Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS13540

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,906,364	+		DZA65_RS13535	0.42	+0.5
2,906,448	+		DZA65_RS13535	0.48	+1.3
2,906,449	-		DZA65_RS13535	0.48	-1.1
2,906,450	+		DZA65_RS13535	0.48	+0.8
2,906,450	+		DZA65_RS13535	0.48	-1.2
2,906,450	+		DZA65_RS13535	0.48	-1.1
2,906,450	+		DZA65_RS13535	0.48	+0.1
2,906,450	+		DZA65_RS13535	0.48	-0.1
2,906,450	+		DZA65_RS13535	0.48	+0.5
2,906,450	+		DZA65_RS13535	0.48	+0.9
2,906,451	-		DZA65_RS13535	0.48	+0.5
2,906,451	-		DZA65_RS13535	0.48	-0.8
2,906,451	-		DZA65_RS13535	0.48	+2.8
2,906,515	+		DZA65_RS13535	0.52	-2.1
2,906,515	+		DZA65_RS13535	0.52	-1.1
2,906,516	-		DZA65_RS13535	0.52	+0.8
2,906,516	-		DZA65_RS13535	0.52	-0.5
2,906,516	-		DZA65_RS13535	0.52	-0.3
2,906,516	-		DZA65_RS13535	0.52	+0.5
2,906,523	+		DZA65_RS13535	0.53	-0.8
2,906,526	+		DZA65_RS13535	0.53	+0.1
2,906,527	-		DZA65_RS13535	0.53	-2.1
2,906,538	-		DZA65_RS13535	0.54	-1.0
2,906,701	+		DZA65_RS13535	0.64	+1.6
2,906,701	+		DZA65_RS13535	0.64	-0.9
2,906,702	-		DZA65_RS13535	0.64	-0.3
2,906,750	+		DZA65_RS13535	0.68	-1.5
2,906,751	-				+2.5
2,906,751	-		DZA65_RS13535	0.68	+2.2
2,906,874	-		DZA65_RS13535	0.76	-0.1
2,906,921	-		DZA65_RS13535	0.79	-1.4
2,906,952	+		DZA65_RS13535	0.81	-1.8
2,907,001	+		DZA65_RS13535	0.84	-0.2
2,907,001	+		DZA65_RS13535	0.84	-0.9
2,907,001	+		DZA65_RS13535	0.84	+2.4
2,907,002	-		DZA65_RS13535	0.84	-0.5
2,907,002	-		DZA65_RS13535	0.84	-0.5
2,907,116	-				-1.1
2,907,174	+				+0.2
2,907,174	+				+0.3
2,907,174	+				+0.0
2,907,174	+				+1.5
2,907,175	-				-0.3
2,907,253	+				+0.7
2,907,265	-				-1.5
2,907,280	+				+0.7
2,907,281	-				+0.7
2,907,321	-				-2.9
2,907,335	+				+2.6
2,907,336	-				-0.8
2,907,336	-				+0.8
2,907,362	+				-1.5
2,907,362	+				+0.5
2,907,363	-				-0.2
2,907,368	-				+0.1
2,907,440	+				-0.9
2,907,440	+				-0.9
2,907,440	+				+0.8
2,907,441	-				+1.0
2,907,441	-				-0.6
2,907,537	+		DZA65_RS13540	0.14	+0.7
2,907,537	+		DZA65_RS13540	0.14	+0.3
2,907,538	-		DZA65_RS13540	0.14	+0.2
2,907,538	-		DZA65_RS13540	0.14	+0.2
2,907,538	-		DZA65_RS13540	0.14	-1.0
2,907,538	-		DZA65_RS13540	0.14	-1.1
2,907,538	-		DZA65_RS13540	0.14	+0.3
2,907,575	-		DZA65_RS13540	0.17	-0.2
2,907,626	+		DZA65_RS13540	0.21	-1.5
2,907,626	+		DZA65_RS13540	0.21	+1.6
2,907,626	+		DZA65_RS13540	0.21	-1.4
2,907,626	+		DZA65_RS13540	0.21	+0.5
2,907,626	+		DZA65_RS13540	0.21	+0.1
2,907,626	+		DZA65_RS13540	0.21	-0.2
2,907,626	+		DZA65_RS13540	0.21	-0.5
2,907,626	+		DZA65_RS13540	0.21	-0.7
2,907,627	-		DZA65_RS13540	0.21	-1.8
2,907,627	-		DZA65_RS13540	0.21	-0.9
2,907,627	-		DZA65_RS13540	0.21	-0.1
2,907,627	-		DZA65_RS13540	0.21	-0.1
2,907,627	-		DZA65_RS13540	0.21	+1.2
