Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS08835 and DZA65_RS08840 overlap by 1 nucleotides DZA65_RS08840 and DZA65_RS08845 are separated by 23 nucleotides DZA65_RS08845 and DZA65_RS08850 are separated by 138 nucleotides DZA65_RS08850 and DZA65_RS08855 are separated by 76 nucleotides
DZA65_RS08835: DZA65_RS08835 - type VI secretion system PAAR protein, at 1,866,464 to 1,866,988
_RS08835
DZA65_RS08840: DZA65_RS08840 - hypothetical protein, at 1,866,988 to 1,867,863
_RS08840
DZA65_RS08845: DZA65_RS08845 - hypothetical protein, at 1,867,887 to 1,868,291
_RS08845
DZA65_RS08850: DZA65_RS08850 - RHS repeat protein, at 1,868,430 to 1,869,023
_RS08850
DZA65_RS08855: DZA65_RS08855 - hypothetical protein, at 1,869,100 to 1,869,318
_RS08855
Position (kb) 1867
1868
1869 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 1866.921 kb on + strand, within DZA65_RS08835 at 1866.921 kb on + strand, within DZA65_RS08835 at 1866.921 kb on + strand, within DZA65_RS08835 at 1866.922 kb on - strand, within DZA65_RS08835 at 1866.922 kb on - strand, within DZA65_RS08835 at 1866.930 kb on + strand, within DZA65_RS08835 at 1866.930 kb on + strand, within DZA65_RS08835 at 1866.956 kb on + strand at 1866.956 kb on + strand at 1866.956 kb on + strand at 1866.956 kb on + strand at 1866.956 kb on + strand at 1866.956 kb on + strand at 1866.957 kb on - strand at 1866.957 kb on - strand at 1866.957 kb on - strand at 1866.957 kb on - strand at 1866.957 kb on - strand at 1866.976 kb on - strand at 1866.976 kb on - strand at 1867.006 kb on - strand at 1867.089 kb on + strand, within DZA65_RS08840 at 1867.135 kb on - strand, within DZA65_RS08840 at 1867.185 kb on + strand, within DZA65_RS08840 at 1867.185 kb on + strand, within DZA65_RS08840 at 1867.230 kb on + strand, within DZA65_RS08840 at 1867.231 kb on - strand, within DZA65_RS08840 at 1867.231 kb on - strand, within DZA65_RS08840 at 1867.326 kb on - strand, within DZA65_RS08840 at 1867.354 kb on + strand, within DZA65_RS08840 at 1867.374 kb on + strand, within DZA65_RS08840 at 1867.386 kb on + strand, within DZA65_RS08840 at 1867.407 kb on - strand, within DZA65_RS08840 at 1867.430 kb on - strand, within DZA65_RS08840 at 1867.456 kb on - strand, within DZA65_RS08840 at 1867.458 kb on + strand, within DZA65_RS08840 at 1867.461 kb on - strand, within DZA65_RS08840 at 1867.461 kb on - strand, within DZA65_RS08840 at 1867.518 kb on + strand, within DZA65_RS08840 at 1867.518 kb on + strand, within DZA65_RS08840 at 1867.571 kb on - strand, within DZA65_RS08840 at 1867.572 kb on + strand, within DZA65_RS08840 at 1867.581 kb on + strand, within DZA65_RS08840 at 1867.586 kb on - strand, within DZA65_RS08840 at 1867.599 kb on + strand, within DZA65_RS08840 at 1867.611 kb on + strand, within DZA65_RS08840 at 1867.663 kb on - strand, within DZA65_RS08840 at 1867.705 kb on + strand, within DZA65_RS08840 at 1867.705 kb on + strand, within DZA65_RS08840 