Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08335

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS08330 and DZA65_RS08335 are separated by 353 nucleotidesDZA65_RS08335 and DZA65_RS08340 are separated by 369 nucleotides DZA65_RS08330: DZA65_RS08330 - ABC transporter permease subunit, at 1,755,473 to 1,756,132 _RS08330 DZA65_RS08335: DZA65_RS08335 - hypothetical protein, at 1,756,486 to 1,756,899 _RS08335 DZA65_RS08340: DZA65_RS08340 - thioredoxin, at 1,757,269 to 1,759,062 _RS08340 Position (kb) 1756 1757Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 1755.499 kb on + strandat 1755.500 kb on - strandat 1755.527 kb on + strandat 1755.527 kb on + strandat 1755.527 kb on + strandat 1755.527 kb on + strandat 1755.527 kb on + strandat 1755.528 kb on - strandat 1755.528 kb on - strandat 1755.528 kb on - strandat 1755.528 kb on - strandat 1755.528 kb on - strandat 1755.528 kb on - strandat 1755.528 kb on - strandat 1755.528 kb on - strandat 1755.593 kb on - strand, within DZA65_RS08330at 1755.614 kb on - strand, within DZA65_RS08330at 1755.730 kb on + strand, within DZA65_RS08330at 1755.731 kb on - strand, within DZA65_RS08330at 1756.056 kb on + strand, within DZA65_RS08330at 1756.057 kb on - strand, within DZA65_RS08330at 1756.057 kb on - strand, within DZA65_RS08330at 1756.057 kb on - strand, within DZA65_RS08330at 1756.057 kb on - strand, within DZA65_RS08330at 1756.107 kb on + strandat 1756.108 kb on - strandat 1756.197 kb on - strandat 1756.215 kb on - strandat 1756.275 kb on + strandat 1756.285 kb on + strandat 1756.286 kb on - strandat 1756.286 kb on - strandat 1756.312 kb on + strandat 1756.352 kb on + strandat 1756.385 kb on + strandat 1756.422 kb on - strandat 1756.435 kb on + strandat 1756.482 kb on - strandat 1756.722 kb on + strand, within DZA65_RS08335at 1756.723 kb on - strand, within DZA65_RS08335at 1756.809 kb on + strand, within DZA65_RS08335at 1756.842 kb on - strand, within DZA65_RS08335at 1756.845 kb on + strand, within DZA65_RS08335at 1756.845 kb on + strand, within DZA65_RS08335at 1756.925 kb on - strandat 1756.925 kb on - strandat 1756.925 kb on - strandat 1756.985 kb on + strandat 1757.058 kb on - strandat 1757.058 kb on - strandat 1757.112 kb on + strandat 1757.129 kb on + strandat 1757.129 kb on + strandat 1757.129 kb on + strandat 1757.136 kb on + strandat 1757.147 kb on - strandat 1757.154 kb on - strandat 1757.154 kb on - strandat 1757.163 kb on + strandat 1757.164 kb on - strandat 1757.164 kb on - strandat 1757.170 kb on + strandat 1757.180 kb on + strandat 1757.180 kb on + strandat 1757.181 kb on - strandat 1757.181 kb on - strandat 1757.181 kb on - strandat 1757.188 kb on - strandat 1757.188 kb on - strandat 1757.197 kb on + strandat 1757.380 kb on + strandat 1757.381 kb on - strandat 1757.381 kb on - strandat 1757.381 kb on - strandat 1757.426 kb on + strandat 1757.427 kb on - strandat 1757.493 kb on + strand, within DZA65_RS08340at 1757.493 kb on + strand, within DZA65_RS08340at 1757.493 kb on + strand, within DZA65_RS08340at 1757.493 kb on + strand, within DZA65_RS08340at 1757.493 kb on + strand, within DZA65_RS08340at 1757.493 kb on + strand, within