Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14610

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,178,994	+		DZA65_RS14605	0.39	-0.4
3,178,995	-		DZA65_RS14605	0.39	-0.3
3,178,995	-		DZA65_RS14605	0.39	-0.0
3,178,995	-		DZA65_RS14605	0.39	-1.0
3,178,995	-		DZA65_RS14605	0.39	-1.4
3,178,995	-		DZA65_RS14605	0.39	-0.4
3,178,999	+		DZA65_RS14605	0.39	-1.1
3,179,000	-		DZA65_RS14605	0.39	-0.7
3,179,027	+		DZA65_RS14605	0.41	-1.3
3,179,027	+		DZA65_RS14605	0.41	+0.1
3,179,028	-		DZA65_RS14605	0.41	-2.0
3,179,028	-		DZA65_RS14605	0.41	-0.7
3,179,028	-		DZA65_RS14605	0.41	-0.4
3,179,043	+		DZA65_RS14605	0.43	-1.4
3,179,058	+		DZA65_RS14605	0.44	-0.5
3,179,058	+		DZA65_RS14605	0.44	+1.2
3,179,059	-		DZA65_RS14605	0.44	-0.1
3,179,059	-		DZA65_RS14605	0.44	-1.0
3,179,059	-		DZA65_RS14605	0.44	-0.7
3,179,065	-		DZA65_RS14605	0.44	+0.0
3,179,065	-		DZA65_RS14605	0.44	-1.7
3,179,065	-		DZA65_RS14605	0.44	+0.2
3,179,065	-		DZA65_RS14605	0.44	-0.4
3,179,065	-		DZA65_RS14605	0.44	-0.6
3,179,065	-		DZA65_RS14605	0.44	+0.8
3,179,089	+		DZA65_RS14605	0.46	+0.7
3,179,090	-		DZA65_RS14605	0.47	+0.7
3,179,090	-		DZA65_RS14605	0.47	+0.6
3,179,090	-		DZA65_RS14605	0.47	-1.3
3,179,090	-		DZA65_RS14605	0.47	-2.2
3,179,133	+		DZA65_RS14605	0.50	-2.6
3,179,133	+		DZA65_RS14605	0.50	-0.1
3,179,134	-				+2.2
3,179,134	-		DZA65_RS14605	0.50	+1.6
3,179,146	-		DZA65_RS14605	0.51	-1.6
3,179,167	-		DZA65_RS14605	0.53	+0.4
3,179,178	+		DZA65_RS14605	0.54	+2.0
3,179,178	+		DZA65_RS14605	0.54	-1.3
3,179,179	-		DZA65_RS14605	0.54	-1.1
3,179,191	-		DZA65_RS14605	0.55	+1.3
3,179,231	-		DZA65_RS14605	0.58	+1.4
3,179,241	+		DZA65_RS14605	0.59	-1.4
3,179,252	-		DZA65_RS14605	0.60	+3.2
3,179,252	-		DZA65_RS14605	0.60	+0.2
3,179,256	-		DZA65_RS14605	0.60	+0.6
3,179,256	-		DZA65_RS14605	0.60	-0.2
3,179,271	+		DZA65_RS14605	0.62	+1.2
3,179,273	+		DZA65_RS14605	0.62	-0.2
3,179,287	+		DZA65_RS14605	0.63	-1.0
3,179,306	-		DZA65_RS14605	0.65	-1.0
3,179,362	-		DZA65_RS14605	0.69	+1.0
3,179,364	+		DZA65_RS14605	0.70	-0.0
3,179,364	+		DZA65_RS14605	0.70	+0.8
3,179,364	+		DZA65_RS14605	0.70	+1.7
3,179,369	-		DZA65_RS14605	0.70	-0.3
3,179,403	+		DZA65_RS14605	0.73	+0.6
3,179,403	+		DZA65_RS14605	0.73	+0.5
3,179,407	-		DZA65_RS14605	0.73	-0.2
3,179,439	+		DZA65_RS14605	0.76	-3.2
3,179,458	-		DZA65_RS14605	0.77	-0.0
3,179,458	-		DZA65_RS14605	0.77	-2.7
3,179,461	+		DZA65_RS14605	0.78	-0.6
