Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14225

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,088,732	-				-0.0
3,088,732	-				+0.6
3,088,732	-				+0.4
3,088,732	-				-0.8
3,088,732	-				+0.8
3,088,732	-				+0.6
3,088,732	-				+0.2
3,088,732	-				+1.0
3,088,732	-				-2.2
3,088,733	+				+0.1
3,088,733	+				-0.1
3,088,733	+				-1.0
3,088,734	-				-1.4
3,088,734	-				-0.4
3,088,734	-				+0.7
3,088,734	-				-0.9
3,088,845	+				+1.0
3,088,846	-				+0.8
3,088,872	-				+0.2
3,088,872	-				-0.8
3,088,872	-				-1.5
3,088,872	-				+1.3
3,088,976	-				-1.0
3,089,143	+				-0.2
3,089,144	-				+0.9
3,089,144	-				-0.4
3,089,144	-				-1.3
3,089,144	-				-1.2
3,089,161	+				+0.4
3,089,174	+				-2.0
3,089,258	+				-1.0
3,089,258	+				+0.6
3,089,258	+				+0.9
3,089,258	+				-2.6
3,089,293	-				-0.6
3,089,345	+				+0.1
3,089,345	+				+0.4
3,089,345	+				-0.1
3,089,346	-				+0.9
3,089,346	-				+1.3
3,089,396	-				+0.4
3,089,401	+				-0.5
3,089,402	-				+1.0
3,089,407	-				-3.2
3,089,445	+				-0.2
3,089,536	+				+1.4
3,089,537	-				-2.0
3,089,566	+				+1.2
3,089,583	+				-0.7
3,089,583	+				+3.6
3,089,583	+				+2.1
3,089,583	+				+0.1
3,089,583	+				+0.4
3,089,583	+				-0.3
3,089,583	+				-0.3
3,089,583	+				-0.0
3,089,584	-				-0.5
3,089,584	-				-0.8
3,089,584	-				+0.6
3,089,584	-				-0.6
3,089,584	-				-0.6
3,089,584	-				-1.2
3,089,584	-				+0.0
3,089,584	-				+0.6
3,089,584	-				+0.6
3,089,660	-				-0.4
3,089,685	+				-0.4
3,089,686	-				-1.8
3,089,686	-				-1.0
3,089,739	+				+1.4
3,089,739	+				-0.4
3,089,739	+				+0.2
3,089,739	+				+2.2
3,089,740	-				+1.0
3,089,774	+				-1.3
3,089,774	+				-0.3
3,089,774	+				-0.4
3,089,774	+				+0.4
3,089,774	+				+0.6
3,089,774	+				+0.7
3,089,775	-				+0.6
3,089,775	-				-0.1
3,089,775	-				-1.4
3,089,775	-				-1.5
3,089,783	+				-0.9
3,089,783	+				-0.2
3,089,784	-				+0.5
3,089,784	-				-1.0
3,089,784	-				-0.7
3,089,814	+				+0.2
3,089,814	+				+0.0
3,089,815	-				+0.2
3,089,815	-				-0.2
3,089,815	-				-1.0
3,089,815	-				-0.6
3,089,909	+		DZA65_RS14225	0.16	-0.7
3,089,910	-		DZA65_RS14225	0.16	-0.8
3,089,929	-		DZA65_RS14225	0.17	+0.1
3,089,937	+		DZA65_RS14225	0.18	+0.1
3,089,938	-		DZA65_RS14225	0.18	-0.8
3,089,938	-		DZA65_RS14225	0.18	+1.3
3,089,943	+		DZA65_RS14225	0.19	+1.2
3,089,944	-		DZA65_RS14225	0.19	-1.4
3,089,968	+		DZA65_RS14225	0.21	+0.6
