Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16615

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,585,675	+		DZA65_RS16610	0.44	-1.9
3,585,676	-		DZA65_RS16610	0.45	-0.9
3,585,676	-		DZA65_RS16610	0.45	-1.3
3,585,676	-		DZA65_RS16610	0.45	-1.1
3,585,708	-		DZA65_RS16610	0.47	-1.6
3,585,756	+		DZA65_RS16610	0.50	-2.8
3,585,756	+		DZA65_RS16610	0.50	-0.9
3,585,756	+		DZA65_RS16610	0.50	-3.2
3,585,756	+		DZA65_RS16610	0.50	-1.9
3,585,756	+		DZA65_RS16610	0.50	-0.6
3,585,756	+		DZA65_RS16610	0.50	-1.9
3,585,757	-		DZA65_RS16610	0.50	+1.3
3,585,757	-				-1.3
3,585,757	-		DZA65_RS16610	0.50	-0.9
3,585,757	-		DZA65_RS16610	0.50	-2.3
3,585,757	-		DZA65_RS16610	0.50	-1.9
3,585,757	-		DZA65_RS16610	0.50	-3.3
3,585,757	-		DZA65_RS16610	0.50	-2.3
3,585,757	-		DZA65_RS16610	0.50	-2.1
3,585,757	-		DZA65_RS16610	0.50	+0.1
3,585,788	+		DZA65_RS16610	0.52	-1.6
3,585,788	+		DZA65_RS16610	0.52	+0.7
3,585,788	+		DZA65_RS16610	0.52	-3.5
3,585,788	+		DZA65_RS16610	0.52	-2.5
3,585,788	+		DZA65_RS16610	0.52	-2.9
3,585,788	+		DZA65_RS16610	0.52	-1.3
3,585,788	+		DZA65_RS16610	0.52	-0.3
3,585,789	-		DZA65_RS16610	0.52	-3.7
3,585,789	-		DZA65_RS16610	0.52	-0.7
3,585,789	-		DZA65_RS16610	0.52	-0.5
3,585,789	-		DZA65_RS16610	0.52	-1.9
3,585,789	-		DZA65_RS16610	0.52	-0.9
3,585,854	+		DZA65_RS16610	0.57	-1.1
3,585,855	-		DZA65_RS16610	0.57	-1.6
3,585,855	-		DZA65_RS16610	0.57	-2.5
3,585,870	-		DZA65_RS16610	0.58	-1.2
3,585,894	+		DZA65_RS16610	0.59	-2.5
3,585,895	-		DZA65_RS16610	0.59	-2.9
3,585,934	-		DZA65_RS16610	0.62	-2.6
3,586,002	+		DZA65_RS16610	0.67	-1.9
3,586,002	+		DZA65_RS16610	0.67	-1.6
3,586,003	-		DZA65_RS16610	0.67	-1.1
3,586,092	-		DZA65_RS16610	0.73	-2.4
3,586,175	+		DZA65_RS16610	0.79	-1.3
3,586,175	+		DZA65_RS16610	0.79	+0.9
3,586,175	+		DZA65_RS16610	0.79	-0.3
3,586,262	+		DZA65_RS16610	0.85	-1.3
3,586,280	+		DZA65_RS16610	0.86	-0.6
3,586,281	-		DZA65_RS16610	0.86	-2.2
3,586,281	-		DZA65_RS16610	0.86	-0.6
3,586,395	-				-1.0
3,586,424	+				-2.6
3,586,424	+				-2.1
3,586,424	+				-1.3
3,586,425	-				-0.5
3,586,472	+				-0.9
3,586,472	+				+1.3
3,586,473	-				-0.3
3,586,482	+				-2.2
3,586,482	+				-1.3
3,586,482	+				-1.8
3,586,482	+				-0.3
3,586,482	+				-1.6
3,586,483	-				-3.0
