Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS08205

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Atlantic
				remove
1,716,992	+	DZA65_RS08200	0.38	-0.3
1,717,020	+	DZA65_RS08200	0.40	-1.9
1,717,073	+	DZA65_RS08200	0.44	-1.1
1,717,074	-	DZA65_RS08200	0.44	-0.5
1,717,216	+	DZA65_RS08200	0.56	+0.2
1,717,216	+	DZA65_RS08200	0.56	+0.5
1,717,216	+	DZA65_RS08200	0.56	-0.5
1,717,216	+	DZA65_RS08200	0.56	-0.3
1,717,216	+	DZA65_RS08200	0.56	-0.3
1,717,217	-			+0.5
1,717,217	-	DZA65_RS08200	0.56	+1.0
1,717,240	+	DZA65_RS08200	0.57	+0.6
1,717,240	+	DZA65_RS08200	0.57	+0.7
1,717,240	+	DZA65_RS08200	0.57	+0.3
1,717,240	+	DZA65_RS08200	0.57	-1.5
1,717,241	-	DZA65_RS08200	0.57	+4.3
1,717,241	-	DZA65_RS08200	0.57	-0.4
1,717,241	-	DZA65_RS08200	0.57	+0.3
1,717,241	-	DZA65_RS08200	0.57	+1.5
1,717,241	-	DZA65_RS08200	0.57	+0.2
1,717,241	-	DZA65_RS08200	0.57	-0.5
1,717,241	-	DZA65_RS08200	0.57	-1.5
1,717,276	-	DZA65_RS08200	0.60	+0.5
1,717,276	-	DZA65_RS08200	0.60	-1.7
1,717,390	-	DZA65_RS08200	0.69	-0.8
1,717,428	+	DZA65_RS08200	0.72	-1.7
1,717,428	+	DZA65_RS08200	0.72	+0.5
1,717,429	-	DZA65_RS08200	0.72	-1.1
1,717,540	+	DZA65_RS08200	0.81	-1.3
1,717,540	+	DZA65_RS08200	0.81	+1.1
1,717,540	+	DZA65_RS08200	0.81	+1.3
1,717,541	-	DZA65_RS08200	0.81	-0.7
1,717,541	-	DZA65_RS08200	0.81	+0.3
1,717,541	-	DZA65_RS08200	0.81	+1.9
1,717,582	+	DZA65_RS08200	0.84	+1.0
1,717,582	+	DZA65_RS08200	0.84	+2.5
1,717,582	+	DZA65_RS08200	0.84	+1.2
1,717,582	+	DZA65_RS08200	0.84	+0.9
1,717,582	+	DZA65_RS08200	0.84	+1.1
1,717,582	+	DZA65_RS08200	0.84	-0.9
1,717,583	-	DZA65_RS08200	0.84	-1.5
1,717,583	-	DZA65_RS08200	0.84	-0.2
1,717,651	+	DZA65_RS08200	0.89	-0.5
1,717,678	+			+0.5
1,717,678	+			-0.7
1,717,678	+			-1.4
1,717,679	-			-0.3
1,717,679	-			-1.4
1,717,679	-			-0.5
1,717,679	-			+0.9
1,717,679	-			+1.0
1,717,679	-			+1.9
1,717,729	-			+0.8
1,717,765	+			+0.1
1,717,766	-			+1.1
1,717,766	-			+0.7
1,717,770	+			-0.3
1,717,770	+			+1.0
1,717,771	-			+0.7
1,717,771	-			-0.5
1,717,773	+			+0.6
1,717,773	+			+1.0
1,717,773	+			-0.9
1,717,773	+			+0.7
1,717,773	+			-2.7
1,717,773	+			+0.8
1,717,773	+			-1.7
1,717,773	+			+0.1
1,717,773	+			+2.0
1,717,773	+			+1.5
1,717,773	+			+0.7
1,717,773	+			+0.2
1,717,773	+			-1.5
1,717,773	+			+1.3
1,717,774	-			+1.1
1,717,774	-			+0.9
1,717,774	-			-1.1
1,717,774	-			-1.9
1,717,774	-			-0.9
1,717,774	-			-1.4
1,717,774	-			+0.3
1,717,774	-			+0.6
1,717,774	-			-1.5
1,717,906	+			-1.1
1,717,907	-			+0.4
1,717,934	+			+0.3
1,717,937	+			+0.1
1,717,937	+			+0.6
1,717,937	+			+1.0
