Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12715

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,719,350	+				-1.6
2,719,354	+				+0.1
2,719,365	-				-0.2
2,719,369	-				+1.3
2,719,405	+				-0.8
2,719,408	+				-0.4
2,719,408	+				+2.3
2,719,409	-				+0.1
2,719,411	+				+1.1
2,719,412	-				+0.6
2,719,424	+				-1.7
2,719,425	-				+1.9
2,719,443	-				+0.4
2,719,443	-				-1.4
2,719,443	-				-0.0
2,719,456	+				+0.7
2,719,457	-				+1.9
2,719,460	+				+0.1
2,719,498	-				+2.5
2,719,511	-				+0.7
2,719,532	+				+0.8
2,719,532	+				-0.9
2,719,532	+				-0.5
2,719,533	-				+1.4
2,719,533	-				-1.3
2,719,533	-				+0.5
2,719,533	-				-0.3
2,719,540	-				+1.5
2,719,540	-				+0.5
2,719,577	+				+0.3
2,719,577	+				-0.3
2,719,577	+				-3.1
2,719,578	-		DZA65_RS12710	0.10	-0.0
2,719,578	-		DZA65_RS12710	0.10	+0.4
2,719,578	-		DZA65_RS12710	0.10	-1.9
2,719,578	-		DZA65_RS12710	0.10	+0.7
2,719,579	+		DZA65_RS12710	0.10	+0.8
2,719,579	+		DZA65_RS12710	0.10	-0.1
2,719,579	+		DZA65_RS12710	0.10	+0.4
2,719,579	+		DZA65_RS12710	0.10	+0.7
2,719,579	+		DZA65_RS12710	0.10	+0.8
2,719,579	+		DZA65_RS12710	0.10	-0.4
2,719,579	+		DZA65_RS12710	0.10	-0.9
2,719,579	+		DZA65_RS12710	0.10	+0.4
2,719,580	-		DZA65_RS12710	0.10	+1.5
2,719,580	-		DZA65_RS12710	0.10	+0.8
2,719,580	-		DZA65_RS12710	0.10	-0.2
2,719,580	-		DZA65_RS12710	0.10	-1.9
2,719,580	-		DZA65_RS12710	0.10	-2.4
2,719,580	-		DZA65_RS12710	0.10	+0.1
2,719,580	-		DZA65_RS12710	0.10	+0.4
2,719,580	-		DZA65_RS12710	0.10	-0.1
2,719,580	-		DZA65_RS12710	0.10	-1.0
2,719,580	-		DZA65_RS12710	0.10	+0.6
2,719,584	+		DZA65_RS12710	0.11	-0.3
2,719,584	+				+1.4
2,719,584	+		DZA65_RS12710	0.11	+2.0
2,719,585	-		DZA65_RS12710	0.11	+1.0
2,719,701	+		DZA65_RS12710	0.28	-1.0
2,719,738	+		DZA65_RS12710	0.33	+0.6
2,719,738	+		DZA65_RS12710	0.33	+0.4
2,719,808	-		DZA65_RS12710	0.44	-0.1
2,719,808	-		DZA65_RS12710	0.44	-0.3
2,720,115	+		DZA65_RS12710	0.88	+0.9
2,720,115	+		DZA65_RS12710	0.88	+0.6
2,720,115	+		DZA65_RS12710	0.88	+1.0
2,720,115	+		DZA65_RS12710	0.88	-1.9
2,720,115	+		DZA65_RS12710	0.88	+0.2
2,720,116	-		DZA65_RS12710	0.88	-1.1
2,720,116	-		DZA65_RS12710	0.88	-0.9
2,720,116	-		DZA65_RS12710	0.88	-1.6
2,720,116	-		DZA65_RS12710	0.88	+0.6
2,720,116	-		DZA65_RS12710	0.88	+0.6
2,720,199	-				-1.6
2,720,199	-				-0.2
2,720,199	-				+1.1
2,720,254	+				+0.2
2,720,254	+				+0.4
2,720,254	+				-0.4
2,720,254	+				+0.4
2,720,254	+				+0.6
2,720,254	+				-0.3
2,720,254	+				+0.5
2,720,254	+				-0.1
2,720,255	-				+0.1
2,720,255	-				-0.3
2,720,255	-				+0.6
2,720,255	-				+0.1
2,720,280	+				+1.2
2,720,280	+				+0.4
2,720,281	-				-0.2
2,720,287	+				-1.1
2,720,288	-				-0.6
2,720,288	-				+0.4
2,720,288	-				+0.6
2,720,392	+				+0.9
2,720,393	-				-1.2
