Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11705

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,497,271	+				-0.1
2,497,271	+				+0.6
2,497,271	+				-2.7
2,497,272	-				+1.9
2,497,272	-				-0.7
2,497,277	+				+1.9
2,497,305	+				+0.5
2,497,305	+				-0.4
2,497,306	-				+1.2
2,497,306	-				+1.0
2,497,306	-				-1.6
2,497,306	-				-1.1
2,497,306	-				-0.9
2,497,356	+				-0.3
2,497,356	+				+0.3
2,497,357	-				-1.8
2,497,391	+				-0.1
2,497,392	-		DZA65_RS11700	0.10	-0.1
2,497,392	-		DZA65_RS11700	0.10	-1.3
2,497,405	+				+0.3
2,497,405	+		DZA65_RS11700	0.12	-0.1
2,497,406	-		DZA65_RS11700	0.12	+1.3
2,497,415	-		DZA65_RS11700	0.13	-0.3
2,497,490	+		DZA65_RS11700	0.21	+0.3
2,497,490	+		DZA65_RS11700	0.21	-0.7
2,497,534	+		DZA65_RS11700	0.27	-1.8
2,497,535	-		DZA65_RS11700	0.27	+0.5
2,497,548	+		DZA65_RS11700	0.28	+1.5
2,497,549	-		DZA65_RS11700	0.28	-1.3
2,497,568	+		DZA65_RS11700	0.31	+0.3
2,497,569	-		DZA65_RS11700	0.31	-0.7
2,497,569	-		DZA65_RS11700	0.31	+0.2
2,497,579	+		DZA65_RS11700	0.32	+0.3
2,497,579	+		DZA65_RS11700	0.32	-1.6
2,497,580	-		DZA65_RS11700	0.32	-0.7
2,497,580	-		DZA65_RS11700	0.32	-0.5
2,497,580	-		DZA65_RS11700	0.32	+1.6
2,497,580	-		DZA65_RS11700	0.32	+1.3
2,497,580	-		DZA65_RS11700	0.32	+0.4
2,497,713	+		DZA65_RS11700	0.47	-0.7
2,497,713	+		DZA65_RS11700	0.47	-2.3
2,497,713	+		DZA65_RS11700	0.47	-0.9
2,497,713	+		DZA65_RS11700	0.47	-0.3
2,497,714	-		DZA65_RS11700	0.48	-1.7
2,497,714	-		DZA65_RS11700	0.48	+0.1
2,497,716	+		DZA65_RS11700	0.48	-0.2
2,497,716	+		DZA65_RS11700	0.48	+0.4
2,497,717	-		DZA65_RS11700	0.48	+2.1
2,497,717	-		DZA65_RS11700	0.48	-1.6
2,497,758	+		DZA65_RS11700	0.53	+0.5
2,497,758	+		DZA65_RS11700	0.53	-0.9
2,497,758	+		DZA65_RS11700	0.53	-2.1
2,497,759	-		DZA65_RS11700	0.53	+2.3
2,497,759	-		DZA65_RS11700	0.53	-1.7
2,497,759	-		DZA65_RS11700	0.53	-2.7
2,497,809	+		DZA65_RS11700	0.59	-1.7
2,497,871	+		DZA65_RS11700	0.66	+0.3
2,497,872	-		DZA65_RS11700	0.66	+0.7
2,497,924	+		DZA65_RS11700	0.72	+0.5
2,497,924	+		DZA65_RS11700	0.72	+0.2
2,497,924	+		DZA65_RS11700	0.72	-0.4
2,497,924	+		DZA65_RS11700	0.72	-0.1
2,497,924	+		DZA65_RS11700	0.72	-1.6
2,497,924	+		DZA65_RS11700	0.72	-0.5
2,497,925	-		DZA65_RS11700	0.72	-0.4
2,498,011	+		DZA65_RS11700	0.82	+0.8
2,498,071	+		DZA65_RS11700	0.89	-1.8
2,498,071	+		DZA65_RS11700	0.89	-0.5
2,498,072	-		DZA65_RS11700	0.89	+1.2
2,498,080	+				-0.3
2,498,081	-				-0.3
2,498,083	+				-0.9
2,498,083	+				+1.0
2,498,084	-				-2.0
2,498,084	-				-1.3
2,498,084	-				-0.3
2,498,145	-				-2.3
2,498,159	+				+0.7
2,498,160	-				+0.4
2,498,220	+				-0.7
2,498,274	+		DZA65_RS11705	0.12	+1.3
2,498,275	-		DZA65_RS11705	0.12	+0.4
2,498,276	+		DZA65_RS11705	0.12	-0.3
2,498,276	+		DZA65_RS11705	0.12	+0.5
2,498,276	+		DZA65_RS11705	0.12	+0.0
2,498,276	+				-0.7
2,498,276	+		DZA65_RS11705	0.12	+0.2
2,498,276	+		DZA65_RS11705	0.12	+2.9
2,498,277	-		DZA65_RS11705	0.12	-0.7
2,498,277	-		DZA65_RS11705	0.12	+0.9
2,498,277	-		DZA65_RS11705	0.12	-1.7
2,498,277	-		DZA65_RS11705	0.12	+0.1
2,498,277	-		DZA65_RS11705	0.12	-2.8
2,498,301	+		DZA65_RS11705	0.17	+1.3
2,498,302	-		DZA65_RS11705	0.17	+0.8
2,498,302	-		DZA65_RS11705	0.17	-0.7
2,498,304	+		DZA65_RS11705	0.17	-0.9
2,498,305	-		DZA65_RS11705	0.17	+1.4
