Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS17205

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,712,070	+		DZA65_RS17200	0.22	-0.8
3,712,070	+		DZA65_RS17200	0.22	-1.3
3,712,088	-		DZA65_RS17200	0.24	+0.4
3,712,166	+		DZA65_RS17200	0.31	-0.1
3,712,166	+		DZA65_RS17200	0.31	+0.4
3,712,166	+		DZA65_RS17200	0.31	+0.1
3,712,166	+		DZA65_RS17200	0.31	+0.6
3,712,167	-		DZA65_RS17200	0.31	-0.3
3,712,167	-		DZA65_RS17200	0.31	-0.3
3,712,167	-		DZA65_RS17200	0.31	-0.5
3,712,167	-		DZA65_RS17200	0.31	-0.2
3,712,167	-		DZA65_RS17200	0.31	+0.6
3,712,167	-		DZA65_RS17200	0.31	+0.9
3,712,167	-		DZA65_RS17200	0.31	+1.2
3,712,182	+		DZA65_RS17200	0.33	+0.2
3,712,183	-		DZA65_RS17200	0.33	+0.6
3,712,217	+		DZA65_RS17200	0.36	+1.3
3,712,217	+		DZA65_RS17200	0.36	+0.6
3,712,218	-		DZA65_RS17200	0.36	+1.0
3,712,218	-		DZA65_RS17200	0.36	+1.7
3,712,218	-		DZA65_RS17200	0.36	+0.5
3,712,218	-		DZA65_RS17200	0.36	-0.1
3,712,323	+		DZA65_RS17200	0.46	-0.3
3,712,323	+		DZA65_RS17200	0.46	-0.8
3,712,323	+		DZA65_RS17200	0.46	-1.8
3,712,324	-		DZA65_RS17200	0.46	-1.1
3,712,324	-		DZA65_RS17200	0.46	+0.3
3,712,324	-		DZA65_RS17200	0.46	+0.4
3,712,324	-		DZA65_RS17200	0.46	+1.2
3,712,354	+		DZA65_RS17200	0.49	-0.8
3,712,354	+		DZA65_RS17200	0.49	-0.8
3,712,354	+		DZA65_RS17200	0.49	+0.7
3,712,355	-		DZA65_RS17200	0.49	-0.4
3,712,420	+		DZA65_RS17200	0.55	+0.2
3,712,421	-				+0.7
3,712,421	-		DZA65_RS17200	0.55	-1.6
3,712,487	+		DZA65_RS17200	0.62	-0.0
3,712,487	+		DZA65_RS17200	0.62	+0.2
3,712,487	+		DZA65_RS17200	0.62	-0.6
3,712,488	-		DZA65_RS17200	0.62	-0.5
3,712,488	-		DZA65_RS17200	0.62	-1.4
3,712,590	+		DZA65_RS17200	0.71	+2.1
3,712,606	+		DZA65_RS17200	0.73	-0.1
3,712,606	+		DZA65_RS17200	0.73	+1.2
3,712,607	-		DZA65_RS17200	0.73	+0.6
3,712,607	-		DZA65_RS17200	0.73	+1.1
3,712,607	-		DZA65_RS17200	0.73	+0.7
3,712,607	-		DZA65_RS17200	0.73	+1.5
3,712,607	-		DZA65_RS17200	0.73	+0.7
3,712,708	+		DZA65_RS17200	0.82	+1.7
3,712,709	-		DZA65_RS17200	0.82	+0.5
3,712,709	-		DZA65_RS17200	0.82	+0.3
3,712,751	-		DZA65_RS17200	0.86	+1.5
3,712,751	-		DZA65_RS17200	0.86	-0.8
3,712,764	+		DZA65_RS17200	0.88	-0.3
3,712,764	+		DZA65_RS17200	0.88	-1.2
3,712,764	+		DZA65_RS17200	0.88	-0.5
3,712,870	+				+0.7
3,712,871	-				-2.3
3,712,876	+				+0.2
3,712,896	+				-1.1
3,712,897	-				+1.2
3,712,901	+				-0.1
3,712,901	+				-2.7
3,712,901	+				-1.0
3,712,901	+				+2.0
3,712,901	+				+0.4
3,712,901	+				-0.0
3,712,901	+				+1.4
3,712,901	+				-1.8
3,712,901	+				+0.6
3,712,901	+				+0.8
3,712,901	+				+1.0
3,712,901	+				+0.4
3,712,902	-				-1.1
3,712,902	-				-0.3
3,712,902	-				+1.0
