Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS16325

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,538,004	+				+0.1
3,538,004	+				+3.2
3,538,013	+				-0.2
3,538,016	+				-1.5
3,538,017	-				+0.4
3,538,040	-				+1.2
3,538,123	-				+3.0
3,538,123	-				-2.3
3,538,187	+		DZA65_RS16320	0.17	-0.9
3,538,187	+		DZA65_RS16320	0.17	-0.2
3,538,188	-		DZA65_RS16320	0.17	-0.3
3,538,188	-		DZA65_RS16320	0.17	+1.0
3,538,193	-		DZA65_RS16320	0.18	-0.2
3,538,194	+		DZA65_RS16320	0.18	+1.2
3,538,195	-		DZA65_RS16320	0.18	+0.5
3,538,195	-		DZA65_RS16320	0.18	-0.7
3,538,195	-		DZA65_RS16320	0.18	-0.1
3,538,214	+		DZA65_RS16320	0.21	+0.7
3,538,214	+		DZA65_RS16320	0.21	+1.3
3,538,214	+		DZA65_RS16320	0.21	-3.3
3,538,215	-		DZA65_RS16320	0.21	-0.3
3,538,219	+		DZA65_RS16320	0.21	-1.7
3,538,220	-		DZA65_RS16320	0.22	-1.9
3,538,220	-		DZA65_RS16320	0.22	-1.7
3,538,220	-		DZA65_RS16320	0.22	+0.2
3,538,220	-		DZA65_RS16320	0.22	+0.8
3,538,220	-		DZA65_RS16320	0.22	-0.8
3,538,220	-		DZA65_RS16320	0.22	+0.9
3,538,220	-		DZA65_RS16320	0.22	+1.1
3,538,220	-		DZA65_RS16320	0.22	-0.7
3,538,226	+		DZA65_RS16320	0.22	+1.3
3,538,227	-		DZA65_RS16320	0.22	+1.1
3,538,230	+		DZA65_RS16320	0.23	-0.8
3,538,230	+		DZA65_RS16320	0.23	+0.3
3,538,231	-		DZA65_RS16320	0.23	-1.3
3,538,231	-		DZA65_RS16320	0.23	-0.2
3,538,232	+		DZA65_RS16320	0.23	-2.5
3,538,253	+		DZA65_RS16320	0.26	+1.4
3,538,253	+		DZA65_RS16320	0.26	+3.4
3,538,253	+		DZA65_RS16320	0.26	+0.4
3,538,253	+		DZA65_RS16320	0.26	+0.2
3,538,253	+		DZA65_RS16320	0.26	-0.3
3,538,253	+		DZA65_RS16320	0.26	-1.9
3,538,253	+		DZA65_RS16320	0.26	+0.1
3,538,253	+		DZA65_RS16320	0.26	-0.5
3,538,254	-		DZA65_RS16320	0.26	-0.7
3,538,254	-		DZA65_RS16320	0.26	+1.3
3,538,254	-		DZA65_RS16320	0.26	+0.5
3,538,254	-		DZA65_RS16320	0.26	+2.4
3,538,254	-		DZA65_RS16320	0.26	+0.7
3,538,254	-		DZA65_RS16320	0.26	+0.9
3,538,254	-		DZA65_RS16320	0.26	+0.7
3,538,254	-		DZA65_RS16320	0.26	-0.0
3,538,254	-		DZA65_RS16320	0.26	+1.8
3,538,254	-		DZA65_RS16320	0.26	+1.8
3,538,254	-		DZA65_RS16320	0.26	-0.2
3,538,254	-		DZA65_RS16320	0.26	+0.7
3,538,255	+		DZA65_RS16320	0.26	-1.1
3,538,255	+		DZA65_RS16320	0.26	-1.3
3,538,255	+		DZA65_RS16320	0.26	-0.6
3,538,255	+		DZA65_RS16320	0.26	-0.3