3,586,483	-				-2.1
3,586,483	-				-0.5
3,586,483	-				-1.0
3,586,483	-				+0.1
3,586,483	-				-1.6
3,586,483	-				-2.4
3,586,483	-				-2.8
3,586,483	-				-0.9
3,586,483	-				-1.5
3,586,483	-				+1.3
3,586,483	-				-0.3
3,586,487	+				-1.1
3,586,487	+				-0.9
3,586,487	+				-1.8
3,586,487	+				-0.9
3,586,487	+				-2.1
3,586,487	+				-2.1
3,586,487	+				-1.5
3,586,487	+				-1.5
3,586,487	+				-1.3
3,586,488	-				-0.9
3,586,488	-				-1.3
3,586,488	-				-2.1
3,586,488	-				-1.9
3,586,488	-				-1.9
3,586,488	-				+1.3
3,586,488	-				+1.4
3,586,488	-				-1.3
3,586,488	-				-1.3
3,586,488	-				-0.3
3,586,493	+				+0.3
3,586,493	+				-0.0
3,586,493	+				-2.3
3,586,493	+				-3.6
3,586,493	+				-2.4
3,586,494	-				-1.6
3,586,519	+				-1.2
3,586,519	+				-1.9
3,586,519	+				-2.3
3,586,523	+				+0.2
3,586,523	+				+0.3
3,586,523	+				+0.5
3,586,528	+				-1.1
3,586,542	+				+0.4
3,586,542	+				-0.3
3,586,543	-				-0.0
3,586,543	-				-1.6
3,586,544	+				+0.1
3,586,544	+				-1.9
3,586,544	+				+1.3
3,586,544	+				+0.5
3,586,544	+				+0.1
3,586,545	-				-1.3
3,586,545	-				-0.6
3,586,545	-				-1.1
3,586,545	-				-0.6
3,586,615	-				-1.4
3,586,626	-				-0.3
3,586,684	+				+0.8
3,586,685	-				+2.4
3,586,688	+				+1.4
3,586,800	+		DZA65_RS16615	0.10	+1.0
3,586,806	-		DZA65_RS16615	0.11	+0.4
3,586,806	-		DZA65_RS16615	0.11	-2.3
3,586,806	-		DZA65_RS16615	0.11	-1.2
3,586,806	-		DZA65_RS16615	0.11	-1.5
3,586,923	+		DZA65_RS16615	0.19	-0.8
3,586,923	+		DZA65_RS16615	0.19	+0.7
3,586,923	+				-1.3
3,586,923	+		DZA65_RS16615	0.19	-1.9
3,586,924	-		DZA65_RS16615	0.19	-0.3
3,586,941	+		DZA65_RS16615	0.20	-0.1
3,586,961	+		DZA65_RS16615	0.22	-0.4
3,586,961	+		DZA65_RS16615	0.22	-1.3
3,586,962	-		DZA65_RS16615	0.22	+0.0
3,586,962	-		DZA65_RS16615	0.22	-0.2
3,586,962	-				-0.1
3,586,987	+		DZA65_RS16615	0.24	+0.8
3,586,987	+		DZA65_RS16615	0.24	-0.2
3,586,987	+		DZA65_RS16615	0.24	-0.5
3,586,987	+		DZA65_RS16615	0.24	+1.3
3,586,987	+		DZA65_RS16615	0.24	+1.4
3,586,987	+		DZA65_RS16615	0.24	+1.3
3,586,988	-		DZA65_RS16615	0.24	-1.4
3,586,988	-		DZA65_RS16615	0.24	-1.3
3,586,988	-		DZA65_RS16615	0.24	+1.5
3,587,049	+		DZA65_RS16615	0.28	-0.2
3,587,049	+		DZA65_RS16615	0.28	+2.1
3,587,049	+		DZA65_RS16615	0.28	-1.9
