Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS15500

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,357,881	-		DZA65_RS15485	0.79	-1.1
3,357,881	-		DZA65_RS15485	0.79	-2.8
3,357,881	-		DZA65_RS15485	0.79	-1.4
3,357,881	-		DZA65_RS15485	0.79	+2.0
3,357,881	-		DZA65_RS15485	0.79	-0.6
3,357,910	-		DZA65_RS15485	0.80	-0.1
3,357,924	+		DZA65_RS15485	0.81	-0.4
3,358,192	+				+1.6
3,358,192	+				-2.0
3,358,192	+				+1.4
3,358,192	+				+0.3
3,358,192	+				-0.4
3,358,192	+				+1.1
3,358,192	+				-0.4
3,358,192	+				-3.0
3,358,193	-				+2.1
3,358,221	+				+0.7
3,358,252	-				+0.4
3,358,264	-				-1.0
3,358,266	+				+1.1
3,358,462	+		DZA65_RS15495	0.21	-1.7
3,358,462	+		DZA65_RS15495	0.21	-0.4
3,358,462	+		DZA65_RS15495	0.21	-1.2
3,358,463	-		DZA65_RS15495	0.21	-1.7
3,358,491	+		DZA65_RS15495	0.36	-0.4
3,358,491	+		DZA65_RS15495	0.36	-1.7
3,358,491	+		DZA65_RS15495	0.36	+1.0
3,358,491	+		DZA65_RS15495	0.36	+0.6
3,358,492	-		DZA65_RS15495	0.37	+1.0
3,358,492	-		DZA65_RS15495	0.37	+1.0
3,358,494	+		DZA65_RS15495	0.38	-1.4
3,358,495	-		DZA65_RS15495	0.38	-0.4
3,358,495	-				+0.6
3,358,495	-		DZA65_RS15495	0.38	-0.8
3,358,502	+		DZA65_RS15495	0.42	-0.8
3,358,503	-		DZA65_RS15495	0.42	+0.6
3,358,503	-		DZA65_RS15495	0.42	+0.1
3,358,534	+		DZA65_RS15495	0.59	+0.8
3,358,612	-				+1.2
3,358,663	+				-0.5
3,358,676	-				+0.6
3,358,676	-				-0.4
3,358,676	-				+0.1
3,358,680	+				-2.8
3,358,821	-				-0.1
3,358,821	-				+4.2
3,358,821	-				+1.0
3,358,821	-				+1.8
3,358,823	+				-1.1
3,358,854	+				+0.1
3,358,855	-				+0.8
3,358,855	-				+3.2
3,358,855	-				+2.2
3,358,855	-				+0.9
3,358,855	-				+0.8
3,358,855	-				+0.1
3,358,855	-				-2.2
3,358,865	-				-0.4
3,358,882	+				-0.7
3,358,925	+		DZA65_RS15500	0.15	-0.1
3,358,925	+		DZA65_RS15500	0.15	-1.0
3,358,925	+		DZA65_RS15500	0.15	+0.4
3,358,926	-		DZA65_RS15500	0.15	-0.4
3,359,054	+		DZA65_RS15500	0.58	-0.8
3,359,064	-		DZA65_RS15500	0.62	-0.3
3,359,077	+		DZA65_RS15500	0.66	-1.2
3,359,078	-		DZA65_RS15500	0.66	-0.4
3,359,078	-		DZA65_RS15500	0.66	+1.2
3,359,078	-		DZA65_RS15500	0.66	-0.8
3,359,099	+		DZA65_RS15500	0.73	-0.6
3,359,107	-		DZA65_RS15500	0.76	+2.4
3,359,115	+		DZA65_RS15500	0.79	+0.1
3,359,115	+		DZA65_RS15500	0.79	+0.6
3,359,115	+		DZA65_RS15500	0.79	-1.0
3,359,115	+		DZA65_RS15500	0.79	-0.4
3,359,116	-		DZA65_RS15500	0.79	-0.4
3,359,116	-		DZA65_RS15500	0.79	+1.0
3,359,116	-		DZA65_RS15500	0.79	-0.4
3,359,116	-		DZA65_RS15500	0.79	-0.8
3,359,116	-		DZA65_RS15500	0.79	+0.9
3,359,116	-		DZA65_RS15500	0.79	+0.6
3,359,116	-		DZA65_RS15500	0.79	-1.0
3,359,116	-		DZA65_RS15500	0.79	-0.4
3,359,154	-				+0.9
3,359,234	+				-1.4
3,359,234	+				-1.0
