Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS14000

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
3,004,211	-		DZA65_RS13995	0.22	+0.8
3,004,211	-		DZA65_RS13995	0.22	-2.0
3,004,211	-		DZA65_RS13995	0.22	-2.4
3,004,244	+		DZA65_RS13995	0.25	+2.5
3,004,244	+		DZA65_RS13995	0.25	-0.6
3,004,245	-		DZA65_RS13995	0.25	-0.2
3,004,254	+		DZA65_RS13995	0.26	-0.4
3,004,281	-		DZA65_RS13995	0.28	-0.6
3,004,304	+		DZA65_RS13995	0.30	-1.6
3,004,305	-		DZA65_RS13995	0.30	-0.8
3,004,305	-		DZA65_RS13995	0.30	-2.4
3,004,413	+		DZA65_RS13995	0.39	+0.3
3,004,414	-		DZA65_RS13995	0.39	-0.6
3,004,422	+		DZA65_RS13995	0.40	-0.8
3,004,422	+		DZA65_RS13995	0.40	-0.8
3,004,423	-		DZA65_RS13995	0.40	-1.3
3,004,506	+		DZA65_RS13995	0.47	-0.0
3,004,517	+		DZA65_RS13995	0.48	+0.7
3,004,518	-				-1.4
3,004,518	-		DZA65_RS13995	0.48	-0.4
3,004,518	-		DZA65_RS13995	0.48	-0.3
3,004,533	+		DZA65_RS13995	0.49	-0.4
3,004,553	+		DZA65_RS13995	0.51	-1.4
3,004,553	+		DZA65_RS13995	0.51	-3.7
3,004,553	+		DZA65_RS13995	0.51	+0.8
3,004,567	-		DZA65_RS13995	0.52	-0.0
3,004,567	-		DZA65_RS13995	0.52	-1.8
3,004,584	+		DZA65_RS13995	0.53	-0.4
3,004,584	+		DZA65_RS13995	0.53	-1.2
3,004,584	+		DZA65_RS13995	0.53	-1.8
3,004,584	+		DZA65_RS13995	0.53	-1.0
3,004,584	+		DZA65_RS13995	0.53	+0.6
3,004,584	+		DZA65_RS13995	0.53	-1.8
3,004,584	+		DZA65_RS13995	0.53	-2.0
3,004,585	-		DZA65_RS13995	0.54	-1.1
3,004,585	-		DZA65_RS13995	0.54	-2.3
3,004,585	-		DZA65_RS13995	0.54	+0.6
3,004,585	-		DZA65_RS13995	0.54	-1.4
3,004,589	+		DZA65_RS13995	0.54	-2.3
3,004,589	+		DZA65_RS13995	0.54	-0.6
3,004,589	+		DZA65_RS13995	0.54	+0.8
3,004,590	-		DZA65_RS13995	0.54	-0.2
3,004,590	-		DZA65_RS13995	0.54	+0.1
3,004,590	-		DZA65_RS13995	0.54	-0.6
3,004,590	-		DZA65_RS13995	0.54	-1.9
3,004,590	-		DZA65_RS13995	0.54	+0.6
3,004,590	-		DZA65_RS13995	0.54	-0.4
3,004,590	-		DZA65_RS13995	0.54	-1.0
3,004,590	-		DZA65_RS13995	0.54	+6.3
3,004,590	-		DZA65_RS13995	0.54	+1.6
3,004,590	-		DZA65_RS13995	0.54	+1.6
3,004,599	+		DZA65_RS13995	0.55	+0.6
3,004,600	-		DZA65_RS13995	0.55	-2.0
3,004,600	-		DZA65_RS13995	0.55	+0.4
3,004,600	-		DZA65_RS13995	0.55	-0.8
3,004,608	+		DZA65_RS13995	0.55	+0.3
3,004,608	+		DZA65_RS13995	0.55	+2.9
3,004,608	+		DZA65_RS13995	0.55	-1.9
3,004,609	-		DZA65_RS13995	0.56	-0.7