2,720,393	-				+2.1
2,720,393	-				+0.7
2,720,435	+				-0.6
2,720,435	+				+1.1
2,720,435	+				-0.8
2,720,435	+				-0.8
2,720,435	+				+0.8
2,720,435	+				-0.4
2,720,436	-				-0.1
2,720,436	-				+0.1
2,720,436	-				+0.1
2,720,518	+		DZA65_RS12715	0.11	+0.7
2,720,518	+		DZA65_RS12715	0.11	-0.9
2,720,518	+		DZA65_RS12715	0.11	+0.4
2,720,519	-		DZA65_RS12715	0.11	-0.2
2,720,519	-		DZA65_RS12715	0.11	-2.2
2,720,519	-		DZA65_RS12715	0.11	+0.4
2,720,519	-		DZA65_RS12715	0.11	+0.8
2,720,519	-		DZA65_RS12715	0.11	-0.9
2,720,615	+		DZA65_RS12715	0.17	-0.0
2,720,616	-		DZA65_RS12715	0.17	-0.2
2,720,616	-		DZA65_RS12715	0.17	+0.2
2,720,672	+		DZA65_RS12715	0.21	-0.5
2,720,672	+		DZA65_RS12715	0.21	+0.7
2,720,672	+		DZA65_RS12715	0.21	+0.9
2,720,672	+		DZA65_RS12715	0.21	-0.9
2,720,673	-		DZA65_RS12715	0.21	-2.2
2,720,673	-		DZA65_RS12715	0.21	-0.5
2,720,673	-		DZA65_RS12715	0.21	-1.7
2,720,674	+		DZA65_RS12715	0.21	+0.5
2,720,674	+		DZA65_RS12715	0.21	+1.3
2,720,674	+		DZA65_RS12715	0.21	-0.1
2,720,675	-		DZA65_RS12715	0.21	+0.8
2,720,675	-		DZA65_RS12715	0.21	-0.1
2,720,675	-		DZA65_RS12715	0.21	-0.4
2,720,675	-		DZA65_RS12715	0.21	-2.2
2,720,675	-		DZA65_RS12715	0.21	-0.3
2,720,675	-		DZA65_RS12715	0.21	+0.4
2,720,675	-		DZA65_RS12715	0.21	-2.6
2,720,675	-		DZA65_RS12715	0.21	+0.4
2,720,689	+		DZA65_RS12715	0.22	+0.2
2,720,690	-		DZA65_RS12715	0.22	-0.6
2,720,690	-		DZA65_RS12715	0.22	-0.4
2,720,690	-		DZA65_RS12715	0.22	+0.3
2,720,694	-		DZA65_RS12715	0.22	-2.2
2,720,818	+		DZA65_RS12715	0.30	+0.2
2,720,818	+		DZA65_RS12715	0.30	+0.1
2,720,819	-		DZA65_RS12715	0.30	-0.4
2,720,846	+		DZA65_RS12715	0.31	-0.2
2,720,883	+		DZA65_RS12715	0.34	-0.3
2,720,883	+		DZA65_RS12715	0.34	-0.9
2,720,883	+		DZA65_RS12715	0.34	-2.3
2,720,884	-		DZA65_RS12715	0.34	-1.5
2,720,884	-		DZA65_RS12715	0.34	-1.5
2,720,884	-		DZA65_RS12715	0.34	+0.4
2,720,884	-		DZA65_RS12715	0.34	-1.0
2,720,884	-		DZA65_RS12715	0.34	-0.6
2,721,010	+		DZA65_RS12715	0.42	-0.6
2,721,084	-		DZA65_RS12715	0.46	-0.6
2,721,084	-		DZA65_RS12715	0.46	-0.9
2,721,094	+		DZA65_RS12715	0.47	-0.0
2,721,095	-		DZA65_RS12715	0.47	+0.7
2,721,179	-		DZA65_RS12715	0.52	+0.6
2,721,179	-		DZA65_RS12715	0.52	-0.6
2,721,280	+		DZA65_RS12715	0.58	-1.4
2,721,319	+		DZA65_RS12715	0.61	-2.4
2,721,335	-		DZA65_RS12715	0.62	-1.0
2,721,457	-				+2.6
2,721,533	+		DZA65_RS12715	0.74	+2.9
2,721,610	+		DZA65_RS12715	0.79	+0.2
2,721,610	+		DZA65_RS12715	0.79	-2.2
2,721,610	+		DZA65_RS12715	0.79	+0.4
2,721,610	+		DZA65_RS12715	0.79	-0.8
2,721,610	+		DZA65_RS12715	0.79	-0.1
2,721,611	-		DZA65_RS12715	0.79	-0.8
2,721,611	-		DZA65_RS12715	0.79	-1.2
2,721,611	-		DZA65_RS12715	0.79	-1.3
2,721,611	-		DZA65_RS12715	0.79	-1.1
2,721,611	-		DZA65_RS12715	0.79	-0.6
2,721,611	-		DZA65_RS12715	0.79	+0.1