3,359,250	+				-0.1
3,359,250	+				+1.2
3,359,250	+				-1.8
3,359,251	-				+1.3
3,359,268	-				-0.6
3,359,273	+				+0.4
3,359,274	-				+1.2
3,359,274	-				+0.5
3,359,298	+				+0.9
3,359,299	-				+0.1
3,359,349	+				+0.3
3,359,359	-				-0.1
3,359,450	+				-0.4
3,359,450	+				+0.0
3,359,451	-				-0.8
3,359,453	-				-1.8
3,359,485	+				+1.0
3,359,485	+				+1.9
3,359,486	-				+0.6
3,359,495	+				+0.4
3,359,495	+				+1.0
3,359,495	+				-1.0
3,359,496	-				+0.6
3,359,496	-				+0.9
3,359,514	+				+0.3
3,359,515	-				+1.0
3,359,522	+				+0.8
3,359,523	-				+0.2
3,359,577	+				-0.7
3,359,611	-				+1.0
3,359,748	+		DZA65_RS15505	0.15	+0.2
3,359,748	+		DZA65_RS15505	0.15	-0.1
3,359,749	-		DZA65_RS15505	0.15	+1.2
3,359,749	-		DZA65_RS15505	0.15	+0.6
3,359,749	-		DZA65_RS15505	0.15	+1.6
3,359,783	+		DZA65_RS15505	0.18	+2.1
3,359,783	+		DZA65_RS15505	0.18	+0.2
3,359,783	+		DZA65_RS15505	0.18	-1.2
3,359,783	+		DZA65_RS15505	0.18	+0.6
3,359,783	+		DZA65_RS15505	0.18	+1.2
3,359,783	+		DZA65_RS15505	0.18	+0.5
3,359,783	+		DZA65_RS15505	0.18	-1.7
3,359,784	-		DZA65_RS15505	0.18	+1.2
3,359,784	-		DZA65_RS15505	0.18	-0.4
3,359,784	-		DZA65_RS15505	0.18	+0.1
3,359,784	-		DZA65_RS15505	0.18	+1.5
3,359,784	-		DZA65_RS15505	0.18	+0.9
3,359,784	-		DZA65_RS15505	0.18	+0.8
3,359,784	-		DZA65_RS15505	0.18	+0.0
3,359,784	-		DZA65_RS15505	0.18	+0.1
3,359,784	-		DZA65_RS15505	0.18	+0.0
3,359,784	-		DZA65_RS15505	0.18	-0.3
3,359,784	-		DZA65_RS15505	0.18	-1.0
3,359,784	-		DZA65_RS15505	0.18	-2.2
3,359,784	-		DZA65_RS15505	0.18	+0.3
3,359,784	-		DZA65_RS15505	0.18	-0.4
3,359,784	-		DZA65_RS15505	0.18	+2.5
3,359,784	-		DZA65_RS15505	0.18	-2.0
3,359,788	+		DZA65_RS15505	0.18	+0.6
3,359,788	+		DZA65_RS15505	0.18	-2.2
3,359,789	-		DZA65_RS15505	0.18	-1.0
3,359,848	+		DZA65_RS15505	0.23	-0.8
3,359,848	+		DZA65_RS15505	0.23	-0.4
3,359,848	+		DZA65_RS15505	0.23	+0.6
3,359,848	+		DZA65_RS15505	0.23	-2.7
3,359,848	+		DZA65_RS15505	0.23	+0.9
3,359,849	-		DZA65_RS15505	0.23	-0.4
3,359,849	-		DZA65_RS15505	0.23	-2.2
3,359,849	-		DZA65_RS15505	0.23	+2.4
3,359,849	-		DZA65_RS15505	0.23	-1.7
3,359,849	-		DZA65_RS15505	0.23	+0.5
3,359,913	+		DZA65_RS15505	0.28	+0.3
3,359,913	+		DZA65_RS15505	0.28	+2.1
3,360,033	-		DZA65_RS15505	0.38	+0.6
3,360,080	+		DZA65_RS15505	0.42	-0.1
3,360,080	+		DZA65_RS15505	0.42	+1.6
3,360,080	+		DZA65_RS15505	0.42	+1.4
3,360,080	+		DZA65_RS15505	0.42	+1.8
3,360,080	+		DZA65_RS15505	0.42	-0.1
3,360,080	+		DZA65_RS15505	0.42	-0.4
3,360,081	-		DZA65_RS15505	0.42	-1.5
3,360,160	+		DZA65_RS15505	0.48	-0.4
3,360,161	-		DZA65_RS15505	0.48	+2.0
3,360,161	-		DZA65_RS15505	0.48	+3.0
3,360,161	-		DZA65_RS15505	0.48	-0.2