Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14415

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,142,491	-		DZA65_RS14405	0.30	-1.0
3,142,496	+		DZA65_RS14405	0.31	-1.7
3,142,496	+		DZA65_RS14405	0.31	-0.2
3,142,496	+		DZA65_RS14405	0.31	-1.4
3,142,496	+		DZA65_RS14405	0.31	-0.3
3,142,497	-		DZA65_RS14405	0.31	-0.2
3,142,498	+		DZA65_RS14405	0.31	-1.4
3,142,498	+		DZA65_RS14405	0.31	-1.0
3,142,498	+		DZA65_RS14405	0.31	-0.1
3,142,498	+		DZA65_RS14405	0.31	-0.5
3,142,498	+		DZA65_RS14405	0.31	+2.2
3,142,498	+		DZA65_RS14405	0.31	+1.2
3,142,510	+		DZA65_RS14405	0.33	-1.6
3,142,522	+		DZA65_RS14405	0.35	+1.9
3,142,566	-		DZA65_RS14405	0.41	+1.7
3,142,586	+		DZA65_RS14405	0.44	-0.3
3,142,588	+		DZA65_RS14405	0.45	+0.2
3,142,588	+		DZA65_RS14405	0.45	+0.1
3,142,588	+		DZA65_RS14405	0.45	+0.2
3,142,588	+		DZA65_RS14405	0.45	+1.4
3,142,588	+		DZA65_RS14405	0.45	+0.8
3,142,588	+				+0.6
3,142,589	-		DZA65_RS14405	0.45	+0.9
3,142,589	-		DZA65_RS14405	0.45	+0.0
3,142,592	+		DZA65_RS14405	0.45	-1.4
3,142,593	-		DZA65_RS14405	0.45	+1.4
3,142,614	-		DZA65_RS14405	0.48	-1.7
3,142,629	+		DZA65_RS14405	0.51	-0.3
3,142,637	-		DZA65_RS14405	0.52	+1.2
3,142,658	+		DZA65_RS14405	0.55	-2.2
3,142,658	+		DZA65_RS14405	0.55	+1.2
3,142,658	+		DZA65_RS14405	0.55	+0.3
3,142,658	+		DZA65_RS14405	0.55	-2.4
3,142,659	-		DZA65_RS14405	0.55	+0.4
3,142,715	+		DZA65_RS14405	0.63	+1.3
3,142,715	+		DZA65_RS14405	0.63	-1.7
3,142,716	-		DZA65_RS14405	0.63	-0.8
3,142,716	-		DZA65_RS14405	0.63	-0.4
3,142,726	+		DZA65_RS14405	0.65	-2.6
3,142,736	-		DZA65_RS14405	0.66	+2.3
3,142,785	+		DZA65_RS14405	0.73	-0.4
3,142,785	+		DZA65_RS14405	0.73	+0.6
3,142,786	-		DZA65_RS14405	0.74	+0.7
3,142,786	-		DZA65_RS14405	0.74	+0.3
3,142,789	+		DZA65_RS14405	0.74	+2.3
3,142,790	-		DZA65_RS14405	0.74	-1.4
3,142,790	-		DZA65_RS14405	0.74	+0.2
3,142,790	-		DZA65_RS14405	0.74	-0.2
3,142,792	+		DZA65_RS14405	0.74	+0.2
3,142,828	+		DZA65_RS14405	0.80	+0.3
3,142,860	-		DZA65_RS14405	0.84	+3.6
3,142,860	-		DZA65_RS14405	0.84	-0.7
3,142,865	+		DZA65_RS14405	0.85	+0.8
3,142,934	+				-0.6
3,142,934	+				+0.1
3,142,934	+				-0.7
3,142,934	+				-0.1
3,142,935	-				+1.1
3,142,935	-				+1.6
3,142,989	-				+0.9
3,143,013	-		DZA65_RS14410	0.11	-0.1
3,143,047	+		DZA65_RS14410	0.19	+0.4
3,143,047	+		DZA65_RS14410	0.19	-1.0
3,143,047	+		DZA65_RS14410	0.19	+0.6
3,143,047	+		DZA65_RS14410	0.19	+0.0
3,143,047	+		DZA65_RS14410	0.19	-0.4
3,143,048	-		DZA65_RS14410	0.20	+0.7
3,143,048	-		DZA65_RS14410	0.20	-1.6
3,143,048	-		DZA65_RS14410	0.20	-1.2
3,143,074	+		DZA65_RS14410	0.26	+0.8
3,143,074	+		DZA65_RS14410	0.26	-0.5
3,143,074	+		DZA65_RS14410	0.26	+0.9
3,143,074	+		DZA65_RS14410	0.26	+2.6
3,143,074	+		DZA65_RS14410	0.26	-1.4
3,143,074	+		DZA65_RS14410	0.26	-0.0