3,179,461	+		DZA65_RS14605	0.78	+0.7
3,179,462	-		DZA65_RS14605	0.78	-0.1
3,179,462	-		DZA65_RS14605	0.78	-2.0
3,179,462	-		DZA65_RS14605	0.78	-1.6
3,179,462	-		DZA65_RS14605	0.78	-0.8
3,179,462	-		DZA65_RS14605	0.78	-1.4
3,179,462	-		DZA65_RS14605	0.78	+0.2
3,179,489	-		DZA65_RS14605	0.80	-1.0
3,179,489	-		DZA65_RS14605	0.80	+0.1
3,179,489	-		DZA65_RS14605	0.80	-0.6
3,179,491	+		DZA65_RS14605	0.80	-1.0
3,179,525	+		DZA65_RS14605	0.83	+0.2
3,179,538	+		DZA65_RS14605	0.84	-2.2
3,179,538	+		DZA65_RS14605	0.84	+0.7
3,179,538	+		DZA65_RS14605	0.84	-0.2
3,179,538	+		DZA65_RS14605	0.84	+0.2
3,179,538	+		DZA65_RS14605	0.84	+2.3
3,179,538	+		DZA65_RS14605	0.84	+0.1
3,179,538	+		DZA65_RS14605	0.84	+0.6
3,179,539	-		DZA65_RS14605	0.84	-0.4
3,179,540	+		DZA65_RS14605	0.84	+0.2
3,179,540	+				+0.3
3,179,540	+		DZA65_RS14605	0.84	-0.4
3,179,540	+		DZA65_RS14605	0.84	-0.4
3,179,614	+				+0.1
3,179,614	+				+0.6
3,179,614	+				+0.2
3,179,645	+				+0.3
3,179,645	+				-0.4
3,179,646	-				+0.0
3,179,646	-				+1.3
3,179,647	+				+1.3
3,179,647	+				-0.3
3,179,647	+				-2.4
3,179,647	+				+1.5
3,179,647	+				-1.9
3,179,647	+				-0.6
3,179,648	-				+1.9
3,179,648	-				+1.3
3,179,648	-				+0.7
3,179,648	-				-1.4
3,179,648	-				-0.4
3,179,657	+				-1.0
3,179,657	+				+0.0
3,179,657	+				+1.2
3,179,657	+				-0.1
3,179,657	+				+0.8
3,179,657	+				-2.0
3,179,657	+				-0.4
3,179,657	+				+1.9
3,179,657	+				+0.0
3,179,658	-				-0.4
3,179,658	-				-0.5
3,179,658	-				+0.2
3,179,658	-				-0.5
3,179,658	-				-0.7
3,179,658	-				+1.4
3,179,660	-				-1.7
3,179,660	-				+1.2
3,179,660	-				+0.5
3,179,660	-				-0.7
3,179,749	-				+0.0
3,179,749	-				+0.2
3,179,757	+				-1.0
3,179,757	+				-0.7
3,179,757	+				-0.4
3,179,757	+				-0.1
3,179,757	+				-0.5
3,179,758	-				-0.4
3,179,758	-				+1.8
3,179,758	-				-1.2
3,179,758	-				-1.0
3,179,760	+				-0.4
3,179,760	+				-2.0
3,179,760	+				-0.8
3,179,760	+				-0.9
3,179,761	-				-0.9
3,179,761	-				-1.2
3,179,761	-				+0.5
3,179,761	-				+0.4
3,179,761	-				+0.1
3,179,761	-				-0.0
3,179,761	-				+1.1
3,179,763	+				-0.5
3,179,763	+				-0.3
3,179,764	-				-1.7
3,179,764	-				+0.3
3,179,764	-				+0.8
3,179,764	-				-0.2
3,179,786	+				-1.0
3,179,786	+				+1.9
3,179,787	-				-2.9
3,179,885	+				+0.3
3,179,907	+				+0.2
3,179,907	+				-0.1
3,179,911	+				+0.9
3,179,911	+				+0.2
3,179,917	+				+1.3
3,179,917	+				+1.9