3,004,610	+		DZA65_RS13995	0.56	+3.4
3,004,610	+		DZA65_RS13995	0.56	-1.9
3,004,610	+		DZA65_RS13995	0.56	+0.0
3,004,610	+		DZA65_RS13995	0.56	-0.8
3,004,610	+		DZA65_RS13995	0.56	-1.6
3,004,610	+		DZA65_RS13995	0.56	-1.1
3,004,610	+		DZA65_RS13995	0.56	-0.9
3,004,611	-		DZA65_RS13995	0.56	-0.6
3,004,611	-		DZA65_RS13995	0.56	+1.5
3,004,611	-		DZA65_RS13995	0.56	-1.3
3,004,611	-		DZA65_RS13995	0.56	-3.6
3,004,611	-		DZA65_RS13995	0.56	-0.4
3,004,611	-		DZA65_RS13995	0.56	-0.3
3,004,611	-		DZA65_RS13995	0.56	+0.6
3,004,620	+		DZA65_RS13995	0.56	+0.2
3,004,620	+		DZA65_RS13995	0.56	+0.7
3,004,620	+		DZA65_RS13995	0.56	-0.1
3,004,620	+		DZA65_RS13995	0.56	+0.4
3,004,621	-		DZA65_RS13995	0.56	-1.9
3,004,621	-		DZA65_RS13995	0.56	-1.0
3,004,621	-		DZA65_RS13995	0.56	-1.3
3,004,621	-		DZA65_RS13995	0.56	-0.3
3,004,812	+		DZA65_RS13995	0.72	+0.6
3,004,813	-		DZA65_RS13995	0.72	+0.0
3,004,813	-		DZA65_RS13995	0.72	-0.8
3,004,816	-		DZA65_RS13995	0.73	-1.0
3,004,862	+		DZA65_RS13995	0.77	-0.7
3,004,863	-		DZA65_RS13995	0.77	-1.8
3,004,863	-		DZA65_RS13995	0.77	-1.8
3,004,881	+		DZA65_RS13995	0.78	-1.1
3,004,895	+		DZA65_RS13995	0.79	+0.2
3,004,895	+		DZA65_RS13995	0.79	+0.3
3,004,938	+		DZA65_RS13995	0.83	+0.1
3,004,938	+		DZA65_RS13995	0.83	-0.4
3,004,938	+		DZA65_RS13995	0.83	-1.3
3,004,938	+		DZA65_RS13995	0.83	-1.0
3,004,938	+		DZA65_RS13995	0.83	-1.1
3,004,939	-		DZA65_RS13995	0.83	-0.9
3,004,939	-		DZA65_RS13995	0.83	+0.8
3,004,939	-		DZA65_RS13995	0.83	+0.6
3,004,947	+		DZA65_RS13995	0.84	+1.0
3,004,947	+		DZA65_RS13995	0.84	+0.4
3,004,948	-		DZA65_RS13995	0.84	-1.0
3,004,948	-		DZA65_RS13995	0.84	-1.4
3,004,948	-		DZA65_RS13995	0.84	-0.1
3,004,948	-		DZA65_RS13995	0.84	+0.1
3,004,973	-		DZA65_RS13995	0.86	-0.3
3,004,999	+		DZA65_RS13995	0.88	-0.8
3,004,999	+		DZA65_RS13995	0.88	-3.5
3,004,999	+		DZA65_RS13995	0.88	-1.6
3,005,000	-		DZA65_RS13995	0.88	-1.8
3,005,000	-		DZA65_RS13995	0.88	-1.8
3,005,000	-		DZA65_RS13995	0.88	+1.4
3,005,015	+		DZA65_RS13995	0.89	+1.1
3,005,015	+		DZA65_RS13995	0.89	-1.4
3,005,015	+		DZA65_RS13995	0.89	-0.8
3,005,015	+		DZA65_RS13995	0.89	-0.3
3,005,015	+		DZA65_RS13995	0.89	-0.8
3,005,015	+		DZA65_RS13995	0.89	-0.7
3,005,015	+		DZA65_RS13995	0.89	+2.0
3,005,015	+		DZA65_RS13995	0.89	-1.6
3,005,015	+		DZA65_RS13995	0.89	+1.0
