Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS07525

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,562,036	+		DZA65_RS07515	0.82	+1.1
1,562,036	+		DZA65_RS07515	0.82	+0.2
1,562,036	+		DZA65_RS07515	0.82	-1.3
1,562,212	+				+0.5
1,562,212	+				-1.5
1,562,225	-				+0.1
1,562,256	+				+1.4
1,562,256	+				+0.4
1,562,257	-				+0.5
1,562,257	-				-0.0
1,562,257	-				-1.0
1,562,391	-		DZA65_RS07520	0.19	+0.7
1,562,391	-		DZA65_RS07520	0.19	+0.5
1,562,411	+		DZA65_RS07520	0.22	+3.5
1,562,411	+		DZA65_RS07520	0.22	-0.5
1,562,411	+		DZA65_RS07520	0.22	+1.8
1,562,412	-		DZA65_RS07520	0.22	-2.6
1,562,412	-		DZA65_RS07520	0.22	+3.7
1,562,412	-		DZA65_RS07520	0.22	+1.7
1,562,412	-		DZA65_RS07520	0.22	+0.2
1,562,412	-		DZA65_RS07520	0.22	-0.5
1,562,434	-		DZA65_RS07520	0.26	-0.2
1,562,434	-		DZA65_RS07520	0.26	-2.5
1,562,440	-		DZA65_RS07520	0.27	+0.1
1,562,459	-		DZA65_RS07520	0.29	-1.0
1,562,512	+		DZA65_RS07520	0.37	-0.1
1,562,512	+		DZA65_RS07520	0.37	-0.0
1,562,512	+		DZA65_RS07520	0.37	+0.3
1,562,513	-		DZA65_RS07520	0.37	-0.4
1,562,513	-		DZA65_RS07520	0.37	-0.8
1,562,513	-		DZA65_RS07520	0.37	+0.8
1,562,513	-		DZA65_RS07520	0.37	+1.5
1,562,513	-		DZA65_RS07520	0.37	-0.8
1,562,515	+		DZA65_RS07520	0.37	+1.0
1,562,515	+		DZA65_RS07520	0.37	+1.5
1,562,515	+		DZA65_RS07520	0.37	-0.6
1,562,516	-		DZA65_RS07520	0.38	+0.1
1,562,516	-		DZA65_RS07520	0.38	+1.0
1,562,527	-		DZA65_RS07520	0.39	-1.2
1,562,610	+		DZA65_RS07520	0.51	+1.0
1,562,611	-		DZA65_RS07520	0.51	-0.5
1,562,663	-		DZA65_RS07520	0.59	-2.0
1,562,672	+		DZA65_RS07520	0.60	-0.2
1,562,672	+		DZA65_RS07520	0.60	+0.1
1,562,672	+		DZA65_RS07520	0.60	-0.1
1,562,673	-		DZA65_RS07520	0.60	+1.1
1,562,686	-		DZA65_RS07520	0.62	+0.5
1,562,719	+		DZA65_RS07520	0.67	-0.8
1,562,720	-		DZA65_RS07520	0.67	-1.3
1,562,720	-		DZA65_RS07520	0.67	+0.8
1,562,720	-		DZA65_RS07520	0.67	-1.2
1,562,721	+		DZA65_RS07520	0.67	-0.0
1,562,722	-		DZA65_RS07520	0.67	-0.3
1,562,746	-		DZA65_RS07520	0.71	-1.0
1,562,746	-		DZA65_RS07520	0.71	-0.0
1,562,756	+		DZA65_RS07520	0.72	-0.5
1,562,757	-		DZA65_RS07520	0.72	-1.5
1,562,786	-		DZA65_RS07520	0.77	+0.8
1,562,786	-		DZA65_RS07520	0.77	+0.1
1,562,786	-		DZA65_RS07520	0.77	+0.8
1,562,786	-		DZA65_RS07520	0.77	-0.3
1,562,786	-		DZA65_RS07520	0.77	-0.0
1,562,845	-		DZA65_RS07520	0.85	+0.2
1,562,860	-		DZA65_RS07520	0.87	+0.8
1,562,878	-				-1.8
1,562,929	-				+0.1
1,562,937	+				-0.2
1,562,938	-				-2.9
1,562,945	-				+0.0