3,090,007	+		DZA65_RS14225	0.24	-0.3
3,090,007	+		DZA65_RS14225	0.24	+0.3
3,090,008	-		DZA65_RS14225	0.24	-0.0
3,090,024	+				-1.4
3,090,024	+		DZA65_RS14225	0.26	+0.6
3,090,024	+		DZA65_RS14225	0.26	-1.4
3,090,024	+		DZA65_RS14225	0.26	+0.2
3,090,024	+		DZA65_RS14225	0.26	-0.5
3,090,025	-		DZA65_RS14225	0.26	-0.3
3,090,025	-		DZA65_RS14225	0.26	+0.9
3,090,025	-		DZA65_RS14225	0.26	+0.6
3,090,025	-		DZA65_RS14225	0.26	-0.1
3,090,025	-		DZA65_RS14225	0.26	+0.6
3,090,151	-		DZA65_RS14225	0.37	+1.0
3,090,154	+		DZA65_RS14225	0.37	-0.4
3,090,154	+		DZA65_RS14225	0.37	+0.9
3,090,155	-		DZA65_RS14225	0.37	+0.6
3,090,155	-		DZA65_RS14225	0.37	+0.6
3,090,162	+		DZA65_RS14225	0.38	-0.2
3,090,163	-		DZA65_RS14225	0.38	-2.6
3,090,206	+		DZA65_RS14225	0.42	-0.4
3,090,207	-		DZA65_RS14225	0.42	-0.3
3,090,211	+		DZA65_RS14225	0.42	-0.6
3,090,212	-		DZA65_RS14225	0.42	-0.8
3,090,213	+		DZA65_RS14225	0.42	-0.5
3,090,213	+		DZA65_RS14225	0.42	-0.4
3,090,214	-		DZA65_RS14225	0.43	-2.2
3,090,214	-		DZA65_RS14225	0.43	-0.8
3,090,272	+		DZA65_RS14225	0.48	-0.7
3,090,286	+		DZA65_RS14225	0.49	+1.3
3,090,287	-		DZA65_RS14225	0.49	-0.3
3,090,297	+		DZA65_RS14225	0.50	+1.0
3,090,359	+		DZA65_RS14225	0.55	+0.2
3,090,359	+		DZA65_RS14225	0.55	+1.2
3,090,360	-		DZA65_RS14225	0.55	+2.6
3,090,360	-		DZA65_RS14225	0.55	+2.2
3,090,379	+		DZA65_RS14225	0.57	+0.4
3,090,379	+		DZA65_RS14225	0.57	-1.8
3,090,380	-		DZA65_RS14225	0.57	-0.3
3,090,380	-		DZA65_RS14225	0.57	+0.4
3,090,393	-		DZA65_RS14225	0.58	+0.5
3,090,411	+		DZA65_RS14225	0.60	-0.0
3,090,411	+		DZA65_RS14225	0.60	+0.1
3,090,411	+		DZA65_RS14225	0.60	-1.3
3,090,411	+		DZA65_RS14225	0.60	-0.1
3,090,412	-		DZA65_RS14225	0.60	+0.3
3,090,412	-		DZA65_RS14225	0.60	+0.4
3,090,412	-		DZA65_RS14225	0.60	+0.2
3,090,412	-		DZA65_RS14225	0.60	-0.4
3,090,412	-		DZA65_RS14225	0.60	+0.1
3,090,412	-		DZA65_RS14225	0.60	+0.7
3,090,412	-		DZA65_RS14225	0.60	-1.8
3,090,412	-				-0.4
3,090,412	-		DZA65_RS14225	0.60	-0.6
3,090,412	-		DZA65_RS14225	0.60	+0.8
3,090,412	-		DZA65_RS14225	0.60	+0.1
3,090,412	-		DZA65_RS14225	0.60	-0.5
3,090,430	+		DZA65_RS14225	0.62	-0.7
3,090,560	+		DZA65_RS14225	0.73	-0.1
3,090,561	-		DZA65_RS14225	0.73	-1.2
3,090,592	-		DZA65_RS14225	0.76	-1.5
3,090,610	+		DZA65_RS14225	0.77	-2.9
3,090,611	-		DZA65_RS14225	0.78	-0.8
3,090,618	+		DZA65_RS14225	0.78	+0.3
3,090,618	+		DZA65_RS14225	0.78	+0.9
