Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS12505

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,676,906	+		DZA65_RS12500	0.25	-1.1
2,676,906	+		DZA65_RS12500	0.25	+0.5
2,676,906	+		DZA65_RS12500	0.25	-1.0
2,676,906	+		DZA65_RS12500	0.25	-0.8
2,676,906	+		DZA65_RS12500	0.25	+0.6
2,676,907	-		DZA65_RS12500	0.25	+1.1
2,676,907	-		DZA65_RS12500	0.25	+0.3
2,676,907	-		DZA65_RS12500	0.25	+0.7
2,676,907	-		DZA65_RS12500	0.25	+1.2
2,676,912	-		DZA65_RS12500	0.25	-1.2
2,676,912	-		DZA65_RS12500	0.25	-0.6
2,676,969	+		DZA65_RS12500	0.30	-2.8
2,676,969	+		DZA65_RS12500	0.30	-1.8
2,676,969	+		DZA65_RS12500	0.30	+0.8
2,676,969	+		DZA65_RS12500	0.30	-0.7
2,676,969	+		DZA65_RS12500	0.30	+0.9
2,676,969	+		DZA65_RS12500	0.30	+0.2
2,676,969	+		DZA65_RS12500	0.30	+1.1
2,676,969	+				+0.9
2,676,969	+		DZA65_RS12500	0.30	+0.3
2,676,969	+				-0.2
2,676,970	-		DZA65_RS12500	0.31	-1.8
2,676,970	-		DZA65_RS12500	0.31	-1.6
2,676,970	-		DZA65_RS12500	0.31	-0.9
2,676,970	-		DZA65_RS12500	0.31	+1.4
2,676,970	-		DZA65_RS12500	0.31	+0.0
2,677,019	-		DZA65_RS12500	0.35	-2.9
2,677,171	+		DZA65_RS12500	0.50	-0.0
2,677,172	-		DZA65_RS12500	0.50	-1.6
2,677,187	+		DZA65_RS12500	0.51	-1.9
2,677,188	-		DZA65_RS12500	0.51	+0.7
2,677,188	-		DZA65_RS12500	0.51	-0.6
2,677,241	+		DZA65_RS12500	0.56	+1.2
2,677,253	-		DZA65_RS12500	0.57	+0.2
2,677,295	+		DZA65_RS12500	0.61	-1.9
2,677,295	+		DZA65_RS12500	0.61	+1.8
2,677,295	+		DZA65_RS12500	0.61	+1.1
2,677,420	+		DZA65_RS12500	0.73	-0.6
2,677,420	+		DZA65_RS12500	0.73	+0.6
2,677,420	+		DZA65_RS12500	0.73	+1.4
2,677,420	+		DZA65_RS12500	0.73	+2.2
2,677,420	+		DZA65_RS12500	0.73	-1.5
2,677,420	+		DZA65_RS12500	0.73	+2.1
2,677,420	+		DZA65_RS12500	0.73	+0.2
2,677,421	-		DZA65_RS12500	0.73	+1.2
2,677,421	-		DZA65_RS12500	0.73	-0.0
2,677,421	-		DZA65_RS12500	0.73	+0.9
2,677,421	-		DZA65_RS12500	0.73	-2.1
2,677,421	-		DZA65_RS12500	0.73	-1.5
2,677,425	-		DZA65_RS12500	0.74	-0.1
2,677,425	-		DZA65_RS12500	0.74	+2.3
2,677,475	+		DZA65_RS12500	0.78	-0.0
2,677,475	+		DZA65_RS12500	0.78	-1.8
2,677,475	+		DZA65_RS12500	0.78	+1.1
2,677,475	+		DZA65_RS12500	0.78	-1.9
2,677,475	+		DZA65_RS12500	0.78	+0.2
2,677,475	+		DZA65_RS12500	0.78	-0.3
2,677,476	-		DZA65_RS12500	0.79	+1.1
2,677,476	-		DZA65_RS12500	0.79	+0.1
2,677,559	+		DZA65_RS12500	0.86	-0.5
2,677,559	+		DZA65_RS12500	0.86	-1.2
2,677,559	+		DZA65_RS12500	0.86	-0.8
2,677,559	+		DZA65_RS12500	0.86	-1.6
2,677,560	-		DZA65_RS12500	0.86	-1.8
2,677,560	-		DZA65_RS12500	0.86	+0.5
2,677,560	-		DZA65_RS12500	0.86	-1.9
2,677,560	-		DZA65_RS12500	0.86	+0.2
2,677,560	-		DZA65_RS12500	0.86	-1.1
2,677,673	+				-0.2
2,677,768	+				+1.4
2,677,768	+				-0.9
2,677,804	+				-0.2