1,562,994	-				+0.5
1,562,994	-				+0.3
1,563,009	-				+1.5
1,563,065	-				-0.6
1,563,120	+		DZA65_RS07525	0.10	+0.4
1,563,120	+		DZA65_RS07525	0.10	-1.8
1,563,145	+		DZA65_RS07525	0.13	-2.0
1,563,321	+		DZA65_RS07525	0.31	-0.5
1,563,322	-		DZA65_RS07525	0.31	-0.6
1,563,373	-		DZA65_RS07525	0.36	-0.5
1,563,403	+		DZA65_RS07525	0.39	-0.6
1,563,403	+		DZA65_RS07525	0.39	+1.5
1,563,630	+		DZA65_RS07525	0.63	-1.9
1,563,699	+		DZA65_RS07525	0.70	-1.8
1,563,700	-		DZA65_RS07525	0.70	-2.8
1,563,745	+		DZA65_RS07525	0.74	+0.8
1,563,756	-		DZA65_RS07525	0.76	-1.0
1,563,786	-		DZA65_RS07525	0.79	-0.0
1,563,786	-		DZA65_RS07525	0.79	-1.8
1,563,805	+		DZA65_RS07525	0.81	+0.1
1,563,806	-		DZA65_RS07525	0.81	-0.5
1,563,806	-		DZA65_RS07525	0.81	-1.5
1,563,806	-		DZA65_RS07525	0.81	-0.4
1,563,806	-		DZA65_RS07525	0.81	-0.5
1,563,806	-		DZA65_RS07525	0.81	-1.9
1,563,808	+		DZA65_RS07525	0.81	-0.5
1,563,808	+		DZA65_RS07525	0.81	+0.5
1,563,808	+		DZA65_RS07525	0.81	-0.5
1,563,808	+		DZA65_RS07525	0.81	-1.8
1,563,808	+		DZA65_RS07525	0.81	-0.5
1,563,809	-		DZA65_RS07525	0.81	+1.2
1,563,809	-		DZA65_RS07525	0.81	+0.5
1,563,809	-		DZA65_RS07525	0.81	-0.5
1,563,809	-		DZA65_RS07525	0.81	-0.3
1,563,809	-		DZA65_RS07525	0.81	-1.9
1,563,809	-		DZA65_RS07525	0.81	-1.8
1,563,810	+		DZA65_RS07525	0.81	-1.3
1,563,810	+		DZA65_RS07525	0.81	-0.2
1,563,811	-		DZA65_RS07525	0.81	-0.2
1,563,844	-		DZA65_RS07525	0.85	+0.9
1,563,913	+				-0.8
1,563,913	+				+0.5
1,563,913	+				-0.9
1,563,914	-				+1.8
1,563,914	-				-0.2
1,563,914	-				-1.6
1,563,914	-				-2.0
1,563,914	-				-0.3
1,563,933	+				+1.0
1,563,933	+				-0.3
1,563,933	+				+0.5
1,563,933	+				-0.3
1,563,933	+				+1.3
1,563,933	+				-1.5
1,563,934	-				-1.3
1,563,934	-				-2.8
1,563,949	+				-2.6
1,563,949	+				+1.1
1,563,989	+				+0.4
1,564,009	-				-1.8
1,564,009	-				-0.7
1,564,027	+				-0.3
1,564,027	+				-3.3
1,564,030	+				-0.6
1,564,030	+				-1.0
1,564,031	-				+1.0
1,564,031	-				+1.3
1,564,031	-				+0.4
1,564,031	-				-1.5
1,564,031	-				-1.0
1,564,031	-				+2.3
1,564,031	-				+0.9
1,564,036	+				-0.0
1,564,036	+				+0.3
1,564,037	-				+0.8
1,564,037	-				-0.0
1,564,037	-				-1.3
1,564,037	-				+2.4
1,564,085	+		DZA65_RS07530	0.23	+1.1
1,564,089	+		DZA65_RS07530	0.25	-0.5
1,564,089	+		DZA65_RS07530	0.25	+0.9
1,564,090	-		DZA65_RS07530	0.26	-1.5
1,564,090	-		DZA65_RS07530	0.26	-0.3
1,564,119	+		DZA65_RS07530	0.39	-0.1
1,564,119	+		DZA65_RS07530	0.39	+1.0