1,717,938	-			+0.3
1,717,938	-			-0.2
1,717,938	-			+0.7
1,717,938	-			-2.5
1,717,938	-			+0.3
1,717,938	-			+0.2
1,717,949	+			-1.5
1,717,950	-			+1.1
1,717,950	-			+1.0
1,717,950	-			-0.0
1,717,978	+			-2.0
1,717,979	-			-0.5
1,717,984	+			-0.6
1,717,994	-			+0.7
1,717,994	-			+1.0
1,718,066	-	DZA65_RS08205	0.18	+1.8
1,718,102	+	DZA65_RS08205	0.23	-1.5
1,718,103	-	DZA65_RS08205	0.23	-0.5
1,718,164	+	DZA65_RS08205	0.30	-0.9
1,718,165	-	DZA65_RS08205	0.30	+1.1
1,718,214	+	DZA65_RS08205	0.36	-2.0
1,718,214	+	DZA65_RS08205	0.36	+2.2
1,718,214	+	DZA65_RS08205	0.36	+2.5
1,718,214	+	DZA65_RS08205	0.36	+1.3
1,718,214	+	DZA65_RS08205	0.36	+0.1
1,718,215	-	DZA65_RS08205	0.37	-0.9
1,718,215	-	DZA65_RS08205	0.37	-2.0
1,718,215	-	DZA65_RS08205	0.37	+0.9
1,718,215	-	DZA65_RS08205	0.37	-0.3
1,718,215	-	DZA65_RS08205	0.37	-0.8
1,718,215	-	DZA65_RS08205	0.37	-0.2
1,718,215	-	DZA65_RS08205	0.37	-1.1
1,718,236	-	DZA65_RS08205	0.39	-2.0
1,718,236	-	DZA65_RS08205	0.39	+0.3
1,718,236	-			+0.5
1,718,236	-	DZA65_RS08205	0.39	+1.8
1,718,245	+			+0.9
1,718,245	+	DZA65_RS08205	0.40	+0.5
1,718,245	+	DZA65_RS08205	0.40	-0.7
1,718,245	+	DZA65_RS08205	0.40	-0.0
1,718,246	-	DZA65_RS08205	0.40	-1.9
1,718,260	+	DZA65_RS08205	0.42	-0.0
1,718,260	+	DZA65_RS08205	0.42	-0.8
1,718,260	+	DZA65_RS08205	0.42	+0.7
1,718,261	-	DZA65_RS08205	0.42	+0.6
1,718,261	-	DZA65_RS08205	0.42	+0.3
1,718,261	-	DZA65_RS08205	0.42	+1.7
1,718,261	-	DZA65_RS08205	0.42	-1.9
1,718,261	-	DZA65_RS08205	0.42	-0.3
1,718,261	-	DZA65_RS08205	0.42	-1.5
1,718,278	+	DZA65_RS08205	0.44	+0.1
1,718,278	+	DZA65_RS08205	0.44	-0.6
1,718,278	+	DZA65_RS08205	0.44	-1.5
1,718,359	+	DZA65_RS08205	0.54	-1.3
1,718,442	-	DZA65_RS08205	0.65	-0.5
1,718,442	-	DZA65_RS08205	0.65	+0.7
1,718,442	-	DZA65_RS08205	0.65	-1.5
1,718,442	-	DZA65_RS08205	0.65	-1.9
1,718,470	+	DZA65_RS08205	0.68	-0.3
1,718,470	+	DZA65_RS08205	0.68	-2.1
1,718,470	+	DZA65_RS08205	0.68	+0.8
1,718,471	-	DZA65_RS08205	0.68	-1.3
1,718,473	+	DZA65_RS08205	0.69	-2.1
1,718,474	-	DZA65_RS08205	0.69	-1.8
1,718,474	-	DZA65_RS08205	0.69	+0.5
1,718,474	-	DZA65_RS08205	0.69	-1.2
1,718,474	-	DZA65_RS08205	0.69	-1.5
1,718,474	-	DZA65_RS08205	0.69	-0.6
1,718,474	-	DZA65_RS08205	0.69	-0.9
1,718,477	+	DZA65_RS08205	0.69	-0.7
1,718,477	+	DZA65_RS08205	0.69	-0.4
1,718,477	+	DZA65_RS08205	0.69	+1.1
1,718,477	+	DZA65_RS08205	0.69	-1.5
1,718,478	-	DZA65_RS08205	0.69	-0.5
1,718,478	-	DZA65_RS08205	0.69	-2.5
1,718,478	-	DZA65_RS08205	0.69	-0.3
1,718,495	+	DZA65_RS08205	0.71	-1.1
1,718,496	-	DZA65_RS08205	0.71	-1.5