3,712,902	-				-0.4
3,712,902	-				+1.2
3,712,902	-				-0.0
3,712,905	+				-0.3
3,712,905	+				+1.0
3,712,905	+				-3.0
3,712,905	+				-0.6
3,712,905	+				+0.2
3,712,906	-				-1.1
3,713,025	+				+0.7
3,713,025	+				-2.6
3,713,025	+				+0.1
3,713,025	+				+1.2
3,713,025	+				-0.5
3,713,025	+				-1.7
3,713,025	+				+0.5
3,713,026	-				-1.1
3,713,026	-				-0.5
3,713,026	-				+0.2
3,713,026	-				+0.2
3,713,026	-				-0.8
3,713,026	-				-0.6
3,713,035	+				+0.3
3,713,036	-				-1.6
3,713,145	+		DZA65_RS17205	0.15	+0.2
3,713,156	+		DZA65_RS17205	0.16	+1.1
3,713,156	+		DZA65_RS17205	0.16	-0.8
3,713,156	+		DZA65_RS17205	0.16	-0.4
3,713,156	+		DZA65_RS17205	0.16	+2.7
3,713,156	+		DZA65_RS17205	0.16	-0.8
3,713,157	-		DZA65_RS17205	0.16	+0.2
3,713,157	-		DZA65_RS17205	0.16	-0.2
3,713,163	-		DZA65_RS17205	0.16	+2.7
3,713,173	+		DZA65_RS17205	0.17	-0.3
3,713,173	+		DZA65_RS17205	0.17	-1.4
3,713,173	+		DZA65_RS17205	0.17	-0.5
3,713,173	+		DZA65_RS17205	0.17	+0.2
3,713,173	+		DZA65_RS17205	0.17	-0.1
3,713,174	-		DZA65_RS17205	0.17	+1.0
3,713,174	-		DZA65_RS17205	0.17	-2.5
3,713,174	-		DZA65_RS17205	0.17	-3.0
3,713,271	+		DZA65_RS17205	0.23	+0.6
3,713,272	-		DZA65_RS17205	0.23	+1.3
3,713,437	-		DZA65_RS17205	0.33	-1.0
3,713,437	-		DZA65_RS17205	0.33	+0.2
3,713,474	+		DZA65_RS17205	0.35	+1.1
3,713,474	+		DZA65_RS17205	0.35	-1.6
3,713,474	+		DZA65_RS17205	0.35	-2.2
3,713,475	-		DZA65_RS17205	0.36	-2.2
3,713,475	-		DZA65_RS17205	0.36	-0.7
3,713,475	-		DZA65_RS17205	0.36	-0.1
3,713,475	-		DZA65_RS17205	0.36	+1.2
3,713,475	-		DZA65_RS17205	0.36	+0.6
3,713,527	+		DZA65_RS17205	0.39	+0.5
3,713,528	-		DZA65_RS17205	0.39	-1.3
3,713,579	+		DZA65_RS17205	0.42	+0.1
3,713,579	+		DZA65_RS17205	0.42	-1.4
3,713,580	-		DZA65_RS17205	0.42	+0.9
3,713,580	-		DZA65_RS17205	0.42	-1.3
3,713,580	-		DZA65_RS17205	0.42	-0.9
3,713,648	+		DZA65_RS17205	0.46	+1.3
3,713,648	+		DZA65_RS17205	0.46	-1.9
3,713,649	-		DZA65_RS17205	0.46	+0.3
3,713,649	-		DZA65_RS17205	0.46	-1.6
3,713,699	+		DZA65_RS17205	0.49	-1.5
3,713,760	-		DZA65_RS17205	0.53	-1.3
3,713,760	-		DZA65_RS17205	0.53	+0.7
3,713,795	+		DZA65_RS17205	0.55	+0.2
3,713,796	-		DZA65_RS17205	0.55	+0.7
3,713,854	+		DZA65_RS17205	0.59	-0.7
3,713,854	+		DZA65_RS17205	0.59	-0.7
3,713,854	+		DZA65_RS17205	0.59	-0.8
3,713,854	+		DZA65_RS17205	0.59	+0.5
3,713,854	+		DZA65_RS17205	0.59	-0.5
3,713,855	-		DZA65_RS17205	0.59	-0.4
3,713,855	-		DZA65_RS17205	0.59	-1.3
3,713,881	+		DZA65_RS17205	0.61	+0.3
3,713,882	-		DZA65_RS17205	0.61	+0.3
3,714,047	+		DZA65_RS17205	0.71	-1.3
3,714,047	+		DZA65_RS17205	0.71	+0.1
3,714,054	+		DZA65_RS17205	0.72	-1.2