3,179,917	+				-0.2
3,179,917	+				-0.2
3,179,918	-				-0.2
3,179,918	-				+0.6
3,179,918	-				+1.3
3,179,955	+				-2.7
3,179,956	-				-1.4
3,179,956	-				+0.3
3,179,979	-				+2.1
3,180,024	+		DZA65_RS14610	0.10	+0.6
3,180,024	+		DZA65_RS14610	0.10	+0.3
3,180,024	+		DZA65_RS14610	0.10	-0.4
3,180,024	+		DZA65_RS14610	0.10	-0.4
3,180,024	+		DZA65_RS14610	0.10	-2.5
3,180,024	+		DZA65_RS14610	0.10	+0.6
3,180,024	+		DZA65_RS14610	0.10	+3.1
3,180,025	-		DZA65_RS14610	0.10	+1.3
3,180,025	-		DZA65_RS14610	0.10	-1.4
3,180,026	+		DZA65_RS14610	0.11	-0.4
3,180,027	-		DZA65_RS14610	0.11	-1.4
3,180,027	-		DZA65_RS14610	0.11	-0.4
3,180,027	-		DZA65_RS14610	0.11	+1.1
3,180,027	-		DZA65_RS14610	0.11	-2.2
3,180,029	-		DZA65_RS14610	0.11	+0.6
3,180,029	-		DZA65_RS14610	0.11	-2.4
3,180,029	-		DZA65_RS14610	0.11	-0.8
3,180,075	+		DZA65_RS14610	0.16	-1.7
3,180,076	-		DZA65_RS14610	0.16	-0.0
3,180,076	-		DZA65_RS14610	0.16	+0.8
3,180,076	-		DZA65_RS14610	0.16	+0.2
3,180,076	-		DZA65_RS14610	0.16	-1.2
3,180,076	-		DZA65_RS14610	0.16	-1.3
3,180,076	-		DZA65_RS14610	0.16	+0.1
3,180,090	-		DZA65_RS14610	0.18	-0.4
3,180,090	-		DZA65_RS14610	0.18	-0.2
3,180,090	-		DZA65_RS14610	0.18	+0.6
3,180,201	+		DZA65_RS14610	0.30	-0.3
3,180,201	+		DZA65_RS14610	0.30	-1.6
3,180,202	-				+1.9
3,180,202	-		DZA65_RS14610	0.30	+0.1
3,180,202	-		DZA65_RS14610	0.30	-1.4
3,180,202	-		DZA65_RS14610	0.30	+1.8
3,180,202	-		DZA65_RS14610	0.30	-2.4
3,180,202	-		DZA65_RS14610	0.30	-2.7
3,180,202	-		DZA65_RS14610	0.30	-0.7
3,180,202	-		DZA65_RS14610	0.30	-1.0
3,180,257	+		DZA65_RS14610	0.36	-0.4
3,180,310	+		DZA65_RS14610	0.42	-0.4
3,180,310	+		DZA65_RS14610	0.42	-0.5
3,180,322	+		DZA65_RS14610	0.43	+1.3
3,180,323	-		DZA65_RS14610	0.43	-2.2
3,180,341	+		DZA65_RS14610	0.45	-0.1
3,180,341	+		DZA65_RS14610	0.45	+1.9
3,180,393	+		DZA65_RS14610	0.51	-0.8
3,180,394	-		DZA65_RS14610	0.51	+1.2
3,180,394	-		DZA65_RS14610	0.51	-0.7
3,180,394	-		DZA65_RS14610	0.51	-1.3
3,180,394	-		DZA65_RS14610	0.51	+0.5
3,180,394	-		DZA65_RS14610	0.51	+0.6
3,180,403	+		DZA65_RS14610	0.52	+1.6
3,180,403	+		DZA65_RS14610	0.52	+1.0
3,180,403	+		DZA65_RS14610	0.52	-0.6
3,180,403	+		DZA65_RS14610	0.52	-0.4
3,180,403	+		DZA65_RS14610	0.52	-2.2
3,180,403	+		DZA65_RS14610	0.52	-0.2
3,180,403	+		DZA65_RS14610	0.52	-0.1
3,180,403	+		DZA65_RS14610	0.52	+0.8
3,180,403	+		DZA65_RS14610	0.52	+1.8
3,180,403	+		DZA65_RS14610	0.52	-2.3