3,538,255	+		DZA65_RS16320	0.26	-1.8
3,538,256	-		DZA65_RS16320	0.26	-2.3
3,538,256	-		DZA65_RS16320	0.26	-0.3
3,538,256	-		DZA65_RS16320	0.26	-0.9
3,538,256	-		DZA65_RS16320	0.26	-0.1
3,538,256	-		DZA65_RS16320	0.26	-0.3
3,538,256	-		DZA65_RS16320	0.26	-1.3
3,538,256	-		DZA65_RS16320	0.26	+1.0
3,538,352	+		DZA65_RS16320	0.39	+0.7
3,538,353	-		DZA65_RS16320	0.39	-1.5
3,538,353	-		DZA65_RS16320	0.39	+0.5
3,538,353	-		DZA65_RS16320	0.39	-1.3
3,538,353	-		DZA65_RS16320	0.39	-0.7
3,538,358	+		DZA65_RS16320	0.39	-0.6
3,538,358	+		DZA65_RS16320	0.39	+0.5
3,538,358	+		DZA65_RS16320	0.39	+0.7
3,538,359	-		DZA65_RS16320	0.40	-0.2
3,538,359	-		DZA65_RS16320	0.40	-0.5
3,538,417	+		DZA65_RS16320	0.47	+0.2
3,538,417	+				+1.8
3,538,418	-		DZA65_RS16320	0.47	+0.7
3,538,418	-		DZA65_RS16320	0.47	-0.7
3,538,418	-		DZA65_RS16320	0.47	-1.5
3,538,418	-		DZA65_RS16320	0.47	+1.5
3,538,419	+		DZA65_RS16320	0.47	-0.7
3,538,425	+		DZA65_RS16320	0.48	-2.2
3,538,425	+		DZA65_RS16320	0.48	-0.1
3,538,503	-		DZA65_RS16320	0.58	+2.0
3,538,503	-		DZA65_RS16320	0.58	-1.9
3,538,549	+		DZA65_RS16320	0.64	+0.5
3,538,550	-		DZA65_RS16320	0.64	-0.3
3,538,583	+		DZA65_RS16320	0.68	+0.9
3,538,583	+		DZA65_RS16320	0.68	+0.7
3,538,583	+		DZA65_RS16320	0.68	+2.2
3,538,584	-		DZA65_RS16320	0.69	-0.3
3,538,584	-		DZA65_RS16320	0.69	-2.3
3,538,584	-		DZA65_RS16320	0.69	-0.3
3,538,587	-		DZA65_RS16320	0.69	+1.0
3,538,605	-		DZA65_RS16320	0.71	+2.1
3,538,633	+		DZA65_RS16320	0.75	+0.4
3,538,634	-		DZA65_RS16320	0.75	+0.1
3,538,634	-		DZA65_RS16320	0.75	+0.3
3,538,634	-		DZA65_RS16320	0.75	+0.0
3,538,634	-		DZA65_RS16320	0.75	+2.5
3,538,650	+		DZA65_RS16320	0.77	-0.3
3,538,664	+		DZA65_RS16320	0.79	+0.7
3,538,665	-		DZA65_RS16320	0.79	+1.0
3,538,695	+		DZA65_RS16320	0.83	+0.5
3,538,708	+		DZA65_RS16320	0.85	+1.2
3,538,722	-		DZA65_RS16320	0.86	-0.0
3,538,730	-		DZA65_RS16320	0.87	+0.1
3,538,740	+		DZA65_RS16320	0.89	+0.1
3,538,740	+		DZA65_RS16320	0.89	-0.3
3,538,740	+		DZA65_RS16320	0.89	+0.2
3,538,740	+		DZA65_RS16320	0.89	+1.2
3,538,740	+		DZA65_RS16320	0.89	-0.3
3,538,741	-		DZA65_RS16320	0.89	+2.1
3,538,758	-				+1.2
3,538,783	-				+0.4
3,538,817	+				+1.4
3,538,818	-				-1.5
3,538,821	-				+1.5
3,538,868	-				+0.7