DZA65_RS08340at 1757.493 kb on + strand, within DZA65_RS08340at 1757.493 kb on + strand, within DZA65_RS08340at 1757.493 kb on + strand, within DZA65_RS08340at 1757.493 kb on + strand, within DZA65_RS08340at 1757.494 kb on - strand, within DZA65_RS08340at 1757.494 kb on - strand, within DZA65_RS08340at 1757.494 kb on - strand, within DZA65_RS08340at 1757.494 kb on - strand, within DZA65_RS08340at 1757.494 kb on - strand, within DZA65_RS08340at 1757.494 kb on - strand, within DZA65_RS08340at 1757.494 kb on - strand, within DZA65_RS08340at 1757.494 kb on - strand, within DZA65_RS08340at 1757.494 kb on - strand, within DZA65_RS08340at 1757.494 kb on - strand, within DZA65_RS08340at 1757.494 kb on - strand, within DZA65_RS08340at 1757.500 kb on + strand, within DZA65_RS08340at 1757.500 kb on + strand, within DZA65_RS08340at 1757.501 kb on - strand, within DZA65_RS08340at 1757.501 kb on - strand, within DZA65_RS08340at 1757.501 kb on - strand, within DZA65_RS08340at 1757.501 kb on - strand, within DZA65_RS08340at 1757.501 kb on - strand, within DZA65_RS08340at 1757.501 kb on - strand, within DZA65_RS08340at 1757.575 kb on + strand, within DZA65_RS08340at 1757.576 kb on - strand, within DZA65_RS08340at 1757.675 kb on + strand, within DZA65_RS08340at 1757.676 kb on - strand, within DZA65_RS08340at 1757.873 kb on + strand, within DZA65_RS08340at 1757.873 kb on + strand, within DZA65_RS08340at 1757.873 kb on + strand, within DZA65_RS08340at 1757.873 kb on + strand, within DZA65_RS08340at 1757.873 kb on + strand, within DZA65_RS08340at 1757.873 kb on + strand, within DZA65_RS08340at 1757.873 kb on + strand, within DZA65_RS08340at 1757.874 kb on - strand, within DZA65_RS08340at 1757.874 kb on - strand, within DZA65_RS08340at 1757.874 kb on - strand, within DZA65_RS08340at 1757.874 kb on - strand, within DZA65_RS08340at 1757.874 kb on - strand, within DZA65_RS08340at 1757.874 kb on - strand, within DZA65_RS08340at 1757.874 kb on - strand, within DZA65_RS08340at 1757.874 kb on - strand, within DZA65_RS08340at 1757.874 kb on - strand, within DZA65_RS08340at 1757.884 kb on + strand, within DZA65_RS08340at 1757.884 kb on + strand, within DZA65_RS08340at 1757.884 kb on + strand, within DZA65_RS08340at 1757.884 kb on + strand, within DZA65_RS08340at 1757.885 kb on - strand, within DZA65_RS08340at 1757.885 kb on - strand, within DZA65_RS08340at 1757.885 kb on - strand, within DZA65_RS08340at 1757.885 kb on - strand, within DZA65_RS08340at 1757.885 kb on - strand, within DZA65_RS08340

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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1,755,499 + +0.9
1,755,500 - -1.0
1,755,527 + -2.4
1,755,527 + +0.4
1,755,527 + +1.1
1,755,527 + -0.3
1,755,527 + -1.9
1,755,528 - +0.7
1,755,528 - -0.2
1,755,528 - +0.4
1,755,528 - -0.2
1,755,528 - -0.2
1,755,528 - -1.5
1,755,528 - -0.9
1,755,528 - +0.6
1,755,593 - DZA65_RS08330 0.18 -0.9
1,755,614 - DZA65_RS08330 0.21 +1.7
1,755,730 + DZA65_RS08330 0.39 +0.9
1,755,731 - DZA65_RS08330 0.39 -1.3
1,756,056 + DZA65_RS08330 0.88 -1.5
1,756,057 - DZA65_RS08330 0.88 -0.0
1,756,057 - DZA65_RS08330 0.88 +1.1
1,756,057 - DZA65_RS08330 0.88 +1.6