3,180,404	-		DZA65_RS14610	0.52	-0.6
3,180,404	-		DZA65_RS14610	0.52	+0.8
3,180,404	-		DZA65_RS14610	0.52	+1.0
3,180,404	-		DZA65_RS14610	0.52	-2.0
3,180,404	-		DZA65_RS14610	0.52	+0.3
3,180,443	-		DZA65_RS14610	0.57	+1.6
3,180,461	+		DZA65_RS14610	0.59	+0.6
3,180,491	+		DZA65_RS14610	0.62	+1.5
3,180,491	+		DZA65_RS14610	0.62	+0.4
3,180,515	+		DZA65_RS14610	0.65	+1.2
3,180,516	-		DZA65_RS14610	0.65	+1.9
3,180,516	-		DZA65_RS14610	0.65	+0.0
3,180,516	-		DZA65_RS14610	0.65	-1.6
3,180,516	-		DZA65_RS14610	0.65	+0.1
3,180,516	-		DZA65_RS14610	0.65	-0.0
3,180,516	-		DZA65_RS14610	0.65	+2.4
3,180,566	+		DZA65_RS14610	0.70	-0.4
3,180,578	+		DZA65_RS14610	0.72	+0.7
3,180,578	+		DZA65_RS14610	0.72	-1.0
3,180,578	+		DZA65_RS14610	0.72	-1.2
3,180,578	+		DZA65_RS14610	0.72	-0.3
3,180,578	+		DZA65_RS14610	0.72	+0.8
3,180,578	+		DZA65_RS14610	0.72	-0.1
3,180,579	-		DZA65_RS14610	0.72	+0.6
3,180,579	-		DZA65_RS14610	0.72	-0.4
3,180,632	+		DZA65_RS14610	0.78	+0.6
3,180,632	+		DZA65_RS14610	0.78	-2.9
3,180,633	-		DZA65_RS14610	0.78	-2.0
3,180,633	-		DZA65_RS14610	0.78	+1.3
3,180,633	-		DZA65_RS14610	0.78	+0.6
3,180,635	+		DZA65_RS14610	0.78	+0.2
3,180,636	-		DZA65_RS14610	0.78	-1.2
3,180,636	-		DZA65_RS14610	0.78	+1.2
3,180,636	-		DZA65_RS14610	0.78	-1.5
3,180,636	-		DZA65_RS14610	0.78	-2.4
3,180,636	-		DZA65_RS14610	0.78	+0.9
3,180,696	+		DZA65_RS14610	0.85	+1.6
3,180,697	-		DZA65_RS14610	0.85	-0.4
3,180,732	-		DZA65_RS14610	0.89	+0.7
3,180,732	-		DZA65_RS14610	0.89	-1.7
3,180,793	+				-1.2
3,180,793	+				-1.0
3,180,793	+				-2.2
3,180,793	+				+0.3
3,180,793	+				+0.4
3,180,794	-				-0.4
3,180,794	-				-1.0
3,180,821	+				-0.9
3,180,823	+				+0.1
3,180,823	+				+0.9
3,180,824	-				-1.4
3,180,824	-				+1.0
3,180,824	-				-1.2
3,180,824	-				-0.2
3,180,824	-				+0.4
3,180,824	-				+1.8
3,180,827	+				-2.4
3,180,850	+				+1.2
3,180,850	+				-0.4
3,180,851	-				-0.9
3,180,851	-				-2.0
3,180,864	+				+2.0
3,180,865	-				+1.8
3,180,865	-				-0.1
3,180,865	-				-3.7
3,180,893	-		DZA65_RS14615	0.12	-1.4
3,180,893	-		DZA65_RS14615	0.12	+1.4
3,180,895	+		DZA65_RS14615	0.12	-0.4
3,180,947	+		DZA65_RS14615	0.22	-0.0
3,180,948	-		DZA65_RS14615	0.22	-0.8
3,180,948	-		DZA65_RS14615	0.22	+1.5
3,180,987	+		DZA65_RS14615	0.29	-1.0
3,181,009	-		DZA65_RS14615	0.33	-0.0
3,181,009	-		DZA65_RS14615	0.33	+0.6
3,181,016	-		DZA65_RS14615	0.34	-1.7
3,181,095	+		DZA65_RS14615	0.48	-2.9
