Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06610

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,372,478	+		DZA65_RS06600	0.56	-1.0
1,372,478	+		DZA65_RS06600	0.56	-0.3
1,372,479	-		DZA65_RS06600	0.56	-3.1
1,372,479	-		DZA65_RS06600	0.56	-2.0
1,372,482	+		DZA65_RS06600	0.57	+0.9
1,372,482	+		DZA65_RS06600	0.57	+1.4
1,372,483	-		DZA65_RS06600	0.57	-1.1
1,372,483	-		DZA65_RS06600	0.57	+0.4
1,372,668	+		DZA65_RS06600	0.82	+0.2
1,372,668	+		DZA65_RS06600	0.82	+1.7
1,372,668	+		DZA65_RS06600	0.82	-1.4
1,372,707	+		DZA65_RS06600	0.88	-0.6
1,372,772	+				+0.2
1,372,772	+				-0.2
1,372,773	-				+2.5
1,372,818	+				-0.9
1,372,819	-				-1.3
1,372,858	-				-0.7
1,372,886	+		DZA65_RS06605	0.13	+2.5
1,372,886	+		DZA65_RS06605	0.13	+0.4
1,372,887	-		DZA65_RS06605	0.13	-1.2
1,372,887	-		DZA65_RS06605	0.13	-0.9
1,372,953	+		DZA65_RS06605	0.23	-0.1
1,372,953	+		DZA65_RS06605	0.23	+0.9
1,372,953	+		DZA65_RS06605	0.23	-0.8
1,372,953	+		DZA65_RS06605	0.23	+1.1
1,372,953	+		DZA65_RS06605	0.23	-2.1
1,372,953	+		DZA65_RS06605	0.23	-0.3
1,372,954	-		DZA65_RS06605	0.23	-1.7
1,372,954	-				+1.7
1,372,954	-		DZA65_RS06605	0.23	-2.5
1,372,954	-		DZA65_RS06605	0.23	-1.3
1,372,967	-		DZA65_RS06605	0.25	-0.5
1,372,967	-		DZA65_RS06605	0.25	+0.8
1,373,104	+		DZA65_RS06605	0.46	+0.4
1,373,104	+		DZA65_RS06605	0.46	-3.2
1,373,104	+		DZA65_RS06605	0.46	-0.6
1,373,105	-		DZA65_RS06605	0.46	-0.6
1,373,136	+		DZA65_RS06605	0.50	+1.8
1,373,140	-		DZA65_RS06605	0.51	-1.6
1,373,165	+		DZA65_RS06605	0.55	-1.8
1,373,170	+		DZA65_RS06605	0.55	-0.2
1,373,170	+		DZA65_RS06605	0.55	+1.4
1,373,171	-		DZA65_RS06605	0.56	+0.8
1,373,244	+		DZA65_RS06605	0.66	-2.3
1,373,244	+		DZA65_RS06605	0.66	-0.3
1,373,244	+		DZA65_RS06605	0.66	+1.9
1,373,245	-		DZA65_RS06605	0.67	-0.3
1,373,245	-		DZA65_RS06605	0.67	+1.4
1,373,295	+		DZA65_RS06605	0.74	-0.9
1,373,295	+		DZA65_RS06605	0.74	+0.7
1,373,295	+		DZA65_RS06605	0.74	-0.9
1,373,295	+		DZA65_RS06605	0.74	+1.9
1,373,296	-		DZA65_RS06605	0.74	-2.3
1,373,296	-		DZA65_RS06605	0.74	-0.5
1,373,423	+				+0.4
1,373,423	+				-0.1
1,373,423	+				-1.5
1,373,424	-				+0.8
1,373,424	-				+0.8
1,373,424	-				-0.9
1,373,424	-				+0.7
1,373,428	-				+2.3
1,373,428	-				-0.4
1,373,466	+				+0.4
1,373,466	+				+0.7
1,373,466	+				+0.2
1,373,466	+				-0.8
1,373,473	-				+0.7
1,373,473	-				-0.1
1,373,473	-				-0.0
1,373,477	-				-0.6
1,373,510	+				+0.8
1,373,510	+				-0.2
1,373,510	+				-0.8
1,373,510	+				-2.5
1,373,511	-				+1.7
1,373,511	-				+0.8
1,373,511	-				+1.0
1,373,511	-				+0.7
1,373,560	+		DZA65_RS06610	0.11	+0.3
1,373,560	+		DZA65_RS06610	0.11	-1.3
1,373,560	+		DZA65_RS06610	0.11	+1.0
1,373,561	-		DZA65_RS06610	0.12	+1.3
1,373,561	-		DZA65_RS06610	0.12	+0.4
1,373,561	-		DZA65_RS06610	0.12	-0.3
1,373,561	-		DZA65_RS06610	0.12	-1.9
1,373,561	-		DZA65_RS06610	0.12	-0.1
1,373,590	+		DZA65_RS06610	0.16	+0.2
1,373,591	-		DZA65_RS06610	0.16	+0.4
1,373,605	+		DZA65_RS06610	0.18	-0.1
1,373,743	+		DZA65_RS06610	0.36	+0.2
1,373,743	+		DZA65_RS06610	0.36	-0.9
1,373,744	-		DZA65_RS06610	0.36	+0.4
1,373,744	-		DZA65_RS06610	0.36	-0.7
1,373,744	-		DZA65_RS06610	0.36	+0.7