at 1867.707 kb on + strand, within DZA65_RS08840 at 1867.727 kb on - strand, within DZA65_RS08840 at 1867.748 kb on - strand, within DZA65_RS08840 at 1867.961 kb on + strand, within DZA65_RS08845 at 1868.034 kb on + strand, within DZA65_RS08845 at 1868.034 kb on + strand, within DZA65_RS08845 at 1868.047 kb on + strand, within DZA65_RS08845 at 1868.047 kb on + strand, within DZA65_RS08845 at 1868.048 kb on - strand, within DZA65_RS08845 at 1868.068 kb on - strand, within DZA65_RS08845 at 1868.091 kb on - strand, within DZA65_RS08845 at 1868.136 kb on + strand, within DZA65_RS08845 at 1868.276 kb on + strand at 1868.276 kb on + strand at 1868.277 kb on - strand at 1868.277 kb on - strand at 1868.424 kb on + strand at 1868.424 kb on + strand at 1868.424 kb on + strand at 1868.425 kb on - strand at 1868.430 kb on + strand at 1868.430 kb on + strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.431 kb on - strand at 1868.553 kb on + strand, within DZA65_RS08850 at 1868.554 kb on - strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.555 kb on + strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.556 kb on - strand, within DZA65_RS08850 at 1868.569 kb on + strand, within DZA65_RS08850 at 1868.595 kb on + strand, within DZA65_RS08850 at 1868.622 kb on - strand, within DZA65_RS08850 at 1868.631 kb on + strand, within DZA65_RS08850 at 1868.631 kb on + strand, within DZA65_RS08850 at 1868.632 kb on - strand, within DZA65_RS08850 at 1868.685 kb on + strand, within DZA65_RS08850 at 1868.685 kb on + strand, within DZA65_RS08850 at 1868.686 kb on - strand, within DZA65_RS08850 at 1868.826 kb on + strand, within DZA65_RS08850 at 1868.916 kb on + strand, within DZA65_RS08850 at 1868.916 kb on + strand, within DZA65_RS08850 at 1868.916 kb on + strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1868.917 kb on - strand, within DZA65_RS08850 at 1869.020 kb on + strand at 1869.020 kb on + strand at 1869.021 kb on - strand at 1869.021 kb on - strand at 1869.021 kb on - strand at 1869.021 kb on - strand at 1869.066 kb on + strand at 1869.197 kb on + strand, within DZA65_RS08855 at 1869.231 kb on - strand, within DZA65_RS08855
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 1,866,921 + DZA65_RS08835 0.87 -0.6 1,866,921 + DZA65_RS08835 0.87 -1.5 1,866,921 + DZA65_RS08835 0.87 -2.0 1,866,922 - DZA65_RS08835 0.87 +0.3 1,866,922 - DZA65_RS08835 0.87 -0.4 1,866,930 + DZA65_RS08835 0.89 +0.3 1,866,930 + DZA65_RS08835 0.89 +1.0 1,866,956 + +1.2 1,866,956 + -0.6 1,866,956 + -0.6 1,866,956 + -2.0 1,866,956 + +1.0 1,866,956 + +0.1 1,866,957 - +1.6 1,866,957 - -1.0 1,866,957 - +0.8 1,866,957 - -1.7 1,866,957 - +1.6 1,866,976 - +1.7 1,866,976 - +2.0 1,867,006 - -0.6 1,867,089 + DZA65_RS08840 0.12 +0.4 1,867,135 - DZA65_RS08840 0.17 -2.7 1,867,185 + DZA65_RS08840 0.22 +1.4 1,867,185 + DZA65_RS08840 0.22 -0.1 1,867,230 + DZA65_RS08840 0.28 +3.1 1,867,231 - DZA65_RS08840 0.28 +0.4 1,867,231 - DZA65_RS08840 0.28 +1.2 1,867,326 - DZA65_RS08840 0.39 +3.6 1,867,354 + DZA65_RS08840 0.42 -0.0 1,867,374 + DZA65_RS08840 0.44 -0.3 1,867,386 + DZA65_RS08840 0.45 -3.0 1,867,407 - DZA65_RS08840 0.48 +0.6 1,867,430 - DZA65_RS08840 0.50 -0.4 1,867,456 - DZA65_RS08840 0.53 -0.3 1,867,458 + DZA65_RS08840 0.54 -1.0 1,867,461 - DZA65_RS08840 0.54 +0.7 1,867,461 - DZA65_RS08840 0.54 +0.0 1,867,518 + DZA65_RS08840 0.61 -0.2 1,867,518 + DZA65_RS08840 0.61 +0.2 1,867,571 - DZA65_RS08840 0.67 +0.7 1,867,572 + DZA65_RS08840 0.67 +0.1 1,867,581 + DZA65_RS08840 0.68 -1.2 1,867,586 - DZA65_RS08840 0.68 +0.5 1,867,599 + DZA65_RS08840 0.70 +0.1 1,867,611 + DZA65_RS08840 0.71 -2.2 1,867,663 - DZA65_RS08840 0.77 -0.5 1,867,705 + DZA65_RS08840 0.82 -0.8 1,867,705 + DZA65_RS08840 0.82 -0.4 1,867,707 + DZA65_RS08840 0.82 +0.4 1,867,727 - DZA65_RS08840 0.84 +0.8 1,867,748 - DZA65_RS08840 0.87 +0.6 1,867,961 + DZA65_RS08845 0.18 +0.3 1,868,034 + DZA65_RS08845 0.36 -1.9 1,868,034 + DZA65_RS08845 0.36 +0.4 1,868,047 + DZA65_RS08845 0.40 -1.2 1,868,047 + DZA65_RS08845 0.40 -1.1 1,868,048 - DZA65_RS08845 0.40 -1.7 1,868,068 - DZA65_RS08845 0.45 -1.0 1,868,091 - DZA65_RS08845 0.50 -0.9 1,868,136 + DZA65_RS08845 0.61 +0.6 1,868,276 + +1.2 1,868,276 + -0.1 1,868,277 - -1.2 1,868,277 - -1.0 1,868,424 + -0.4 1,868,424 + +1.0 1,868,424 + -2.6 1,868,425 - +0.3 1,868,430 + -1.4 1,868,430 + +1.2 1,868,431 - +0.7 1,868,431 - -0.4 1,868,431 - -1.4 1,868,431 - +1.4 1,868,431 - -0.5 1,868,431 - -0.6 1,868,431 - -0.3 1,868,431 - +0.1 1,868,431 - -0.1 1,868,553 + DZA65_RS08850 0.21 -1.9 1,868,554 - DZA65_RS08850 0.21 -0.8 1,868,555 + DZA65_RS08850 0.21 +0.8 1,868,555 + DZA65_RS08850 0.21 -1.6 1,868,555 + DZA65_RS08850 0.21 -0.6 1,868,555 + DZA65_RS08850 0.21 -0.6 1,868,555 + DZA65_RS08850 0.21 +1.4 1,868,555 + DZA65_RS08850 0.21 -0.9 1,868,555 + DZA65_RS08850 0.21 -1.3 1,868,555 + DZA65_RS08850 0.21 -0.4 1,868,556 - DZA65_RS08850 0.21 -0.6 1,868,556 - DZA65_RS08850 0.21 +0.2 1,868,556 - DZA65_RS08850 0.21 -0.3 1,868,556 - DZA65_RS08850 0.21 -2.0 1,868,556 - DZA65_RS08850 0.21 -0.6 1,868,569 + DZA65_RS08850 0.23 +1.8 1,868,595 + DZA65_RS08850 0.28 -2.0 1,868,622 - DZA65_RS08850 0.32 +1.2 1,868,631 + DZA65_RS08850 0.34 -2.4 1,868,631 + DZA65_RS08850 0.34 -0.8 1,868,632 - DZA65_RS08850 0.34 +0.7 1,868,685 + DZA65_RS08850 0.43 -1.3 1,868,685 + DZA65_RS08850 0.43 -1.8 1,868,686 - DZA65_RS08850 0.43 +0.3 1,868,826 + DZA65_RS08850 0.67 +2.1 1,868,916 + DZA65_RS08850 0.82 +0.2 1,868,916 + DZA65_RS08850 0.82 +0.7 1,868,916 + DZA65_RS08850 0.82 -1.6 1,868,917 - DZA65_RS08850 0.82 +0.4 1,868,917 - DZA65_RS08850 0.82 -0.6 1,868,917 - DZA65_RS08850 0.82 -3.5 1,868,917 - DZA65_RS08850 0.82 +0.1 1,869,020 + +3.0 1,869,020 + +0.9 1,869,021 - -2.7 1,869,021 - -0.5 1,869,021 - -2.6 1,869,021 - +0.3 1,869,066 + -0.2 1,869,197 + DZA65_RS08855 0.44 +0.6 1,869,231 - DZA65_RS08855 0.60 +0.0
Or see this region's nucleotide sequence