3,005,015	+		DZA65_RS13995	0.89	-0.6
3,005,015	+		DZA65_RS13995	0.89	+1.6
3,005,015	+		DZA65_RS13995	0.89	+0.3
3,005,015	+		DZA65_RS13995	0.89	+0.7
3,005,015	+		DZA65_RS13995	0.89	-0.1
3,005,015	+		DZA65_RS13995	0.89	+0.6
3,005,015	+		DZA65_RS13995	0.89	+0.0
3,005,015	+		DZA65_RS13995	0.89	-1.3
3,005,015	+		DZA65_RS13995	0.89	-1.7
3,005,015	+		DZA65_RS13995	0.89	-1.3
3,005,015	+		DZA65_RS13995	0.89	-1.0
3,005,015	+		DZA65_RS13995	0.89	-1.8
3,005,015	+		DZA65_RS13995	0.89	-0.1
3,005,015	+		DZA65_RS13995	0.89	-2.8
3,005,015	+		DZA65_RS13995	0.89	-0.4
3,005,015	+		DZA65_RS13995	0.89	-2.9
3,005,015	+		DZA65_RS13995	0.89	+0.6
3,005,015	+		DZA65_RS13995	0.89	-0.1
3,005,015	+		DZA65_RS13995	0.89	-0.2
3,005,016	-		DZA65_RS13995	0.89	-0.8
3,005,016	-		DZA65_RS13995	0.89	-2.4
3,005,016	-		DZA65_RS13995	0.89	+1.0
3,005,016	-		DZA65_RS13995	0.89	+1.1
3,005,016	-		DZA65_RS13995	0.89	-3.1
3,005,016	-		DZA65_RS13995	0.89	-2.8
3,005,016	-		DZA65_RS13995	0.89	-1.7
3,005,016	-		DZA65_RS13995	0.89	-1.4
3,005,016	-		DZA65_RS13995	0.89	-0.4
3,005,016	-		DZA65_RS13995	0.89	-2.8
3,005,016	-		DZA65_RS13995	0.89	+0.2
3,005,016	-		DZA65_RS13995	0.89	+0.3
3,005,016	-		DZA65_RS13995	0.89	-0.1
3,005,016	-		DZA65_RS13995	0.89	-1.0
3,005,016	-		DZA65_RS13995	0.89	-0.9
3,005,016	-		DZA65_RS13995	0.89	-2.9
3,005,016	-		DZA65_RS13995	0.89	-1.2
3,005,016	-		DZA65_RS13995	0.89	-0.6
3,005,016	-		DZA65_RS13995	0.89	+0.1
3,005,016	-		DZA65_RS13995	0.89	+0.6
3,005,016	-		DZA65_RS13995	0.89	-2.6
3,005,016	-		DZA65_RS13995	0.89	-0.0
3,005,016	-		DZA65_RS13995	0.89	-2.0
3,005,016	-		DZA65_RS13995	0.89	-1.3
3,005,016	-		DZA65_RS13995	0.89	-0.5
3,005,016	-		DZA65_RS13995	0.89	-2.0
3,005,016	-		DZA65_RS13995	0.89	-0.8
3,005,016	-		DZA65_RS13995	0.89	+1.6
3,005,016	-		DZA65_RS13995	0.89	-1.3
3,005,016	-		DZA65_RS13995	0.89	+1.2
3,005,034	+				-2.8
3,005,035	-				+0.1
3,005,035	-				-0.8
3,005,079	+				-0.4
3,005,101	-				-0.7
3,005,113	+				-1.3
3,005,114	-				+1.6
3,005,114	-				-1.0
3,005,142	+				+0.0
3,005,142	+				-1.7
3,005,142	+				-0.7
3,005,143	-				-1.3
3,005,143	-				-0.0
3,005,143	-				-0.9
3,005,171	+				-0.4
3,005,171	+				-0.4
3,005,172	-				-1.4
3,005,195	+				-1.4
3,005,196	-				+0.7
3,005,196	-				+0.6
3,005,196	-				+0.1
3,005,198	-				-2.3