3,538,871	+				+0.8
3,538,932	+				+0.4
3,538,948	+				+1.0
3,538,968	+				-0.3
3,538,969	-				+0.0
3,538,969	-				-1.9
3,538,985	+				-1.6
3,539,057	+		DZA65_RS16325	0.18	-0.6
3,539,073	+		DZA65_RS16325	0.22	+0.8
3,539,076	+		DZA65_RS16325	0.23	-0.4
3,539,076	+		DZA65_RS16325	0.23	-0.8
3,539,077	-		DZA65_RS16325	0.23	-1.7
3,539,078	+		DZA65_RS16325	0.24	+1.2
3,539,104	-		DZA65_RS16325	0.30	-0.0
3,539,104	-		DZA65_RS16325	0.30	+2.0
3,539,179	-		DZA65_RS16325	0.49	+0.1
3,539,179	-		DZA65_RS16325	0.49	+2.1
3,539,222	+		DZA65_RS16325	0.60	-0.7
3,539,314	-		DZA65_RS16325	0.83	-1.3
3,539,406	+				-1.3
3,539,406	+				-0.6
3,539,407	-				+0.2
3,539,494	-				-0.7
3,539,499	-				+1.9
3,539,537	+				+0.1
3,539,580	+				-0.1
3,539,696	+				+2.0
3,539,800	-				+0.7
3,539,998	+				-0.8
3,540,010	+				+1.5
3,540,011	-				-0.2
3,540,029	+				-0.1
3,540,029	+				-0.9
3,540,029	+				-1.3
3,540,029	+				+0.7
3,540,029	+				-1.9
3,540,030	-				+0.4
3,540,030	-				-1.7
3,540,030	-				-1.9
3,540,030	-				-1.0
3,540,032	-				-1.1
3,540,040	+				+0.7
3,540,040	+				-0.3
3,540,041	-				+0.8
3,540,065	+				+0.8
3,540,083	+				+0.8
3,540,083	+				-2.7
3,540,083	+				-1.3
3,540,083	+				-0.8
3,540,152	+				+1.4
3,540,160	-				-0.5
3,540,211	-				-0.6
3,540,229	+				+1.8
3,540,229	+				+0.7
3,540,230	-				+1.0
3,540,230	-				+0.3
3,540,230	-				-0.5
3,540,230	-				-1.3
3,540,230	-				-0.6
3,540,237	+				-0.3
3,540,237	+				-0.3
3,540,237	+				+0.3
3,540,237	+				+1.0
3,540,237	+				+1.3
3,540,237	+				-0.9
3,540,237	+				+0.1
3,540,238	-				-0.3
3,540,238	-				+0.5
3,540,238	-				+0.0
3,540,238	-				-1.9
3,540,238	-				+0.9
3,540,241	-				-1.2
3,540,241	-				-0.2
3,540,261	+		DZA65_RS16330	0.10	-0.1
3,540,278	-		DZA65_RS16330	0.12	-0.2
3,540,332	-		DZA65_RS16330	0.17	+0.8
3,540,332	-		DZA65_RS16330	0.17	-1.7
3,540,339	+		DZA65_RS16330	0.18	-0.5
3,540,339	+		DZA65_RS16330	0.18	-0.9
3,540,352	+		DZA65_RS16330	0.19	-0.9
3,540,352	+		DZA65_RS16330	0.19	+0.2
3,540,353	-		DZA65_RS16330	0.19	-1.3
3,540,353	-		DZA65_RS16330	0.19	-0.3
3,540,353	-		DZA65_RS16330	0.19	-0.9
3,540,353	-		DZA65_RS16330	0.19	+1.9
3,540,353	-		DZA65_RS16330	0.19	-0.2
3,540,356	+		DZA65_RS16330	0.19	+1.4
3,540,357	-		DZA65_RS16330	0.20	-1.3