3,587,049	+		DZA65_RS16615	0.28	-0.6
3,587,049	+		DZA65_RS16615	0.28	+1.7
3,587,049	+		DZA65_RS16615	0.28	+1.4
3,587,049	+		DZA65_RS16615	0.28	-0.8
3,587,049	+		DZA65_RS16615	0.28	-1.8
3,587,050	-		DZA65_RS16615	0.28	+0.4
3,587,050	-		DZA65_RS16615	0.28	-0.3
3,587,050	-		DZA65_RS16615	0.28	+0.1
3,587,050	-		DZA65_RS16615	0.28	+0.1
3,587,050	-		DZA65_RS16615	0.28	+0.1
3,587,050	-		DZA65_RS16615	0.28	+1.2
3,587,050	-		DZA65_RS16615	0.28	-1.3
3,587,091	-		DZA65_RS16615	0.31	-0.3
3,587,091	-		DZA65_RS16615	0.31	-1.6
3,587,091	-		DZA65_RS16615	0.31	-2.6
3,587,093	+		DZA65_RS16615	0.31	+1.3
3,587,094	-		DZA65_RS16615	0.31	-1.6
3,587,094	-		DZA65_RS16615	0.31	-0.2
3,587,172	+		DZA65_RS16615	0.37	+1.8
3,587,172	+		DZA65_RS16615	0.37	-0.6
3,587,172	+		DZA65_RS16615	0.37	+0.7
3,587,173	-		DZA65_RS16615	0.37	-1.5
3,587,296	+		DZA65_RS16615	0.46	-2.1
3,587,296	+				-0.1
3,587,296	+		DZA65_RS16615	0.46	-1.9
3,587,296	+		DZA65_RS16615	0.46	+0.5
3,587,296	+		DZA65_RS16615	0.46	+1.1
3,587,296	+		DZA65_RS16615	0.46	-0.6
3,587,296	+		DZA65_RS16615	0.46	-3.1
3,587,296	+		DZA65_RS16615	0.46	-1.8
3,587,297	-		DZA65_RS16615	0.46	-0.3
3,587,297	-		DZA65_RS16615	0.46	-1.5
3,587,297	-		DZA65_RS16615	0.46	-1.6
3,587,297	-		DZA65_RS16615	0.46	-0.8
3,587,297	-		DZA65_RS16615	0.46	-1.1
3,587,517	+		DZA65_RS16615	0.62	+0.7
3,587,517	+		DZA65_RS16615	0.62	-1.0
3,587,517	+		DZA65_RS16615	0.62	+1.4
3,587,517	+		DZA65_RS16615	0.62	+0.5
3,587,517	+		DZA65_RS16615	0.62	+1.1
3,587,517	+		DZA65_RS16615	0.62	-1.9
3,587,517	+		DZA65_RS16615	0.62	-0.9
3,587,518	-		DZA65_RS16615	0.62	+2.3
3,587,518	-		DZA65_RS16615	0.62	-1.1
3,587,518	-		DZA65_RS16615	0.62	-0.2
3,587,518	-		DZA65_RS16615	0.62	-0.7
3,587,520	+		DZA65_RS16615	0.62	+0.5
3,587,520	+		DZA65_RS16615	0.62	-0.5
3,587,521	-		DZA65_RS16615	0.62	-0.3
3,587,521	-		DZA65_RS16615	0.62	-0.6
3,587,521	-		DZA65_RS16615	0.62	-0.7
3,587,521	-		DZA65_RS16615	0.62	+1.0
3,587,659	+		DZA65_RS16615	0.72	+0.7
3,587,659	+		DZA65_RS16615	0.72	-1.1
3,587,659	+		DZA65_RS16615	0.72	+0.1
3,587,660	-		DZA65_RS16615	0.72	+1.7
3,587,660	-		DZA65_RS16615	0.72	-2.3
3,587,660	-				-0.3
3,587,749	+		DZA65_RS16615	0.79	-1.0
3,587,749	+		DZA65_RS16615	0.79	-0.9
3,587,750	-		DZA65_RS16615	0.79	-1.3