3,714,054	+		DZA65_RS17205	0.72	-0.3
3,714,054	+		DZA65_RS17205	0.72	-2.0
3,714,054	+		DZA65_RS17205	0.72	+1.4
3,714,055	-		DZA65_RS17205	0.72	-0.1
3,714,055	-		DZA65_RS17205	0.72	-2.1
3,714,145	+		DZA65_RS17205	0.77	-0.8
3,714,162	+		DZA65_RS17205	0.78	+1.3
3,714,163	-		DZA65_RS17205	0.78	+2.2
3,714,190	-		DZA65_RS17205	0.80	-0.5
3,714,208	-		DZA65_RS17205	0.81	+0.2
3,714,208	-		DZA65_RS17205	0.81	+1.7
3,714,338	+		DZA65_RS17205	0.89	-2.3
3,714,338	+		DZA65_RS17205	0.89	+0.2
3,714,338	+		DZA65_RS17205	0.89	-1.4
3,714,339	-		DZA65_RS17205	0.89	+0.9
3,714,339	-		DZA65_RS17205	0.89	-0.6
3,714,339	-		DZA65_RS17205	0.89	+1.4
3,714,375	+				+1.7
3,714,458	+				+0.7
3,714,458	+				+0.2
3,714,459	-				+1.2
3,714,459	-				-0.7
3,714,459	-				+1.8
3,714,484	+				+0.4
3,714,485	-				-0.8
3,714,485	-				-0.4
3,714,485	-				+0.7
3,714,499	+				-0.7
3,714,500	-				-2.3
3,714,526	+				-2.6
3,714,526	+				-0.4
3,714,526	+				-0.4
3,714,532	+				+1.2
3,714,533	-				-0.1
3,714,542	+				+0.4
3,714,542	+				+1.3
3,714,542	+				-0.1
3,714,545	+				+0.7
3,714,545	+				+0.5
3,714,545	+				-1.7
3,714,545	+				-0.3
3,714,545	+				-1.3
3,714,546	-				-0.0
3,714,546	-				+0.9
3,714,546	-				-0.8
3,714,548	+				+0.2
3,714,549	-				-0.3
3,714,575	+				-0.3
3,714,576	-				-0.2
3,714,576	-				-1.6
3,714,576	-				-0.3
3,714,588	+				+1.0
3,714,588	+				+1.4
3,714,588	+				-0.9
3,714,588	+				-0.5
3,714,589	-				+1.1
3,714,593	-				+0.4
3,714,593	-				-0.7
3,714,593	-				-3.3
3,714,599	+				-1.2
3,714,617	+				+1.7
3,714,617	+				-1.3
3,714,617	+				-1.1
3,714,617	+				-0.3
3,714,617	+				-0.7
3,714,617	+				+1.2
3,714,617	+				+1.0
3,714,617	+				-1.8
3,714,617	+				-1.1
3,714,618	-				+0.2
3,714,618	-				-1.6
3,714,618	-				-1.1
3,714,618	-				+0.5
3,714,618	-				+1.1
3,714,618	-				-0.0
3,714,618	-				-0.6
3,714,618	-				-0.0
3,714,618	-				-1.3
3,714,618	-				+0.5
3,714,618	-				+0.6
3,714,618	-				-2.4
3,714,618	-				-1.8
3,714,618	-				-1.7
3,714,680	+				-0.3
3,714,680	+				-1.6
3,714,680	+				+1.3
3,714,681	-				-0.1
3,714,681	-				+0.1
3,714,681	-				+1.3
3,714,683	+				-0.6
3,714,724	+				-0.7
3,714,724	+				+1.5
3,714,724	+				+0.5
3,714,724	+				-2.1
3,714,724	+				-0.1
3,714,724	+				-1.1
3,714,724	+				+1.3
3,714,724	+				+0.5
3,714,725	-				+1.5
3,714,725	-				+0.9
3,714,725	-				-0.8
3,714,725	-				+0.6
3,714,725	-				-1.5
3,714,725	-				+0.4
3,714,725	-				+0.3
3,714,749	+				+0.2
3,714,749	+				-0.0
3,714,750	-				+0.7
3,714,858	-		DZA65_RS17210	0.31	+0.7
3,714,858	-		DZA65_RS17210	0.31	-2.4
3,714,858	-		DZA65_RS17210	0.31	-0.0
3,714,867	+		DZA65_RS17210	0.34	-0.8