3,090,619	-		DZA65_RS14225	0.78	+0.3
3,090,619	-		DZA65_RS14225	0.78	+0.8
3,090,622	+		DZA65_RS14225	0.78	-0.0
3,090,622	+		DZA65_RS14225	0.78	-2.4
3,090,623	-		DZA65_RS14225	0.79	+0.2
3,090,715	-		DZA65_RS14225	0.87	+1.5
3,090,715	-		DZA65_RS14225	0.87	+1.2
3,090,715	-		DZA65_RS14225	0.87	-1.5
3,090,715	-		DZA65_RS14225	0.87	+0.9
3,090,715	-		DZA65_RS14225	0.87	-0.2
3,090,740	-		DZA65_RS14225	0.89	-0.8
3,090,762	+				+0.5
3,090,762	+				+0.9
3,090,763	-				+1.6
3,090,763	-				-0.9
3,090,775	+				+0.9
3,090,776	-				-1.4
3,090,813	-				+0.1
3,090,854	+				-0.5
3,090,855	-				-2.0
3,090,855	-				+1.1
3,090,914	-				-1.0
3,090,952	+				+0.3
3,090,985	-				+0.4
3,090,985	-				+2.6
3,090,996	+				+0.1
3,090,996	+				+1.2
3,090,996	+				-0.8
3,090,997	-				-0.4
3,091,002	+				-0.8
3,091,019	+				+1.1
3,091,126	+				+1.2
3,091,126	+				-0.3
3,091,126	+				+0.5
3,091,128	+				+1.1
3,091,128	+				-1.8
3,091,129	-				-1.3
3,091,138	-				+4.1
3,091,255	+				+1.4
3,091,255	+				+0.5
3,091,283	+				+1.1
3,091,284	-				-0.2
3,091,284	-				-2.1
3,091,315	+				+0.8
3,091,320	+				-0.5
3,091,321	-				-0.4
3,091,352	-				-0.4
3,091,352	-				+2.7
3,091,412	-				+1.9
3,091,425	+				-2.2
3,091,425	+				-1.9
3,091,425	+				-1.2
3,091,425	+				-1.8
3,091,425	+				+0.2
3,091,425	+				+0.2
3,091,426	-				-0.9
3,091,426	-				-0.1
3,091,426	-				+1.7
3,091,426	-				+0.6
3,091,426	-				-1.0
3,091,426	-				+1.0
3,091,426	-				-0.0
3,091,431	+				-0.7
3,091,432	-				-0.8
3,091,432	-				-0.8
3,091,432	-				+0.7
3,091,509	+				-1.2
3,091,509	+				+0.1
3,091,509	+				+1.7
3,091,509	+				+0.3
3,091,509	+				-0.2
3,091,509	+				+1.0
3,091,509	+				-0.0
3,091,509	+				-1.3
3,091,510	-				-1.0
3,091,510	-				-1.2
3,091,510	-				+0.3
3,091,510	-				-0.1
3,091,510	-				-1.4
3,091,510	-				+0.2
3,091,510	-				-2.2
3,091,510	-				+0.7
3,091,510	-				-2.2
3,091,686	-		DZA65_RS14230	0.11	-0.8
3,091,686	-		DZA65_RS14230	0.11	+0.3
3,091,691	+		DZA65_RS14230	0.11	+1.7
3,091,692	-		DZA65_RS14230	0.11	-1.8
3,091,692	-		DZA65_RS14230	0.11	+1.2
3,091,692	-		DZA65_RS14230	0.11	+1.0
3,091,692	-		DZA65_RS14230	0.11	+0.6
3,091,692	-		DZA65_RS14230	0.11	-0.4
3,091,692	-		DZA65_RS14230	0.11	-1.4
3,091,836	+		DZA65_RS14230	0.13	-2.2
3,091,837	-		DZA65_RS14230	0.13	-0.8
3,091,837	-				-0.4
3,091,837	-		DZA65_RS14230	0.13	-1.0
3,091,837	-		DZA65_RS14230	0.13	-1.8