1,718,561	+	DZA65_RS08205	0.79	+0.3
1,718,562	-	DZA65_RS08205	0.80	+0.7
1,718,562	-	DZA65_RS08205	0.80	-0.5
1,718,562	-	DZA65_RS08205	0.80	-1.4
1,718,574	-	DZA65_RS08205	0.81	+0.9
1,718,587	+	DZA65_RS08205	0.83	-1.0
1,718,587	+	DZA65_RS08205	0.83	-0.3
1,718,588	-	DZA65_RS08205	0.83	+0.8
1,718,588	-	DZA65_RS08205	0.83	+0.6
1,718,656	+			-1.5
1,718,656	+			+1.5
1,718,656	+			+0.0
1,718,681	+			+1.2
1,718,692	+			-1.5
1,718,692	+			-1.7
1,718,692	+			+1.2
1,718,708	+			-0.7
1,718,708	+			+1.5
1,718,708	+			-1.9
1,718,709	-			-0.4
1,718,709	-			-0.3
1,718,709	-			-0.2
1,718,730	+			-0.5
1,718,748	+			+1.0
1,718,749	-			+1.5
1,718,749	-			+0.0
1,718,749	-			-1.5
1,718,749	-			-0.2
1,718,749	-			-0.5
1,718,749	-			+0.6
1,718,749	-			+0.8
1,718,829	+			-2.7
1,718,829	+			-0.8
1,718,829	+			-1.0
1,718,829	+			+0.5
1,718,829	+			+1.2
1,718,829	+			-0.1
1,718,829	+			+3.0
1,718,829	+			-0.3
1,718,829	+			-1.1
1,718,829	+			+0.5
1,718,829	+			-0.6
1,718,829	+			+0.9
1,718,830	-			+2.2
1,718,830	-			+0.0
1,718,830	-			+0.2
1,718,830	-			-0.5
1,718,830	-			-0.3
1,718,830	-			-1.0
1,718,830	-			-0.3
1,718,830	-			-0.7
1,718,830	-			+0.3
1,718,830	-			+3.3
1,718,830	-			-0.5
1,718,830	-			-1.9
1,718,864	-			+2.8
1,718,901	-			+0.4
1,718,930	-			+0.9
1,718,930	-			+1.6
1,718,930	-			+0.1
1,718,930	-			+0.9
1,718,930	-			+1.2
1,718,962	+			-0.9
1,718,962	+			+2.9
1,718,962	+			+0.8
1,718,962	+			-1.0
1,718,963	-			-0.3
1,718,977	+			-0.9
1,718,977	+			-0.4
1,718,978	-			-0.1
1,718,978	-			+1.0
1,718,978	-			+0.3
1,719,063	-			-0.9
1,719,063	-			-1.5
1,719,063	-			-0.9
1,719,063	-			+0.5
1,719,096	-			+0.9
1,719,219	-			-0.9
1,719,242	+			+0.6
1,719,305	+			+0.2
1,719,305	+			-1.1
1,719,306	-			-0.1
1,719,306	-			+0.7
1,719,319	-			-1.1
1,719,319	-			+1.2
1,719,319	-			-1.9
1,719,320	+			-0.5
1,719,320	+			-2.3
1,719,320	+			-0.3
1,719,320	+			-0.0
1,719,444	+			-1.9
1,719,444	+			-1.9
1,719,444	+			-0.9
1,719,445	-			+0.9
1,719,445	-			+0.6
1,719,446	+			-1.7
1,719,446	+			-2.7
1,719,446	+			-0.0
1,719,447	-			+0.5
1,719,447	-			+1.3
1,719,447	-			-2.1
1,719,489	+			+1.8
1,719,490	-			-2.0
1,719,490	-			+1.0
1,719,490	-			-0.3
1,719,490	-			+1.1
1,719,490	-			+1.3
1,719,491	+			-0.5
1,719,491	+			-1.1
1,719,492	-			+0.2
1,719,492	-			-0.0
1,719,492	-			-1.1
1,719,492	-			+0.9
1,719,492	-			-1.9
1,719,538	+			-2.1
1,719,538	+			+0.1
1,719,538	+			+1.9
1,719,539	-			-0.2
1,719,539	-			+0.5
1,719,539	-			+0.8
1,719,704	+			-0.5
1,719,704	+			+1.6
1,719,705	-			+0.4

Or see this region's nucleotide sequence