1,756,057 - DZA65_RS08330 0.88 +0.7
1,756,107 + +0.9
1,756,108 - +0.6
1,756,197 - -1.3
1,756,215 - +1.8
1,756,275 + +0.7
1,756,285 + +0.2
1,756,286 - +1.1
1,756,286 - +0.9
1,756,312 + -1.0
1,756,352 + +0.6
1,756,385 + +1.8
1,756,422 - +0.4
1,756,435 + -1.4
1,756,482 - -0.1
1,756,722 + DZA65_RS08335 0.57 +0.2
1,756,723 - DZA65_RS08335 0.57 +0.2
1,756,809 + DZA65_RS08335 0.78 +0.4
1,756,842 - DZA65_RS08335 0.86 -1.7
1,756,845 + DZA65_RS08335 0.87 -0.6
1,756,845 + DZA65_RS08335 0.87 -0.9
1,756,925 - -0.1
1,756,925 - +0.8
1,756,925 - -1.1
1,756,985 + +0.6
1,757,058 - +0.9
1,757,058 - +0.7
1,757,112 + -0.4
1,757,129 + -0.5
1,757,129 + -0.6
1,757,129 + -0.7
1,757,136 + +0.4
1,757,147 - -0.8
1,757,154 - -1.4
1,757,154 - -1.0
1,757,163 + -0.6
1,757,164 - -0.2
1,757,164 - -2.4
1,757,170 + +0.2
1,757,180 + -1.0
1,757,180 + -1.2
1,757,181 - -0.3
1,757,181 - +1.0
1,757,181 - +1.4
1,757,188 - -1.6
1,757,188 - +0.0
1,757,197 + -1.1
1,757,380 + +0.6
1,757,381 - +0.4
1,757,381 - +1.3
1,757,381 - -0.6
1,757,426 + +1.1
1,757,427 - -1.0
1,757,493 + DZA65_RS08340 0.12 -0.6
1,757,493 + DZA65_RS08340 0.12 +0.2
1,757,493 + DZA65_RS08340 0.12 -0.3
1,757,493 + DZA65_RS08340 0.12 -0.4
1,757,493 + DZA65_RS08340 0.12 -2.9
1,757,493 + DZA65_RS08340 0.12 -1.9
1,757,493 + DZA65_RS08340 0.12 +0.1
1,757,493 + DZA65_RS08340 0.12 -2.6
1,757,493 + DZA65_RS08340 0.12 -1.9
1,757,493 + DZA65_RS08340 0.12 +0.6
1,757,494 - DZA65_RS08340 0.13 -2.4
1,757,494 - DZA65_RS08340 0.13 -0.7
1,757,494 - DZA65_RS08340 0.13 -0.3
1,757,494 - DZA65_RS08340 0.13 -2.0
1,757,494 - DZA65_RS08340 0.13 +0.7
1,757,494 - DZA65_RS08340 0.13 -1.7
1,757,494 - DZA65_RS08340 0.13 -1.4
1,757,494 - DZA65_RS08340 0.13 -0.9
1,757,494 - DZA65_RS08340 0.13 -1.4
1,757,494 - DZA65_RS08340 0.13 +0.9
1,757,494 - DZA65_RS08340 0.13 -1.5
1,757,500 + DZA65_RS08340 0.13 -1.0
1,757,500 + DZA65_RS08340 0.13 +1.0
1,757,501 - DZA65_RS08340 0.13 +0.9
1,757,501 - DZA65_RS08340 0.13 +0.8
1,757,501 - DZA65_RS08340 0.13 +0.4
1,757,501 - DZA65_RS08340 0.13 -0.1
1,757,501 - DZA65_RS08340 0.13 -1.1
1,757,501 - DZA65_RS08340 0.13 +1.3
1,757,575 + DZA65_RS08340 0.17 -0.5
1,757,576 - DZA65_RS08340 0.17 -0.6
1,757,675 + DZA65_RS08340 0.23 +0.0
1,757,676 - DZA65_RS08340 0.23 -3.5
1,757,873 + DZA65_RS08340 0.34 +0.8
1,757,873 + DZA65_RS08340 0.34 +0.6
1,757,873 + DZA65_RS08340 0.34 -1.9
1,757,873 + DZA65_RS08340 0.34 -0.0
1,757,873 + DZA65_RS08340 0.34 +0.1
1,757,873 + DZA65_RS08340 0.34 -0.5
1,757,873 + DZA65_RS08340 0.34 -0.9
1,757,874 - DZA65_RS08340 0.34 -0.6
1,757,874 - DZA65_RS08340 0.34 -0.2
1,757,874 - DZA65_RS08340 0.34 +0.7
1,757,874 - DZA65_RS08340 0.34 +0.4
1,757,874 - DZA65_RS08340 0.34 -0.9
1,757,874 - DZA65_RS08340 0.34 +0.7
1,757,874 - DZA65_RS08340 0.34 +2.0
1,757,874 - DZA65_RS08340 0.34 -0.2
1,757,874 - DZA65_RS08340 0.34 +0.3
1,757,884 + DZA65_RS08340 0.34 +0.7
1,757,884 + DZA65_RS08340 0.34 -0.7
1,757,884 + DZA65_RS08340 0.34 -1.0
1,757,884 + DZA65_RS08340 0.34 -0.4
1,757,885 - DZA65_RS08340 0.34 +1.8
1,757,885 - DZA65_RS08340 0.34 -1.9
1,757,885 - DZA65_RS08340 0.34 +2.7
1,757,885 - DZA65_RS08340 0.34 -1.6
1,757,885 - DZA65_RS08340 0.34 -2.4

Or see this region's nucleotide sequence