3,587,750	-		DZA65_RS16615	0.79	+1.3
3,587,750	-		DZA65_RS16615	0.79	+0.1
3,587,750	-		DZA65_RS16615	0.79	-0.5
3,587,750	-		DZA65_RS16615	0.79	+0.7
3,587,750	-		DZA65_RS16615	0.79	+0.2
3,587,750	-				+2.3
3,587,750	-		DZA65_RS16615	0.79	+0.8
3,587,750	-		DZA65_RS16615	0.79	-0.6
3,587,750	-		DZA65_RS16615	0.79	-0.9
3,587,805	-		DZA65_RS16615	0.83	+1.8
3,587,915	+				+1.3
3,587,915	+				+1.1
3,587,939	+				+2.5
3,587,939	+				+0.7
3,587,983	+				-0.9
3,588,005	+				-3.5
3,588,049	+				+0.5
3,588,054	+				+0.9
3,588,055	-				-1.0
3,588,056	+				-1.1
3,588,056	+				+0.5
3,588,056	+				-1.2
3,588,056	+				-0.3
3,588,056	+				+1.4
3,588,056	+				-0.9
3,588,056	+				-1.3
3,588,056	+				-1.3
3,588,056	+				-1.4
3,588,056	+				-0.6
3,588,056	+				+2.5
3,588,056	+				+0.3
3,588,056	+				+1.5
3,588,056	+				-0.3
3,588,056	+				+1.9
3,588,057	-				-2.1
3,588,057	-				-2.8
3,588,057	-				-0.3
3,588,057	-				-1.2
3,588,057	-				+1.5
3,588,057	-				-0.5
3,588,057	-				-2.2
3,588,057	-				-0.1
3,588,057	-				+0.5
3,588,057	-				+0.2
3,588,057	-				-0.4
3,588,061	-				+0.1
3,588,070	+				-1.4
3,588,070	+				-0.3
3,588,070	+				+0.7
3,588,071	-				-0.9
3,588,080	-				-0.4
3,588,093	+				+0.5
3,588,094	-				+0.1
3,588,094	-				-0.2
3,588,094	-				-0.5
3,588,096	+				+1.3
3,588,096	+				+0.5
3,588,096	+				-0.5
3,588,097	-				-0.4
3,588,097	-				-1.6
3,588,097	-				+0.5
3,588,097	-				-0.5
3,588,111	-				+0.5
3,588,123	-				-1.1
3,588,135	+				-0.4
3,588,135	+				-0.2
3,588,135	+				+0.3
3,588,135	+				-0.1
3,588,135	+				-1.6
3,588,136	-				-2.0
3,588,136	-				+3.3
3,588,166	+				+1.2
3,588,166	+				+0.7
3,588,167	-				-1.3
3,588,167	-				+2.1
3,588,167	-				-2.0
3,588,167	-				+2.0
3,588,167	-				-0.9
3,588,168	+				+1.3
3,588,168	+				-2.1
3,588,168	+				-0.9
3,588,183	+				+0.7
3,588,183	+				+0.5
3,588,184	-				+0.1
3,588,185	+				-0.3
3,588,185	+				+2.2
3,588,185	+				+0.5
3,588,185	+				+0.7
3,588,186	-				+0.7
3,588,186	-				-0.1
3,588,186	-				-0.6
3,588,186	-				-0.1
3,588,319	+		DZA65_RS16620	0.17	-0.5
3,588,415	+		DZA65_RS16620	0.27	-0.3
3,588,426	+		DZA65_RS16620	0.28	+0.5
3,588,426	+		DZA65_RS16620	0.28	-1.1
3,588,426	+		DZA65_RS16620	0.28	+0.9
3,588,426	+		DZA65_RS16620	0.28	+1.0
3,588,427	-		DZA65_RS16620	0.28	+1.1