2,498,305	-		DZA65_RS11705	0.17	+0.3
2,498,474	+		DZA65_RS11705	0.48	+0.3
2,498,565	+		DZA65_RS11705	0.65	+1.3
2,498,619	+		DZA65_RS11705	0.75	+2.2
2,498,620	-		DZA65_RS11705	0.75	-0.7
2,498,652	+		DZA65_RS11705	0.81	-2.0
2,498,652	+		DZA65_RS11705	0.81	+2.3
2,498,652	+				-0.1
2,498,653	-		DZA65_RS11705	0.81	+0.4
2,498,670	+		DZA65_RS11705	0.84	+0.5
2,498,751	-				-1.1
2,498,751	-				+0.8
2,498,812	-				-0.8
2,498,812	-				-0.2
2,498,812	-				+1.5
2,498,819	+				+0.7
2,498,820	-				-2.1
2,498,829	+				-0.7
2,498,830	-				+0.0
2,498,849	+				-0.3
2,498,850	-				+0.1
2,498,931	+				+0.6
2,498,932	-				+0.4
2,498,936	+				-2.5
2,498,936	+				+0.5
2,498,936	+				+0.0
2,498,936	+				+0.9
2,498,936	+				-0.9
2,498,936	+				-2.0
2,498,937	-				+0.5
2,498,937	-				+1.7
2,498,937	-				-1.0
2,498,937	-				-1.7
2,498,937	-				-0.2
2,498,938	+				-0.7
2,498,938	+				-3.4
2,498,938	+				+3.3
2,498,938	+				+1.5
2,498,938	+				-1.3
2,498,938	+				-1.5
2,498,938	+				-0.7
2,498,939	-				-0.4
2,498,939	-				-1.3
2,498,939	-				+0.5
2,498,939	-				-1.5
2,498,939	-				-1.8
2,498,939	-				+1.1
2,498,939	-				+0.5
2,498,940	+				-0.3
2,498,940	+				-0.7
2,498,940	+				-0.9
2,498,940	+				-1.3
2,498,940	+				+0.6
2,498,940	+				+1.3
2,498,940	+				-0.8
2,498,940	+				-0.2
2,498,941	-				-1.7
2,498,941	-				-0.7
2,498,941	-				+1.1
2,498,941	-				-1.8
2,498,941	-				+1.3
2,498,941	-				-2.7
2,498,941	-				-0.3
2,498,941	-				-1.5
2,498,952	-				-0.0
2,498,998	-				-1.2
2,498,998	-				-1.0
2,498,998	-				-0.8
2,499,000	+				-0.7
2,499,001	-				+0.6
2,499,059	+		DZA65_RS11710	0.14	-1.6
2,499,059	+		DZA65_RS11710	0.14	-2.7
2,499,060	-		DZA65_RS11710	0.14	-0.1
2,499,108	-		DZA65_RS11710	0.29	+0.9
2,499,109	+		DZA65_RS11710	0.29	+0.1
2,499,109	+		DZA65_RS11710	0.29	-0.1
2,499,109	+		DZA65_RS11710	0.29	-1.2
2,499,109	+		DZA65_RS11710	0.29	-0.0
2,499,109	+		DZA65_RS11710	0.29	+0.8
2,499,109	+		DZA65_RS11710	0.29	+0.3
2,499,109	+		DZA65_RS11710	0.29	+0.4
2,499,110	-		DZA65_RS11710	0.29	-0.3
2,499,110	-		DZA65_RS11710	0.29	-0.9
2,499,110	-		DZA65_RS11710	0.29	-3.0
2,499,110	-		DZA65_RS11710	0.29	+0.5
2,499,110	-		DZA65_RS11710	0.29	-0.6
2,499,110	-		DZA65_RS11710	0.29	+0.9
2,499,110	-		DZA65_RS11710	0.29	-0.1
2,499,110	-		DZA65_RS11710	0.29	+0.5
2,499,178	+		DZA65_RS11710	0.50	+0.1
2,499,179	-		DZA65_RS11710	0.50	-2.3
2,499,179	-		DZA65_RS11710	0.50	-1.0
2,499,179	-		DZA65_RS11710	0.50	-1.0
2,499,179	-		DZA65_RS11710	0.50	-0.1
2,499,179	-		DZA65_RS11710	0.50	+0.4
2,499,215	+		DZA65_RS11710	0.61	-0.8
2,499,256	-		DZA65_RS11710	0.73	+0.6
2,499,256	-		DZA65_RS11710	0.73	-3.6
2,499,256	-		DZA65_RS11710	0.73	-1.3
2,499,330	-				+0.0
2,499,334	+				+0.3
2,499,335	-				-1.6
2,499,335	-				-2.3
2,499,355	+				-1.0
2,499,363	+				-1.4
2,499,363	+				-0.4
2,499,364	-				-0.1
2,499,364	-				-0.9
2,499,393	-				+0.9
2,499,405	-				-1.0
2,499,405	-				+0.4
2,499,408	+				-1.3
2,499,409	-				+1.3
2,499,409	-				-1.3
2,499,419	+				-1.7
2,499,419	+				-1.2
2,499,420	-				-1.1
2,499,423	-				+0.3
2,499,423	-				+0.2
2,499,445	+				+1.1
2,499,446	-				-0.3
2,499,450	+				+0.6
2,499,527	+				+0.1
2,499,527	+				-1.3
2,499,528	-				-0.8
2,499,528	-				-1.1
2,499,528	-				-0.7
2,499,622	+				+1.8
2,499,623	-				-3.1
2,499,664	+				-2.7
2,499,665	-				-2.0