Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS11130

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
2,358,033	+		DZA65_RS11125	0.30	-0.5
2,358,164	+		DZA65_RS11125	0.39	+0.3
2,358,267	+		DZA65_RS11125	0.47	-1.1
2,358,325	-		DZA65_RS11125	0.51	+1.0
2,358,338	-		DZA65_RS11125	0.52	+1.8
2,358,653	+		DZA65_RS11125	0.74	-0.0
2,358,708	-		DZA65_RS11125	0.78	-0.1
2,358,708	-		DZA65_RS11125	0.78	-0.9
2,358,865	+		DZA65_RS11125	0.89	+0.3
2,358,944	-				+0.9
2,359,016	+				-0.3
2,359,016	+				+2.8
2,359,016	+				-2.0
2,359,016	+				+1.1
2,359,016	+				-1.7
2,359,016	+				+0.2
2,359,016	+				-0.1
2,359,016	+				-0.1
2,359,016	+				-0.1
2,359,016	+				-1.3
2,359,016	+				-1.8
2,359,016	+				+1.3
2,359,016	+				-0.7
2,359,016	+				+1.1
2,359,016	+				-0.7
2,359,017	-				+0.5
2,359,017	-				-0.7
2,359,017	-				+1.7
2,359,017	-				-0.5
2,359,017	-				-2.0
2,359,017	-				-0.3
2,359,017	-				+0.2
2,359,017	-				-0.7
2,359,017	-				+0.6
2,359,017	-				+1.5
2,359,017	-				+0.8
2,359,017	-				-2.3
2,359,017	-				-0.4
2,359,017	-				+1.0
2,359,017	-				-0.2
2,359,017	-				-0.5
2,359,017	-				+0.5
2,359,017	-				-0.3
2,359,017	-				-0.3
2,359,017	-				+1.1
2,359,017	-				+0.7
2,359,017	-				-0.5
2,359,017	-				-1.5
2,359,017	-				+0.4
2,359,018	+				+1.6
2,359,018	+				-2.0
2,359,018	+				-0.3
2,359,018	+				+1.3
2,359,018	+				-2.0
2,359,019	-				-0.4
2,359,019	-				-0.5
2,359,019	-				+0.8
2,359,019	-				+0.2
2,359,034	+				+4.3
2,359,035	-				-0.9
2,359,113	-		DZA65_RS11130	0.11	+0.2
2,359,156	+		DZA65_RS11130	0.15	+1.4
2,359,157	-		DZA65_RS11130	0.15	+1.0
2,359,157	-		DZA65_RS11130	0.15	+0.5
2,359,184	+		DZA65_RS11130	0.18	+0.6
2,359,285	+		DZA65_RS11130	0.29	-2.3
2,359,286	-		DZA65_RS11130	0.29	-0.7
2,359,286	-		DZA65_RS11130	0.29	-0.7
2,359,294	+		DZA65_RS11130	0.30	+0.9
2,359,330	-		DZA65_RS11130	0.34	-0.7
2,359,334	+		DZA65_RS11130	0.34	-0.2
2,359,335	-		DZA65_RS11130	0.35	+0.6
2,359,335	-		DZA65_RS11130	0.35	+1.0
2,359,420	-		DZA65_RS11130	0.44	-0.1
2,359,501	+		DZA65_RS11130	0.52	-0.4
2,359,501	+		DZA65_RS11130	0.52	+0.6
2,359,501	+		DZA65_RS11130	0.52	+0.0
2,359,509	+		DZA65_RS11130	0.53	+0.0
2,359,510	-		DZA65_RS11130	0.53	+0.3
2,359,557	+		DZA65_RS11130	0.58	-0.4
2,359,558	-		DZA65_RS11130	0.59	+2.0
2,359,604	-		DZA65_RS11130	0.64	+0.6
2,359,604	-		DZA65_RS11130	0.64	+0.9
2,359,618	+		DZA65_RS11130	0.65	+0.4
2,359,618	+		DZA65_RS11130	0.65	+1.3
2,359,618	+		DZA65_RS11130	0.65	+0.1
2,359,619	-		DZA65_RS11130	0.65	-1.7
2,359,619	-		DZA65_RS11130	0.65	+2.4
2,359,622	+		DZA65_RS11130	0.65	-2.5
2,359,622	+		DZA65_RS11130	0.65	-2.3
2,359,623	-		DZA65_RS11130	0.66	+0.6
2,359,623	-		DZA65_RS11130	0.66	+0.2
2,359,776	+		DZA65_RS11130	0.82	+1.4
2,359,776	+		DZA65_RS11130	0.82	-0.3
2,359,776	+		DZA65_RS11130	0.82	+0.9
2,359,776	+		DZA65_RS11130	0.82	+2.7
2,359,776	+		DZA65_RS11130	0.82	-2.5
2,359,777	-		DZA65_RS11130	0.82	+0.0
2,359,777	-		DZA65_RS11130	0.82	+0.6
2,359,777	-		DZA65_RS11130	0.82	-0.3
2,359,915	-				+0.3
2,359,931	+				+0.1
2,359,932	-				+1.3
2,359,932	-				-0.9
2,359,932	-				-3.5
2,359,942	+				+0.9
2,359,942	+				+0.8
2,359,942	+				-0.3
2,359,942	+				+1.0
2,359,942	+				-3.3
2,359,942	+				+1.0
2,359,942	+				+1.3
2,359,943	-				+0.6
2,359,943	-				+0.1
2,359,943	-				+0.8