3,005,203	+				-2.3
3,005,211	-				+0.7
3,005,224	+				+0.6
3,005,224	+				+0.3
3,005,224	+				-1.2
3,005,224	+				+1.6
3,005,224	+				-1.3
3,005,224	+				+0.8
3,005,224	+				-1.3
3,005,224	+				-0.6
3,005,224	+				-4.4
3,005,225	-				+0.6
3,005,225	-				-0.9
3,005,225	-				-1.0
3,005,225	-				-2.3
3,005,225	-				-0.0
3,005,225	-				-0.0
3,005,225	-				+0.4
3,005,225	-				-0.6
3,005,225	-				+0.1
3,005,225	-				+0.2
3,005,225	-				-0.2
3,005,225	-				+0.3
3,005,225	-				+0.3
3,005,225	-				-2.0
3,005,225	-				-1.4
3,005,225	-				-1.8
3,005,225	-				-1.9
3,005,225	-				+1.0
3,005,266	+				-1.4
3,005,303	+		DZA65_RS14000	0.14	+0.7
3,005,304	-		DZA65_RS14000	0.14	-0.8
3,005,304	-		DZA65_RS14000	0.14	-4.2
3,005,304	-		DZA65_RS14000	0.14	-1.3
3,005,309	+		DZA65_RS14000	0.15	-1.5
3,005,309	+		DZA65_RS14000	0.15	-0.8
3,005,309	+		DZA65_RS14000	0.15	+1.3
3,005,309	+		DZA65_RS14000	0.15	-2.0
3,005,309	+		DZA65_RS14000	0.15	-1.4
3,005,310	-		DZA65_RS14000	0.15	-0.4
3,005,310	-		DZA65_RS14000	0.15	+1.3
3,005,327	-		DZA65_RS14000	0.18	+0.1
3,005,338	-		DZA65_RS14000	0.19	-1.8
3,005,338	-		DZA65_RS14000	0.19	-1.2
3,005,349	+		DZA65_RS14000	0.21	-0.6
3,005,367	+		DZA65_RS14000	0.24	-1.4
3,005,367	+		DZA65_RS14000	0.24	-2.4
3,005,367	+		DZA65_RS14000	0.24	-2.5
3,005,367	+		DZA65_RS14000	0.24	-1.6
3,005,367	+		DZA65_RS14000	0.24	+1.6
3,005,367	+		DZA65_RS14000	0.24	+0.5
3,005,367	+		DZA65_RS14000	0.24	+1.6
3,005,367	+		DZA65_RS14000	0.24	-1.8
3,005,367	+		DZA65_RS14000	0.24	-1.5
3,005,367	+		DZA65_RS14000	0.24	+0.3
3,005,368	-		DZA65_RS14000	0.24	+2.0
3,005,368	-		DZA65_RS14000	0.24	+1.1
3,005,368	-		DZA65_RS14000	0.24	+0.6
3,005,368	-		DZA65_RS14000	0.24	-1.9
3,005,368	-		DZA65_RS14000	0.24	-0.9
3,005,368	-		DZA65_RS14000	0.24	-3.1
3,005,369	+		DZA65_RS14000	0.24	-2.9
3,005,369	+		DZA65_RS14000	0.24	+0.1
3,005,370	-		DZA65_RS14000	0.24	-0.3
3,005,370	-		DZA65_RS14000	0.24	-0.0
3,005,370	-		DZA65_RS14000	0.24	+0.2
3,005,391	+		DZA65_RS14000	0.27	-2.3
3,005,391	+		DZA65_RS14000	0.27	-2.6
3,005,392	-		DZA65_RS14000	0.27	-1.3
3,005,421	-		DZA65_RS14000	0.32	-2.0
3,005,421	-		DZA65_RS14000	0.32	-2.0
3,005,421	-		DZA65_RS14000	0.32	-1.7
3,005,458	-		DZA65_RS14000	0.37	-2.1
3,005,491	-		DZA65_RS14000	0.42	-0.4
3,005,491	-		DZA65_RS14000	0.42	-1.3
3,005,491	-		DZA65_RS14000	0.42	-0.3