2,721,672	-		DZA65_RS12715	0.83	-2.8
2,721,747	-		DZA65_RS12715	0.88	-1.0
2,721,772	+		DZA65_RS12715	0.89	-0.6
2,721,772	+		DZA65_RS12715	0.89	+2.3
2,721,834	-				-0.4
2,721,867	-				+0.2
2,721,988	+				-2.8
2,721,988	+				-0.4
2,721,989	-				+1.2
2,721,989	-				+0.4
2,721,989	-				+2.2
2,721,992	-				-0.4
2,722,026	-				+0.1
2,722,087	+				+0.2
2,722,087	+				+1.4
2,722,087	+				+1.6
2,722,087	+				-0.4
2,722,087	+				-0.6
2,722,087	+				+0.8
2,722,087	+				-3.3
2,722,087	+				+0.9
2,722,087	+				+1.1
2,722,087	+				+0.8
2,722,087	+				+0.9
2,722,087	+				-0.3
2,722,087	+				+0.8
2,722,087	+				+2.2
2,722,087	+				+0.4
2,722,087	+				-0.9
2,722,087	+				-1.6
2,722,087	+				-1.2
2,722,087	+				-0.8
2,722,087	+				-2.3
2,722,088	-				-0.3
2,722,088	-				-1.6
2,722,088	-				-1.6
2,722,088	-				-0.6
2,722,088	-				-0.4
2,722,088	-				-1.2
2,722,088	-				+0.9
2,722,088	-				-0.2
2,722,088	-				-0.6
2,722,088	-				-0.7
2,722,088	-				+0.1
2,722,088	-				+1.0
2,722,088	-				+0.2
2,722,088	-				+0.4
2,722,088	-				+0.8
2,722,088	-				-0.8
2,722,088	-				-0.6
2,722,088	-				+0.4
2,722,121	-		DZA65_RS12720	0.12	+0.5
2,722,121	-		DZA65_RS12720	0.12	-1.4
2,722,121	-				+1.4
2,722,165	+		DZA65_RS12720	0.19	+0.4
2,722,165	+		DZA65_RS12720	0.19	-2.4
2,722,166	-		DZA65_RS12720	0.19	+0.9
2,722,166	-		DZA65_RS12720	0.19	+0.2
2,722,166	-		DZA65_RS12720	0.19	+2.0
2,722,283	+		DZA65_RS12720	0.36	-0.6
2,722,296	+		DZA65_RS12720	0.38	-1.1
2,722,296	+		DZA65_RS12720	0.38	+0.9
2,722,296	+		DZA65_RS12720	0.38	-0.4
2,722,296	+		DZA65_RS12720	0.38	-2.2
2,722,296	+		DZA65_RS12720	0.38	-1.5
2,722,296	+		DZA65_RS12720	0.38	-1.2
2,722,296	+		DZA65_RS12720	0.38	+0.9
2,722,297	-		DZA65_RS12720	0.38	-0.2
2,722,297	-		DZA65_RS12720	0.38	+0.3
2,722,297	-		DZA65_RS12720	0.38	+0.7
2,722,297	-		DZA65_RS12720	0.38	+2.7
2,722,300	+		DZA65_RS12720	0.38	+0.3
2,722,434	+		DZA65_RS12720	0.58	+1.4
2,722,434	+		DZA65_RS12720	0.58	+0.2
2,722,434	+		DZA65_RS12720	0.58	-0.5
2,722,435	-		DZA65_RS12720	0.58	+1.0
2,722,457	+		DZA65_RS12720	0.61	+1.8
2,722,457	+		DZA65_RS12720	0.61	-0.6
2,722,458	-		DZA65_RS12720	0.62	-1.2
2,722,458	-		DZA65_RS12720	0.62	-2.5
2,722,458	-		DZA65_RS12720	0.62	-0.3
2,722,497	+		DZA65_RS12720	0.67	+0.1
2,722,497	+		DZA65_RS12720	0.67	+0.3
2,722,544	-		DZA65_RS12720	0.74	-1.3
2,722,563	-		DZA65_RS12720	0.77	+1.8
2,722,565	+		DZA65_RS12720	0.77	-1.2
2,722,566	-		DZA65_RS12720	0.77	+0.6
2,722,566	-		DZA65_RS12720	0.77	-1.5
2,722,773	-				+0.8
2,722,811	-				+0.8
2,722,922	+		DZA65_RS12725	0.25	-2.2
2,722,923	-		DZA65_RS12725	0.25	-0.2
2,722,929	+		DZA65_RS12725	0.25	-0.0
2,722,929	+		DZA65_RS12725	0.25	+0.4
2,722,930	-		DZA65_RS12725	0.26	+0.2
2,722,930	-		DZA65_RS12725	0.26	-1.9
2,722,930	-		DZA65_RS12725	0.26	-1.8