2,359,971	-				+1.8
2,359,974	+				+0.3
2,359,974	+				-2.0
2,359,974	+				-1.2
2,359,974	+				-0.4
2,359,974	+				-1.7
2,359,974	+				+0.9
2,359,975	-				-1.8
2,359,975	-				-0.7
2,359,975	-				-0.9
2,359,975	-				+1.1
2,359,975	-				-0.4
2,359,975	-				-1.3
2,359,975	-				-2.3
2,359,979	+				-0.7
2,359,979	+				+1.1
2,359,980	-				-0.2
2,359,980	-				+0.3
2,359,980	-				+1.7
2,359,985	-				-1.0
2,360,096	+				-0.1
2,360,096	+				+0.8
2,360,096	+				-0.7
2,360,097	-				+0.1
2,360,097	-				-0.6
2,360,099	+				-0.1
2,360,099	+				-0.4
2,360,100	-				-0.7
2,360,136	-				-1.3
2,360,147	+				+0.8
2,360,147	+				+0.9
2,360,148	-				-2.7
2,360,258	+				-2.3
2,360,286	+				+0.9
2,360,286	+				-2.0
2,360,287	-				-0.6
2,360,287	-				-2.7
2,360,287	-				-0.3
2,360,309	+		DZA65_RS11135	0.12	-0.7
2,360,310	-		DZA65_RS11135	0.12	+3.7
2,360,310	-		DZA65_RS11135	0.12	-0.4
2,360,312	+		DZA65_RS11135	0.12	+1.4
2,360,312	+		DZA65_RS11135	0.12	-1.3
2,360,313	-		DZA65_RS11135	0.12	-0.9
2,360,313	-		DZA65_RS11135	0.12	-0.5
2,360,313	-		DZA65_RS11135	0.12	+1.0
2,360,324	+		DZA65_RS11135	0.13	+0.9
2,360,325	-		DZA65_RS11135	0.13	-0.5
2,360,555	+		DZA65_RS11135	0.31	-0.3
2,360,555	+		DZA65_RS11135	0.31	+0.0
2,360,555	+		DZA65_RS11135	0.31	-2.8
2,360,555	+		DZA65_RS11135	0.31	-0.3
2,360,570	+		DZA65_RS11135	0.32	+0.0
2,360,591	-		DZA65_RS11135	0.34	-2.5
2,360,612	+		DZA65_RS11135	0.36	+1.0
2,360,612	+		DZA65_RS11135	0.36	+0.3
2,360,612	+		DZA65_RS11135	0.36	-0.3
2,360,612	+		DZA65_RS11135	0.36	-0.3
2,360,612	+		DZA65_RS11135	0.36	-0.2
2,360,612	+		DZA65_RS11135	0.36	+0.0
2,360,613	-				+0.3
2,360,613	-		DZA65_RS11135	0.36	+0.9
2,360,613	-		DZA65_RS11135	0.36	+0.3
2,360,642	+		DZA65_RS11135	0.38	+0.7
2,360,642	+		DZA65_RS11135	0.38	+0.1
2,360,642	+		DZA65_RS11135	0.38	-1.0
2,360,643	-		DZA65_RS11135	0.38	-0.3
2,360,643	-		DZA65_RS11135	0.38	-0.3
2,360,643	-		DZA65_RS11135	0.38	-1.1
2,360,643	-		DZA65_RS11135	0.38	+0.3
2,360,643	-		DZA65_RS11135	0.38	-1.1
2,360,696	-		DZA65_RS11135	0.43	+1.9
2,360,910	+		DZA65_RS11135	0.60	-1.7
2,360,910	+		DZA65_RS11135	0.60	-0.1
2,360,910	+		DZA65_RS11135	0.60	+0.3
2,360,910	+		DZA65_RS11135	0.60	-0.9
2,360,927	+		DZA65_RS11135	0.61	-2.1
2,360,927	+		DZA65_RS11135	0.61	-2.7
2,360,927	+		DZA65_RS11135	0.61	-0.2
2,360,927	+		DZA65_RS11135	0.61	-0.3
2,360,927	+		DZA65_RS11135	0.61	-0.1
2,360,927	+		DZA65_RS11135	0.61	+0.1
2,360,927	+		DZA65_RS11135	0.61	-0.9
2,360,927	+		DZA65_RS11135	0.61	-1.4
2,360,927	+		DZA65_RS11135	0.61	+1.1
2,360,927	+		DZA65_RS11135	0.61	-2.3
2,360,927	+		DZA65_RS11135	0.61	+0.1
2,360,927	+		DZA65_RS11135	0.61	+1.3
2,360,927	+		DZA65_RS11135	0.61	-0.2
2,360,927	+		DZA65_RS11135	0.61	-0.9
2,360,927	+		DZA65_RS11135	0.61	-0.2
2,360,927	+		DZA65_RS11135	0.61	+0.9
2,360,928	-		DZA65_RS11135	0.61	-0.1
2,360,928	-		DZA65_RS11135	0.61	+0.7
2,360,928	-		DZA65_RS11135	0.61	+1.1
2,360,928	-		DZA65_RS11135	0.61	-2.0
2,360,928	-		DZA65_RS11135	0.61	-0.3
2,360,928	-		DZA65_RS11135	0.61	-1.9
2,360,928	-		DZA65_RS11135	0.61	-1.9
2,360,928	-		DZA65_RS11135	0.61	-2.8
2,360,928	-		DZA65_RS11135	0.61	+0.5
2,360,928	-		DZA65_RS11135	0.61	-0.8
2,360,929	+		DZA65_RS11135	0.61	+0.1
2,360,929	+		DZA65_RS11135	0.61	-0.3
2,360,929	+		DZA65_RS11135	0.61	+0.8
2,360,930	-		DZA65_RS11135	0.61	-0.8