3,143,074	+		DZA65_RS14410	0.26	-1.4
3,143,075	-		DZA65_RS14410	0.26	+1.0
3,143,075	-		DZA65_RS14410	0.26	-1.4
3,143,075	-		DZA65_RS14410	0.26	-0.2
3,143,075	-		DZA65_RS14410	0.26	-0.4
3,143,076	+		DZA65_RS14410	0.26	-1.7
3,143,076	+		DZA65_RS14410	0.26	-0.4
3,143,077	-		DZA65_RS14410	0.26	-0.4
3,143,232	+		DZA65_RS14410	0.63	+0.4
3,143,274	+		DZA65_RS14410	0.73	-0.2
3,143,274	+		DZA65_RS14410	0.73	+0.4
3,143,275	-		DZA65_RS14410	0.74	+0.1
3,143,324	+		DZA65_RS14410	0.85	+1.6
3,143,325	-		DZA65_RS14410	0.85	-0.4
3,143,325	-		DZA65_RS14410	0.85	+2.0
3,143,342	-		DZA65_RS14410	0.90	-1.7
3,143,360	+				-1.7
3,143,361	-				-0.8
3,143,361	-				+0.9
3,143,361	-				+2.2
3,143,387	-				+2.6
3,143,387	-				+0.3
3,143,401	-				-2.2
3,143,640	-		DZA65_RS14415	0.13	-0.8
3,143,928	+		DZA65_RS14415	0.35	-0.8
3,144,542	-		DZA65_RS14415	0.81	+0.2
3,144,809	+				+0.4
3,144,829	+				+0.9
3,144,829	+				+0.5
3,144,829	+				+1.0
3,144,829	+				-1.4
3,144,830	-				-2.6
3,144,830	-				+0.2
3,144,830	-				-0.4
3,144,830	-				+0.3
3,144,931	-		DZA65_RS14420	0.26	-2.1
3,144,964	+		DZA65_RS14420	0.32	+0.6
3,144,964	+		DZA65_RS14420	0.32	+0.3
3,144,964	+		DZA65_RS14420	0.32	+0.6
3,144,964	+		DZA65_RS14420	0.32	-0.7
3,144,964	+		DZA65_RS14420	0.32	+2.2
3,144,965	-		DZA65_RS14420	0.33	-0.5
3,144,974	+		DZA65_RS14420	0.34	-0.7
3,144,974	+		DZA65_RS14420	0.34	-0.6
3,144,975	-		DZA65_RS14420	0.35	-0.4
3,144,975	-		DZA65_RS14420	0.35	-1.1
3,144,975	-		DZA65_RS14420	0.35	-1.7
3,144,975	-		DZA65_RS14420	0.35	-0.0
3,144,976	+		DZA65_RS14420	0.35	+1.1
3,144,977	-		DZA65_RS14420	0.35	+0.1
3,144,977	-		DZA65_RS14420	0.35	+2.6
3,144,977	-		DZA65_RS14420	0.35	+1.9
3,144,977	-		DZA65_RS14420	0.35	-0.5
3,144,977	-		DZA65_RS14420	0.35	+1.0
3,144,977	-		DZA65_RS14420	0.35	+0.3
3,145,025	+		DZA65_RS14420	0.45	-1.0
3,145,026	-		DZA65_RS14420	0.45	-0.4
3,145,026	-		DZA65_RS14420	0.45	+2.0
3,145,026	-		DZA65_RS14420	0.45	+0.8
3,145,026	-		DZA65_RS14420	0.45	+1.5
3,145,026	-		DZA65_RS14420	0.45	+0.6
3,145,042	+		DZA65_RS14420	0.48	-0.5
3,145,043	-		DZA65_RS14420	0.48	+0.3
3,145,043	-		DZA65_RS14420	0.48	-0.3
3,145,043	-		DZA65_RS14420	0.48	+1.4
3,145,043	-		DZA65_RS14420	0.48	-1.0
3,145,043	-		DZA65_RS14420	0.48	+1.2
3,145,046	+		DZA65_RS14420	0.49	-2.0
3,145,046	+		DZA65_RS14420	0.49	-0.8
3,145,046	+		DZA65_RS14420	0.49	+1.3
3,145,046	+		DZA65_RS14420	0.49	+1.2
3,145,047	-		DZA65_RS14420	0.49	+1.6
3,145,047	-		DZA65_RS14420	0.49	+0.6
3,145,047	-		DZA65_RS14420	0.49	-1.4
3,145,128	+		DZA65_RS14420	0.66	-0.4
3,145,128	+		DZA65_RS14420	0.66	-1.9
3,145,129	-		DZA65_RS14420	0.66	-0.6
3,145,129	-		DZA65_RS14420	0.66	+0.3
3,145,132	+		DZA65_RS14420	0.67	-1.4
3,145,132	+		DZA65_RS14420	0.67	-2.7
3,145,133	-		DZA65_RS14420	0.67	+0.3