3,005,491	-		DZA65_RS14000	0.42	-0.3
3,005,522	-		DZA65_RS14000	0.47	+0.9
3,005,522	-		DZA65_RS14000	0.47	+1.2
3,005,693	-		DZA65_RS14000	0.72	-1.0
3,005,693	-				+1.6
3,005,784	+		DZA65_RS14000	0.86	-1.1
3,005,784	+		DZA65_RS14000	0.86	-1.3
3,005,785	-		DZA65_RS14000	0.86	-1.3
3,005,785	-		DZA65_RS14000	0.86	-0.4
3,005,785	-		DZA65_RS14000	0.86	-2.4
3,005,791	+		DZA65_RS14000	0.87	-1.8
3,005,805	+		DZA65_RS14000	0.89	-1.8
3,005,805	+		DZA65_RS14000	0.89	+1.1
3,005,805	+		DZA65_RS14000	0.89	-1.0
3,005,805	+		DZA65_RS14000	0.89	-1.0
3,005,805	+		DZA65_RS14000	0.89	+2.6
3,005,805	+		DZA65_RS14000	0.89	+1.0
3,005,805	+		DZA65_RS14000	0.89	-0.3
3,005,805	+		DZA65_RS14000	0.89	-3.0
3,005,806	-		DZA65_RS14000	0.89	-1.8
3,005,806	-		DZA65_RS14000	0.89	-2.3
3,005,806	-		DZA65_RS14000	0.89	-0.4
3,005,806	-		DZA65_RS14000	0.89	-0.4
3,005,841	+				+1.0
3,005,841	+				-2.0
3,005,841	+				-0.8
3,005,842	-				-1.0
3,005,842	-				-1.5
3,005,844	+				+0.7
3,005,844	+				-2.0
3,005,845	-				-0.3
3,005,845	-				+1.1
3,005,845	-				+0.6
3,005,845	-				-0.2
3,005,845	-				-0.0
3,005,874	+				+0.2
3,005,894	+				+0.2
3,005,894	+				+0.4
3,005,895	-				-0.0
3,005,908	+				-1.3
3,005,909	-				+1.2
3,005,937	+		DZA65_RS14005	0.11	+0.7
3,005,937	+		DZA65_RS14005	0.11	-1.4
3,005,937	+		DZA65_RS14005	0.11	-1.6
3,005,937	+		DZA65_RS14005	0.11	-0.1
3,005,963	+		DZA65_RS14005	0.17	-0.3
3,005,964	-		DZA65_RS14005	0.18	-0.9
3,006,029	+		DZA65_RS14005	0.34	-0.4
3,006,029	+		DZA65_RS14005	0.34	-0.6
3,006,029	+		DZA65_RS14005	0.34	-2.3
3,006,029	+		DZA65_RS14005	0.34	+0.7
3,006,030	-		DZA65_RS14005	0.34	-2.4
3,006,030	-		DZA65_RS14005	0.34	-0.6
3,006,065	+		DZA65_RS14005	0.42	+2.1
3,006,065	+		DZA65_RS14005	0.42	-1.6
3,006,065	+		DZA65_RS14005	0.42	+0.3
3,006,065	+		DZA65_RS14005	0.42	-1.0
3,006,065	+		DZA65_RS14005	0.42	+2.1
3,006,282	+				-1.6
3,006,285	+				-1.2
3,006,286	-				+1.6
3,006,286	-				-1.0
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3,006,290	-				-2.5
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3,006,433	-		DZA65_RS14010	0.24	+0.1
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3,006,865	+				-0.8
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3,006,871	+				+0.6
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