3,714,868	-		DZA65_RS17210	0.34	-0.8
3,714,888	+		DZA65_RS17210	0.40	+0.2
3,714,888	+		DZA65_RS17210	0.40	+0.4
3,714,966	+		DZA65_RS17210	0.62	-3.2
3,714,966	+		DZA65_RS17210	0.62	+1.2
3,714,966	+		DZA65_RS17210	0.62	+1.0
3,714,966	+		DZA65_RS17210	0.62	-0.1
3,714,967	-		DZA65_RS17210	0.62	+1.0
3,714,967	-		DZA65_RS17210	0.62	-0.6
3,714,967	-		DZA65_RS17210	0.62	+0.3
3,714,967	-		DZA65_RS17210	0.62	-2.0
3,714,967	-		DZA65_RS17210	0.62	-0.1
3,714,967	-		DZA65_RS17210	0.62	+0.3
3,714,967	-		DZA65_RS17210	0.62	+0.3
3,714,981	-		DZA65_RS17210	0.66	-0.8
3,715,006	-		DZA65_RS17210	0.74	+0.1
3,715,053	+		DZA65_RS17210	0.87	-0.6
3,715,053	+		DZA65_RS17210	0.87	+1.2
3,715,054	-		DZA65_RS17210	0.87	+0.9
3,715,054	-		DZA65_RS17210	0.87	-2.6
3,715,054	-		DZA65_RS17210	0.87	+1.1
3,715,054	-		DZA65_RS17210	0.87	-0.6
3,715,103	-				+0.5
3,715,152	+				-0.5
3,715,152	+				-0.8
3,715,152	+				-1.8
3,715,152	+				+0.6
3,715,152	+				-1.6
3,715,152	+				-1.6
3,715,152	+				+0.9
3,715,153	-				-0.1
3,715,153	-				+0.7
3,715,153	-				+3.2
3,715,153	-				+0.3
3,715,153	-				+0.7
3,715,153	-				-0.8
3,715,153	-				-0.3
3,715,153	-				-3.1
3,715,153	-				+0.2
3,715,156	+				+2.1
3,715,156	+				+0.2
3,715,156	+				+1.1
3,715,156	+				-2.4
3,715,157	-				-0.3
3,715,157	-				-2.6
3,715,161	+				+0.1
3,715,162	-				-0.5
3,715,162	-				+1.1
3,715,162	-				-0.1
3,715,162	-				+1.3
3,715,186	-				+0.4
3,715,203	-				-0.0
3,715,281	+				-1.3
3,715,281	+				-0.8
3,715,281	+				+1.3
3,715,281	+				-0.8
3,715,281	+				-0.4
3,715,281	+				-0.3
3,715,281	+				+0.7
3,715,281	+				-0.8
3,715,282	-				-0.1
3,715,282	-				-2.3
3,715,282	-				+0.3
3,715,343	+		DZA65_RS17215	0.16	+1.7
3,715,392	+		DZA65_RS17215	0.22	-0.0
3,715,392	+		DZA65_RS17215	0.22	-1.4
3,715,392	+		DZA65_RS17215	0.22	+0.2
3,715,393	-		DZA65_RS17215	0.22	+0.4
3,715,393	-		DZA65_RS17215	0.22	-1.7
3,715,507	+		DZA65_RS17215	0.35	+0.3
3,715,507	+		DZA65_RS17215	0.35	+1.0
3,715,507	+		DZA65_RS17215	0.35	-1.7
3,715,507	+		DZA65_RS17215	0.35	-1.7
3,715,507	+		DZA65_RS17215	0.35	+0.2
3,715,507	+		DZA65_RS17215	0.35	-1.1
3,715,507	+		DZA65_RS17215	0.35	+0.9
3,715,507	+		DZA65_RS17215	0.35	+1.0
3,715,507	+		DZA65_RS17215	0.35	+0.5
3,715,507	+		DZA65_RS17215	0.35	-0.7
3,715,507	+		DZA65_RS17215	0.35	+0.0
3,715,507	+		DZA65_RS17215	0.35	+0.5
3,715,508	-		DZA65_RS17215	0.35	-0.1
3,715,508	-		DZA65_RS17215	0.35	+0.6
3,715,508	-				-0.8
3,715,508	-		DZA65_RS17215	0.35	+1.6
3,715,508	-		DZA65_RS17215	0.35	+1.2
3,715,508	-		DZA65_RS17215	0.35	-0.3
3,715,508	-		DZA65_RS17215	0.35	+0.4
3,715,508	-		DZA65_RS17215	0.35	-0.3
3,715,508	-		DZA65_RS17215	0.35	-2.7