33	+0.4
3,720,242	-				+3.1
3,720,242	-		DZA65_RS17240	0.33	+1.3
3,720,293	-		DZA65_RS17240	0.38	+0.7
3,720,293	-		DZA65_RS17240	0.38	+1.7
3,720,293	-		DZA65_RS17240	0.38	+0.7
3,720,294	+		DZA65_RS17240	0.38	-0.6
3,720,294	+		DZA65_RS17240	0.38	+1.4
3,720,294	+		DZA65_RS17240	0.38	+1.6
3,720,295	-		DZA65_RS17240	0.38	+0.1
3,720,295	-		DZA65_RS17240	0.38	-0.5
3,720,352	+		DZA65_RS17240	0.44	-0.7
3,720,416	-		DZA65_RS17240	0.51	-0.7
3,720,427	+		DZA65_RS17240	0.52	-0.1
3,720,428	-		DZA65_RS17240	0.52	+1.0
3,720,439	+		DZA65_RS17240	0.53	+0.1
3,720,440	-		DZA65_RS17240	0.53	-0.4
3,720,517	+		DZA65_RS17240	0.61	+0.9
3,720,517	+		DZA65_RS17240	0.61	-1.8
3,720,518	-		DZA65_RS17240	0.61	+2.9
3,720,520	+		DZA65_RS17240	0.62	-0.3
3,720,520	+		DZA65_RS17240	0.62	+1.0
3,720,520	+		DZA65_RS17240	0.62	+0.7
3,720,520	+		DZA65_RS17240	0.62	-0.6
3,720,520	+		DZA65_RS17240	0.62	+0.8
3,720,520	+		DZA65_RS17240	0.62	-0.8
3,720,520	+		DZA65_RS17240	0.62	-0.6
3,720,520	+		DZA65_RS17240	0.62	-0.4
3,720,521	-		DZA65_RS17240	0.62	+1.4
3,720,521	-		DZA65_RS17240	0.62	-0.4
3,720,521	-		DZA65_RS17240	0.62	-0.6
3,720,521	-		DZA65_RS17240	0.62	-0.2
3,720,521	-		DZA65_RS17240	0.62	+0.1
3,720,521	-		DZA65_RS17240	0.62	+0.2
3,720,521	-		DZA65_RS17240	0.62	+2.6
3,720,521	-		DZA65_RS17240	0.62	+1.5
3,720,535	+		DZA65_RS17240	0.63	+0.4
3,720,535	+		DZA65_RS17240	0.63	+1.4
3,720,535	+		DZA65_RS17240	0.63	-0.1
3,720,536	-		DZA65_RS17240	0.63	+0.2
3,720,536	-		DZA65_RS17240	0.63	-1.4
3,720,616	+		DZA65_RS17240	0.72	+0.3
3,720,617	-		DZA65_RS17240	0.72	-0.5
3,720,635	-		DZA65_RS17240	0.74	-0.4
3,720,649	+		DZA65_RS17240	0.75	-0.5
3,720,650	-		DZA65_RS17240	0.75	-0.4
3,720,650	-		DZA65_RS17240	0.75	-0.1
3,720,650	-		DZA65_RS17240	0.75	+1.5
3,720,650	-		DZA65_RS17240	0.75	+0.4
3,720,650	-		DZA65_RS17240	0.75	+1.1
3,720,677	+		DZA65_RS17240	0.78	+0.7
3,720,677	+		DZA65_RS17240	0.78	+0.2
3,720,678	-		DZA65_RS17240	0.78	+1.5
3,720,678	-		DZA65_RS17240	0.78	+1.7
3,720,678	-		DZA65_RS17240	0.78	+0.5
3,720,678	-		DZA65_RS17240	0.78	-0.7
3,720,678	-		DZA65_RS17240	0.78	-0.8
3,720,678	-		DZA65_RS17240	0.78	-0.4
3,720,694	+		DZA65_RS17240	0.80	+1.0
3,720,694	+		DZA65_RS17240	0.80	-1.3
3,720,695	-		DZA65_RS17240	0.80	+0.4
3,720,695	-		DZA65_RS17240	0.80	+1.6
3,720,695	-		DZA65_RS17240	0.80	+0.2
3,720,695	-		DZA65_RS17240	0.80	+0.6
3,720,695	-		DZA65_RS17240	0.80	-0.6
3,720,695	-		DZA65_RS17240	0.80	-0.6
3,720,695	-		DZA65_RS17240	0.80	-1.0
3,720,696	+		DZA65_RS17240	0.80	+3.3
3,720,696	+		DZA65_RS17240	0.80	-2.3
3,720,696	+		DZA65_RS17240	0.80	-2.3
3,720,696	+		DZA65_RS17240	0.80	-0.4
3,720,696	+		DZA65_RS17240	0.80	+0.7
3,720,696	+		DZA65_RS17240	0.80	-0.5
3,720,696	+		DZA65_RS17240	0.80	-0.2
3,720,697	-		DZA65_RS17240	0.80	+2.0
3,720,697	-		DZA65_RS17240	0.80	+1.1
3,720,697	-		DZA65_RS17240	0.80	-0.7
3,720,697	-		DZA65_RS17240	0.80	+0.4
3,720,697	-		DZA65_RS17240	0.80	+1.5
3,720,697	-		DZA65_RS17240	0.80	-0.8
3,720,697	-		DZA65_RS17240	0.80	+0.2
3,720,697	-		DZA65_RS17240	0.80	-2.6
3,720,737	+		DZA65_RS17240	0.84	-1.3
3,720,738	-		DZA65_RS17240	0.84	-1.0
3,720,838	+				-0.1
3,720,838	+				-1.1
3,720,838	+				+0.0
3,720,838	+				-0.1
3,720,838	+				-2.1
3,720,838	+				-0.1
3,720,838	+				+0.0
3,720,838	+				+0.1
3,720,839	-				-1.8
3,720,839	-				-1.0
3,720,839	-				+2.3
3,720,839	-				+0.7
3,720,839	-				-0.8
3,720,996	+		DZA65_RS17245	0.71	+1.0
3,721,009	+		DZA65_RS17245	0.88	+0.2
3,721,032	+				-1.3
3,721,032	+				-1.5
3,721,032	+				+1.0
3,721,032	+				+2.2
3,721,032	+				-0.3
3,721,032	+				+0.2
3,721,032	+				-1.6
3,721,033	-				+0.9
3,721,033	-				-1.2
3,721,033	-				-2.4
3,721,033	-				+1.3
3,721,033	-				-0.2
3,721,067	+				-0.1
3,721,068	-				-0.2
3,721,091	+				+0.2
3,721,856	-				+0.6
3,721,882	-		DZA65_RS17255	0.10	+0.0