3,181,096	-				+2.6
3,181,096	-		DZA65_RS14615	0.48	-0.7
3,181,096	-		DZA65_RS14615	0.48	-2.0
3,181,103	-		DZA65_RS14615	0.50	-3.1
3,181,103	-		DZA65_RS14615	0.50	+0.4
3,181,103	-		DZA65_RS14615	0.50	-0.6
3,181,103	-		DZA65_RS14615	0.50	-1.7
3,181,149	+		DZA65_RS14615	0.58	-1.0
3,181,178	-		DZA65_RS14615	0.63	-1.3
3,181,178	-		DZA65_RS14615	0.63	+0.6
3,181,186	+		DZA65_RS14615	0.65	+0.2
3,181,186	+		DZA65_RS14615	0.65	-1.0
3,181,187	-		DZA65_RS14615	0.65	-0.4
3,181,187	-		DZA65_RS14615	0.65	-1.4
3,181,187	-		DZA65_RS14615	0.65	+0.9
3,181,194	+		DZA65_RS14615	0.66	+0.2
3,181,204	-		DZA65_RS14615	0.68	-0.4
3,181,204	-		DZA65_RS14615	0.68	+0.3
3,181,261	-		DZA65_RS14615	0.78	-0.5
3,181,261	-		DZA65_RS14615	0.78	-1.6
3,181,281	+		DZA65_RS14615	0.82	+1.3
3,181,357	+				+0.8
3,181,358	-				-0.6
3,181,376	-				-1.4
3,181,384	-				+1.2
3,181,386	+				-0.7
3,181,386	+				-0.7
3,181,386	+				+0.6
3,181,387	-				+0.2
3,181,387	-				+0.1
3,181,387	-				-3.6
3,181,387	-				+0.5
3,181,387	-				+1.3
3,181,387	-				+1.8
3,181,387	-				-0.4
3,181,407	-				+0.2
3,181,407	-				-1.1
3,181,407	-				+0.3
3,181,407	-				+0.3
3,181,415	+				-0.7
3,181,416	-				-0.4
3,181,416	-				-0.6
3,181,419	-				-0.1
3,181,419	-				-0.7
3,181,430	+				-2.1
3,181,431	-				-1.9
3,181,431	-				+0.9
3,181,434	+				-1.0
3,181,434	+				+0.4
3,181,435	-				+0.5
3,181,487	+				-1.7
3,181,488	-				-0.6
3,181,488	-				+0.7
3,181,519	-				+0.1
3,181,519	-				-0.9
3,181,587	+				+1.6
3,181,588	-				+1.6
3,181,680	+		DZA65_RS14620	0.24	-0.7
3,181,680	+		DZA65_RS14620	0.24	-0.6
3,181,680	+		DZA65_RS14620	0.24	-0.1
3,181,680	+		DZA65_RS14620	0.24	-1.0
3,181,681	-		DZA65_RS14620	0.24	-0.2
3,181,681	-		DZA65_RS14620	0.24	+1.1
3,181,681	-		DZA65_RS14620	0.24	+1.6
3,181,681	-		DZA65_RS14620	0.24	+2.0
3,181,681	-		DZA65_RS14620	0.24	+1.2
3,181,695	+		DZA65_RS14620	0.27	-0.4
3,181,696	-		DZA65_RS14620	0.27	-0.8
3,181,754	+		DZA65_RS14620	0.38	+0.3
3,181,754	+				-0.4
3,181,754	+		DZA65_RS14620	0.38	-3.4
3,181,755	-		DZA65_RS14620	0.38	-0.0
3,181,774	+		DZA65_RS14620	0.42	-2.4
3,181,774	+		DZA65_RS14620	0.42	-0.2
3,181,774	+		DZA65_RS14620	0.42	+0.6
3,181,775	-		DZA65_RS14620	0.42	+1.9
3,181,784	+		DZA65_RS14620	0.44	-0.0
3,181,785	-		DZA65_RS14620	0.44	+0.5
3,181,785	-		DZA65_RS14620	0.44	-1.4
3,181,815	+		DZA65_RS14620	0.50	-1.2
3,181,815	+		DZA65_RS14620	0.50	-2.4
3,181,816	-		DZA65_RS14620	0.50	-1.7