1,564,120	-		DZA65_RS07530	0.39	-0.3
1,564,136	+		DZA65_RS07530	0.46	-0.6
1,564,136	+		DZA65_RS07530	0.46	-0.7
1,564,184	+		DZA65_RS07530	0.68	+0.8
1,564,184	+		DZA65_RS07530	0.68	+0.1
1,564,184	+		DZA65_RS07530	0.68	+0.5
1,564,205	-		DZA65_RS07530	0.77	-0.1
1,564,264	-				-1.5
1,564,348	+				-0.2
1,564,348	+				+0.4
1,564,349	-				-0.9
1,564,349	-				-0.9
1,564,349	-				-2.5
1,564,350	+				-1.3
1,564,350	+				+0.1
1,564,350	+				-1.9
1,564,350	+				+0.4
1,564,350	+				-0.9
1,564,350	+				-2.0
1,564,350	+				+2.0
1,564,350	+				-0.2
1,564,350	+				-0.8
1,564,350	+				+0.5
1,564,350	+				-1.5
1,564,350	+				+1.3
1,564,350	+				-1.0
1,564,350	+				+1.9
1,564,351	-				+0.3
1,564,351	-				-0.1
1,564,351	-				+1.9
1,564,351	-				+0.3
1,564,351	-				+0.7
1,564,351	-				-0.7
1,564,351	-				-2.0
1,564,351	-				-2.0
1,564,351	-				-2.6
1,564,351	-				+0.5
1,564,351	-				-2.5
1,564,351	-				-0.7
1,564,356	-				-0.5
1,564,356	-				-0.2
1,564,361	+				+0.8
1,564,361	+				+0.1
1,564,361	+				-2.0
1,564,361	+				-1.7
1,564,362	-				+1.8
1,564,362	-				+0.5
1,564,363	+				-0.7
1,564,364	-				-0.7
1,564,364	-				+0.5
1,564,370	+				-0.8
1,564,371	-				+0.7
1,564,451	+				+1.5
1,564,451	+				+0.5
1,564,452	-				-1.0
1,564,452	-				-0.3
1,564,452	-				+1.5
1,564,468	+				+0.4
1,564,468	+				-3.0
1,564,468	+				+0.2
1,564,469	-				-2.2
1,564,469	-				-0.7
1,564,469	-				-1.6
1,564,472	+				+1.5
1,564,472	+				+1.3
1,564,478	-				+0.2
1,564,504	+				-0.8
1,564,505	-				-0.5
1,564,505	-				-1.5
1,564,505	-				-1.0
1,564,511	+				-2.5
1,564,523	-				-1.0
1,564,578	+				-3.8
1,564,657	+				-1.8
1,564,657	+				+0.2
1,564,657	+				+1.0
1,564,657	+				-0.5
1,564,658	-				-0.6
1,564,712	+				+0.5
1,564,713	-				+3.7
1,564,714	+				-0.1
1,564,714	+				-2.0
1,564,731	+				+1.6
1,564,732	-				-0.0
1,564,732	-				+0.1
1,564,768	-				+0.1
1,564,783	-				+1.3
1,564,791	-				+1.0
1,564,798	+				-1.9
1,564,798	+				+1.2
1,564,798	+				-0.7
1,564,798	+				+0.6
1,564,798	+				+1.1
1,564,798	+				+1.0
1,564,800	+				+0.5
1,564,848	-				+0.2
1,564,886	+				+0.5
1,564,886	+				+0.1
1,564,887	-				+0.1
1,564,887	-				+0.3
1,564,887	-				+1.1
1,564,887	-				-0.2
1,564,887	-				+0.4
1,564,887	-				-0.4
1,564,899	-				+0.2
1,564,946	+				+0.5
1,564,947	-				-0.3
1,564,985	+		DZA65_RS07535	0.10	+0.3
1,564,986	-		DZA65_RS07535	0.10	-0.9
1,564,987	+		DZA65_RS07535	0.10	+0.3
1,564,987	+		DZA65_RS07535	0.10	+0.8
1,564,988	-		DZA65_RS07535	0.10	-1.3