2,907,627	-		DZA65_RS13540	0.21	-0.3
2,907,714	+		DZA65_RS13540	0.27	+0.9
2,907,715	-		DZA65_RS13540	0.27	-3.1
2,907,715	-		DZA65_RS13540	0.27	-0.8
2,907,733	+		DZA65_RS13540	0.29	-0.3
2,907,734	-		DZA65_RS13540	0.29	-1.1
2,908,241	+		DZA65_RS13540	0.66	-0.5
2,908,343	+		DZA65_RS13540	0.74	-0.6
2,908,344	-		DZA65_RS13540	0.74	-1.4
2,908,344	-		DZA65_RS13540	0.74	-1.8
2,908,550	+		DZA65_RS13540	0.89	+0.1
2,908,551	-		DZA65_RS13540	0.89	-2.3
2,908,551	-		DZA65_RS13540	0.89	-0.5
2,908,551	-		DZA65_RS13540	0.89	-0.1
2,908,843	-		DZA65_RS13545	0.12	-0.3
2,908,843	-		DZA65_RS13545	0.12	-1.5
2,908,992	+		DZA65_RS13545	0.30	+1.7
2,909,010	+		DZA65_RS13545	0.32	+0.4
2,909,011	-		DZA65_RS13545	0.32	+1.3
2,909,011	-		DZA65_RS13545	0.32	-0.5
2,909,038	+		DZA65_RS13545	0.36	+2.2
2,909,039	-		DZA65_RS13545	0.36	-0.1
2,909,039	-		DZA65_RS13545	0.36	-1.1
2,909,046	+		DZA65_RS13545	0.37	+1.2
2,909,046	+				+2.4
2,909,046	+		DZA65_RS13545	0.37	-0.4
2,909,047	-		DZA65_RS13545	0.37	+0.1
2,909,047	-		DZA65_RS13545	0.37	-0.9
2,909,047	-		DZA65_RS13545	0.37	+1.3
2,909,328	+		DZA65_RS13545	0.71	+3.3
2,909,328	+		DZA65_RS13545	0.71	+1.2
2,909,329	-		DZA65_RS13545	0.71	-0.9
2,909,329	-		DZA65_RS13545	0.71	-0.9
2,909,329	-		DZA65_RS13545	0.71	-1.7
2,909,329	-		DZA65_RS13545	0.71	-1.1
2,909,388	+		DZA65_RS13545	0.78	+1.0
2,909,388	+		DZA65_RS13545	0.78	+1.1
2,909,388	+		DZA65_RS13545	0.78	-0.0
2,909,389	-		DZA65_RS13545	0.79	+1.1
2,909,389	-		DZA65_RS13545	0.79	+1.0
2,909,389	-		DZA65_RS13545	0.79	+0.5
2,909,490	-				-0.2
2,909,535	+				-0.6
2,909,535	+				+0.6
2,909,563	+				+1.6
2,909,563	+				+1.4
2,909,563	+				+2.7
2,909,563	+				+0.5
2,909,563	+				+1.6
2,909,563	+				-1.1
2,909,563	+				+0.3
2,909,563	+				-0.2
2,909,563	+				-2.6
2,909,563	+				+1.3
2,909,564	-				+0.5
2,909,564	-				-0.6
2,909,564	-				+0.2
2,909,564	-				+0.6
2,909,564	-				-0.1
2,909,564	-				-1.1
2,909,564	-				-2.4
2,909,564	-				-1.3
2,909,564	-				+0.4
2,909,564	-				+0.4
2,909,564	-				+0.3
2,909,564	-				-1.8
2,909,564	-				-0.1
2,909,564	-				-0.9
2,909,564	-				+2.8
2,909,564	-				+0.4
2,909,564	-				+0.5
2,909,580	+				+0.4
2,909,580	+				+0.9
2,909,581	-				+0.6
2,909,581	-				-1.4
2,909,584	+				+0.2
2,909,592	+				-0.1
2,909,592	+				-1.1
2,909,592	+				+0.0
2,909,592	+				-1.1
2,909,592	+				-0.2
2,909,593	-				+0.2
2,909,593	-				-0.2
2,909,593	-				+0.5
2,909,593	-				-2.3
2,909,595	-				-0.5
2,909,604	-				+1.1
2,909,604	-				+1.7
2,909,604	-				-2.3
2,909,604	-				+1.5
2,909,656	-				+0.7
2,909,656	-				+0.0
2,909,656	-				-1.5
2,909,656	-				+0.9
2,909,656	-				-1.1
2,909,660	-				-1.8
2,909,660	-				-2.1
2,909,660	-				+1.4
2,909,660	-				+0.6
2,909,660	-				-0.8