2,677,850	+				+1.0
2,677,850	+				+0.2
2,677,850	+				+0.1
2,677,850	+				+1.3
2,677,850	+				-0.6
2,677,850	+				+1.2
2,677,851	-				-0.3
2,677,851	-				-1.0
2,677,851	-				-2.1
2,677,851	-				-1.6
2,677,851	-				-2.2
2,677,851	-				+0.8
2,677,851	-				-1.1
2,677,855	-				-0.3
2,677,855	-				-0.5
2,677,855	-				+0.4
2,677,873	+				+1.8
2,677,874	-				-1.2
2,677,874	-				+1.6
2,677,895	+				+0.5
2,677,896	-				-2.8
2,677,896	-				+1.4
2,677,934	-				-1.2
2,677,934	-				-2.6
2,678,018	+				-1.8
2,678,033	+				-4.4
2,678,137	+		DZA65_RS12505	0.13	-1.9
2,678,137	+		DZA65_RS12505	0.13	-0.9
2,678,171	+		DZA65_RS12505	0.15	-2.2
2,678,172	-		DZA65_RS12505	0.15	-3.1
2,678,223	-		DZA65_RS12505	0.17	-2.2
2,678,224	+		DZA65_RS12505	0.17	-0.6
2,678,225	-		DZA65_RS12505	0.17	-2.4
2,678,225	-				-1.9
2,678,225	-				-2.2
2,678,333	+		DZA65_RS12505	0.23	-1.6
2,678,333	+		DZA65_RS12505	0.23	-2.6
2,678,357	+		DZA65_RS12505	0.24	-3.2
2,678,357	+		DZA65_RS12505	0.24	-1.2
2,678,362	+		DZA65_RS12505	0.24	-1.4
2,678,363	-		DZA65_RS12505	0.24	-0.0
2,678,363	-		DZA65_RS12505	0.24	+1.0
2,678,380	+		DZA65_RS12505	0.25	-3.9
2,678,380	+		DZA65_RS12505	0.25	-2.4
2,678,380	+		DZA65_RS12505	0.25	-2.4
2,678,380	+		DZA65_RS12505	0.25	-2.6
2,678,381	-		DZA65_RS12505	0.25	-2.6
2,678,381	-		DZA65_RS12505	0.25	-3.4
2,678,432	+		DZA65_RS12505	0.28	-2.4
2,678,433	-		DZA65_RS12505	0.28	+0.4
2,678,584	+		DZA65_RS12505	0.35	-1.9
2,678,584	+				-1.6
2,678,587	+		DZA65_RS12505	0.35	-0.8
2,678,587	+		DZA65_RS12505	0.35	+0.1
2,678,588	-		DZA65_RS12505	0.35	-0.3
2,678,588	-		DZA65_RS12505	0.35	+4.7
2,678,800	+		DZA65_RS12505	0.46	-2.4
2,678,800	+				-2.2
2,678,886	-		DZA65_RS12505	0.50	-1.2
2,679,068	+		DZA65_RS12505	0.59	-4.5
2,679,068	+		DZA65_RS12505	0.59	-1.4
2,679,125	-				-0.6
2,679,125	-		DZA65_RS12505	0.62	-2.8
2,679,125	-		DZA65_RS12505	0.62	-1.2
2,679,215	-		DZA65_RS12505	0.66	-2.4
2,679,382	+				-1.6
2,679,550	+		DZA65_RS12505	0.83	-0.2
2,679,550	+		DZA65_RS12505	0.83	-4.5
2,679,551	-		DZA65_RS12505	0.83	-1.2
2,679,560	-		DZA65_RS12505	0.83	-3.5
2,679,968	-				+0.4
2,680,066	-		DZA65_RS12510	0.21	-1.2
2,680,659	-				+0.1
2,680,659	-				-0.8
2,680,701	+				+0.7
2,680,702	-				+1.2
2,680,702	-				+0.4
2,680,702	-				+0.4
2,680,703	+				+0.7
2,680,704	-				+0.6
2,680,725	+				-1.4
2,680,726	-				-1.2
2,680,726	-				-0.2
2,680,726	-				+0.8
2,680,726	-				-1.7
2,680,731	-				-0.4
2,680,746	+				-1.9
2,680,746	+				-0.0
2,680,746	+				-0.6
2,680,747	-				+1.2
2,680,747	-				-0.0
2,680,747	-				+0.5
2,680,795	+		DZA65_RS12515	0.13	-1.0
2,680,795	+		DZA65_RS12515	0.13	+1.2
2,680,795	+		DZA65_RS12515	0.13	-0.0
2,680,795	+		DZA65_RS12515	0.13	+0.4
2,680,795	+		DZA65_RS12515	0.13	-1.2