3,588,427	-		DZA65_RS16620	0.28	-0.1
3,588,427	-		DZA65_RS16620	0.28	+1.2
3,588,427	-		DZA65_RS16620	0.28	-1.8
3,588,427	-		DZA65_RS16620	0.28	-1.9
3,588,427	-		DZA65_RS16620	0.28	-1.9
3,588,427	-		DZA65_RS16620	0.28	+1.5
3,588,431	-		DZA65_RS16620	0.28	-1.3
3,588,431	-		DZA65_RS16620	0.28	-0.3
3,588,431	-		DZA65_RS16620	0.28	+1.3
3,588,431	-		DZA65_RS16620	0.28	+0.4
3,588,599	+		DZA65_RS16620	0.44	-1.4
3,588,599	+		DZA65_RS16620	0.44	-1.3
3,588,649	-		DZA65_RS16620	0.49	+0.7
3,588,649	-		DZA65_RS16620	0.49	-0.2
3,588,658	+		DZA65_RS16620	0.50	-0.4
3,588,658	+		DZA65_RS16620	0.50	+0.5
3,588,658	+		DZA65_RS16620	0.50	+2.1
3,588,658	+		DZA65_RS16620	0.50	-0.8
3,588,658	+		DZA65_RS16620	0.50	+0.2
3,588,658	+		DZA65_RS16620	0.50	-0.6
3,588,659	-		DZA65_RS16620	0.50	+0.2
3,588,712	-		DZA65_RS16620	0.55	+0.7
3,588,712	-		DZA65_RS16620	0.55	+1.8
3,588,712	-		DZA65_RS16620	0.55	+1.3
3,588,724	+		DZA65_RS16620	0.56	-1.3
3,588,724	+		DZA65_RS16620	0.56	+1.4
3,588,724	+		DZA65_RS16620	0.56	-0.3
3,588,725	-		DZA65_RS16620	0.56	+0.2
3,588,725	-		DZA65_RS16620	0.56	+1.1
3,588,725	-		DZA65_RS16620	0.56	+0.4
3,588,725	-		DZA65_RS16620	0.56	-0.9
3,588,728	-		DZA65_RS16620	0.56	-0.6
3,588,728	-		DZA65_RS16620	0.56	+0.9
3,588,728	-		DZA65_RS16620	0.56	+1.0
3,588,732	+		DZA65_RS16620	0.57	-0.4
3,588,743	+		DZA65_RS16620	0.58	+0.7
3,588,743	+		DZA65_RS16620	0.58	-0.1
3,588,744	-		DZA65_RS16620	0.58	+0.5
3,588,744	-				-0.9
3,588,835	+		DZA65_RS16620	0.67	-0.5
3,588,835	+		DZA65_RS16620	0.67	-0.7
3,588,835	+				+0.7
3,588,952	+		DZA65_RS16620	0.78	+0.8
3,588,952	+		DZA65_RS16620	0.78	-1.3
3,588,952	+		DZA65_RS16620	0.78	-0.3
3,588,953	-		DZA65_RS16620	0.78	-1.5
3,588,953	-		DZA65_RS16620	0.78	-1.3
3,588,953	-		DZA65_RS16620	0.78	+0.6
3,588,953	-		DZA65_RS16620	0.78	+0.3
3,588,953	-		DZA65_RS16620	0.78	+1.8
3,589,002	+		DZA65_RS16620	0.82	-0.3
3,589,002	+		DZA65_RS16620	0.82	-1.3
3,589,002	+		DZA65_RS16620	0.82	-0.9
3,589,002	+		DZA65_RS16620	0.82	-0.5
3,589,002	+		DZA65_RS16620	0.82	-1.9
3,589,003	-		DZA65_RS16620	0.83	+0.5
3,589,003	-		DZA65_RS16620	0.83	-1.3
3,589,003	-		DZA65_RS16620	0.83	+0.7
3,589,003	-		DZA65_RS16620	0.83	+0.2
3,589,003	-		DZA65_RS16620	0.83	-0.8
3,589,003	-		DZA65_RS16620	0.83	-0.1