3,145,133	-		DZA65_RS14420	0.67	+1.1
3,145,133	-		DZA65_RS14420	0.67	-1.2
3,145,133	-		DZA65_RS14420	0.67	+0.6
3,145,133	-		DZA65_RS14420	0.67	-0.1
3,145,133	-		DZA65_RS14420	0.67	+0.5
3,145,145	+		DZA65_RS14420	0.69	-1.6
3,145,145	+		DZA65_RS14420	0.69	-0.7
3,145,145	+		DZA65_RS14420	0.69	-0.7
3,145,145	+		DZA65_RS14420	0.69	-1.4
3,145,146	-		DZA65_RS14420	0.70	+1.3
3,145,146	-		DZA65_RS14420	0.70	+2.2
3,145,146	-		DZA65_RS14420	0.70	-0.6
3,145,146	-		DZA65_RS14420	0.70	+0.0
3,145,146	-		DZA65_RS14420	0.70	-3.1
3,145,146	-		DZA65_RS14420	0.70	-0.3
3,145,147	+		DZA65_RS14420	0.70	-0.3
3,145,148	-		DZA65_RS14420	0.70	-0.1
3,145,148	-		DZA65_RS14420	0.70	+0.0
3,145,185	+		DZA65_RS14420	0.78	+0.1
3,145,186	-		DZA65_RS14420	0.78	+0.8
3,145,186	-		DZA65_RS14420	0.78	+1.6
3,145,222	+		DZA65_RS14420	0.85	-1.6
3,145,222	+		DZA65_RS14420	0.85	-1.1
3,145,222	+		DZA65_RS14420	0.85	+1.7
3,145,222	+		DZA65_RS14420	0.85	-1.4
3,145,222	+		DZA65_RS14420	0.85	+1.4
3,145,223	-		DZA65_RS14420	0.85	-0.6
3,145,223	-		DZA65_RS14420	0.85	-1.3
3,145,223	-		DZA65_RS14420	0.85	-0.4
3,145,223	-		DZA65_RS14420	0.85	+0.4
3,145,289	-				+1.2
3,145,289	-				-1.6
3,145,289	-				+0.3
3,145,289	-				-1.1
3,145,289	-				-0.1
3,145,299	+				+0.2
3,145,419	+		DZA65_RS14425	0.10	-0.4
3,145,420	-		DZA65_RS14425	0.10	+0.3
3,145,420	-		DZA65_RS14425	0.10	+0.3
3,145,548	+		DZA65_RS14425	0.21	+1.2
3,145,548	+		DZA65_RS14425	0.21	-2.7
3,145,548	+		DZA65_RS14425	0.21	-0.9
3,145,548	+		DZA65_RS14425	0.21	+0.2
3,145,548	+		DZA65_RS14425	0.21	+0.6
3,145,549	-		DZA65_RS14425	0.21	+0.0
3,145,549	-		DZA65_RS14425	0.21	+0.8
3,145,549	-		DZA65_RS14425	0.21	+1.6
3,145,549	-		DZA65_RS14425	0.21	-0.2
3,145,549	-		DZA65_RS14425	0.21	-0.2
3,145,603	-		DZA65_RS14425	0.25	-2.2
3,145,614	+		DZA65_RS14425	0.26	-2.0
3,145,614	+		DZA65_RS14425	0.26	+1.3
3,145,671	+		DZA65_RS14425	0.31	-0.4
3,145,671	+		DZA65_RS14425	0.31	-1.7
3,145,671	+		DZA65_RS14425	0.31	-0.4
3,145,671	+		DZA65_RS14425	0.31	-1.6
3,145,672	-		DZA65_RS14425	0.31	-1.4
3,145,672	-		DZA65_RS14425	0.31	+0.3
3,145,672	-		DZA65_RS14425	0.31	-0.9
3,145,672	-		DZA65_RS14425	0.31	+0.6
3,145,672	-		DZA65_RS14425	0.31	-0.7
3,145,682	+		DZA65_RS14425	0.31	-1.0
3,145,682	+		DZA65_RS14425	0.31	-2.0
3,145,682	+		DZA65_RS14425	0.31	+1.2
3,145,715	+		DZA65_RS14425	0.34	+2.4
3,145,716	-		DZA65_RS14425	0.34	+1.8
3,145,720	-		DZA65_RS14425	0.35	+0.5
3,145,720	-		DZA65_RS14425	0.35	+0.3
3,145,749	+		DZA65_RS14425	0.37	-0.4
3,145,750	-		DZA65_RS14425	0.37	+0.3
3,145,750	-		DZA65_RS14425	0.37	-0.5
3,145,750	-				+0.0
3,145,750	-		DZA65_RS14425	0.37	+1.6
3,145,750	-		DZA65_RS14425	0.37	+0.8
3,145,750	-		DZA65_RS14425	0.37	-0.2
3,145,776	+		DZA65_RS14425	0.39	+1.3
3,145,779	+		DZA65_RS14425	0.39	-1.3