1,373,749	+		DZA65_RS06610	0.37	+0.7
1,373,749	+		DZA65_RS06610	0.37	+0.2
1,373,749	+		DZA65_RS06610	0.37	+0.4
1,373,749	+		DZA65_RS06610	0.37	+1.2
1,373,750	-		DZA65_RS06610	0.37	+2.5
1,373,750	-		DZA65_RS06610	0.37	+0.2
1,373,816	+		DZA65_RS06610	0.46	+0.2
1,373,816	+		DZA65_RS06610	0.46	-1.3
1,373,816	+		DZA65_RS06610	0.46	+1.3
1,373,817	-		DZA65_RS06610	0.46	-0.7
1,373,817	-		DZA65_RS06610	0.46	-0.0
1,373,858	+		DZA65_RS06610	0.52	+1.6
1,373,858	+		DZA65_RS06610	0.52	+0.2
1,373,858	+				+2.5
1,373,859	-		DZA65_RS06610	0.52	+1.9
1,373,943	+		DZA65_RS06610	0.63	-0.3
1,373,944	-		DZA65_RS06610	0.63	-1.0
1,373,962	+		DZA65_RS06610	0.66	-2.3
1,373,962	+		DZA65_RS06610	0.66	+1.5
1,373,963	-		DZA65_RS06610	0.66	+0.1
1,373,963	-		DZA65_RS06610	0.66	+0.6
1,373,963	-		DZA65_RS06610	0.66	-0.6
1,373,963	-		DZA65_RS06610	0.66	+1.9
1,374,013	+		DZA65_RS06610	0.73	-0.3
1,374,013	+		DZA65_RS06610	0.73	+0.7
1,374,013	+		DZA65_RS06610	0.73	-1.2
1,374,014	-		DZA65_RS06610	0.73	+0.4
1,374,014	-		DZA65_RS06610	0.73	+0.7
1,374,014	-		DZA65_RS06610	0.73	+1.9
1,374,014	-		DZA65_RS06610	0.73	+0.3
1,374,014	-		DZA65_RS06610	0.73	+0.5
1,374,118	-		DZA65_RS06610	0.87	+1.7
1,374,140	+		DZA65_RS06610	0.90	-2.3
1,374,141	-		DZA65_RS06610	0.90	+0.4
1,374,154	+				-1.0
1,374,154	+				+0.7
1,374,154	+				-2.2
1,374,155	-				-0.7
1,374,155	-				-1.0
1,374,155	-				-1.3
1,374,155	-				-1.7
1,374,155	-				+0.3
1,374,155	-				-0.8
1,374,161	+				-0.3
1,374,161	+				+0.7
1,374,162	-				+2.1
1,374,162	-				+0.3
1,374,207	+				-1.7
1,374,207	+				+0.7
1,374,207	+				+0.5
1,374,208	-				+0.3
1,374,215	+				-0.3
1,374,349	+				+0.6
1,374,349	+				+0.2
1,374,350	-				+0.8
1,374,359	+				-1.6
1,374,359	+				+1.1
1,374,360	-				-1.1
1,374,360	-				-0.4
1,374,369	-				+0.2
1,374,369	-				+1.7
1,374,371	+				-0.9
1,374,372	-				-2.8
1,374,372	-				+1.2
1,374,390	+				+0.6
1,374,391	-				-0.0
1,374,437	+				-1.1
1,374,437	+				+0.6
1,374,437	+				-0.3
1,374,437	+				+0.6
1,374,437	+				-0.0
1,374,437	+				-1.9
1,374,437	+				+2.3
1,374,437	+				+0.8
1,374,437	+				-2.5
1,374,437	+				-2.2
1,374,437	+				+0.2
1,374,438	-				-0.4
1,374,438	-				-1.7
1,374,438	-				+0.1
1,374,438	-				+0.5
1,374,438	-				-0.5
1,374,438	-				-0.4
1,374,438	-				-0.0
1,374,438	-				+1.3
1,374,438	-				-1.8
1,374,438	-				-0.9
1,374,438	-				-0.1
1,374,438	-				+0.0
1,374,438	-				-1.4
1,374,438	-				+0.4
1,374,438	-				-0.3
1,374,438	-				+1.4
1,374,438	-				+1.3
1,374,438	-				+1.6
1,374,438	-				-0.1
1,374,488	+		DZA65_RS06615	0.12	-0.1
1,374,518	-		DZA65_RS06615	0.15	-0.7
1,374,518	-		DZA65_RS06615	0.15	+0.1
1,374,518	-		DZA65_RS06615	0.15	-0.1
1,374,568	-		DZA65_RS06615	0.20	-0.4
1,374,615	+		DZA65_RS06615	0.26	-0.9
1,374,810	+		DZA65_RS06615	0.47	+1.6
1,374,810	+		DZA65_RS06615	0.47	+1.6
1,374,811	-		DZA65_RS06615	0.47	-1.9
1,374,811	-		DZA65_RS06615	0.47	-1.7
1,374,812	-				+0.6
1,374,901	-		DZA65_RS06615	0.56	+0.5
1,375,079	+		DZA65_RS06615	0.76	+1.6
1,375,079	+		DZA65_RS06615	0.76	-1.6
1,375,092	-		DZA65_RS06615	0.77	+1.3
1,375,096	+		DZA65_RS06615	0.78	+0.2
1,375,096	+		DZA65_RS06615	0.78	+0.4