Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06240

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,292,005	+				+1.4
1,292,006	-				-0.3
1,292,057	+		DZA65_RS06230	0.13	+1.5
1,292,057	+		DZA65_RS06230	0.13	-1.7
1,292,058	-		DZA65_RS06230	0.14	-1.3
1,292,058	-		DZA65_RS06230	0.14	-0.3
1,292,058	-		DZA65_RS06230	0.14	+0.6
1,292,114	+		DZA65_RS06230	0.27	+0.1
1,292,115	-		DZA65_RS06230	0.27	+0.3
1,292,115	-		DZA65_RS06230	0.27	+0.9
1,292,115	-		DZA65_RS06230	0.27	-0.9
1,292,128	+		DZA65_RS06230	0.30	+0.1
1,292,128	+		DZA65_RS06230	0.30	-1.6
1,292,128	+		DZA65_RS06230	0.30	-0.3
1,292,128	+				-0.9
1,292,129	-		DZA65_RS06230	0.30	-0.2
1,292,129	-		DZA65_RS06230	0.30	-0.2
1,292,129	-		DZA65_RS06230	0.30	+0.5
1,292,293	+		DZA65_RS06230	0.69	+1.7
1,292,293	+		DZA65_RS06230	0.69	-1.5
1,292,294	-		DZA65_RS06230	0.70	+1.6
1,292,294	-		DZA65_RS06230	0.70	-2.9
1,292,294	-		DZA65_RS06230	0.70	-0.9
1,292,294	-		DZA65_RS06230	0.70	-0.2
1,292,446	+				-0.1
1,292,446	+				-2.5
1,292,446	+				+0.4
1,292,446	+				+1.3
1,292,446	+				-0.2
1,292,465	+				-3.6
1,292,465	+				+0.4
1,292,465	+				+0.8
1,292,466	-				+0.3
1,292,466	-				-2.3
1,292,466	-				+2.3
1,292,466	-				-1.6
1,292,494	+				-0.6
1,292,494	+				-0.6
1,292,494	+				-0.3
1,292,494	+				-0.3
1,292,494	+				-1.3
1,292,494	+				-0.7
1,292,495	-				+0.7
1,292,495	-				+2.5
1,292,495	-				-0.0
1,292,495	-				+1.7
1,292,547	+				+1.3
1,292,547	+				-1.7
1,292,547	+				-0.2
1,292,547	+				+0.8
1,292,673	+		DZA65_RS06235	0.34	-0.1
1,292,673	+		DZA65_RS06235	0.34	-2.0
1,292,673	+		DZA65_RS06235	0.34	-1.9
1,292,673	+		DZA65_RS06235	0.34	+0.6
1,292,673	+		DZA65_RS06235	0.34	+0.8
1,292,673	+		DZA65_RS06235	0.34	-2.5
1,292,674	-		DZA65_RS06235	0.34	+0.3
1,292,674	-		DZA65_RS06235	0.34	-2.3
1,292,674	-		DZA65_RS06235	0.34	-0.3
1,292,674	-		DZA65_RS06235	0.34	+1.0
1,292,674	-		DZA65_RS06235	0.34	+0.4
1,292,674	-		DZA65_RS06235	0.34	-1.1
1,292,674	-		DZA65_RS06235	0.34	-2.5
1,292,676	+		DZA65_RS06235	0.34	-1.2
1,292,676	+				+2.1
1,292,676	+		DZA65_RS06235	0.34	+0.1
1,292,676	+		DZA65_RS06235	0.34	+0.3
1,292,676	+		DZA65_RS06235	0.34	-1.3
1,292,676	+		DZA65_RS06235	0.34	+1.7
1,292,676	+		DZA65_RS06235	0.34	+0.4
1,292,677	-		DZA65_RS06235	0.34	+2.0
1,292,677	-		DZA65_RS06235	0.34	+0.5
1,292,677	-		DZA65_RS06235	0.34	+1.1
1,292,677	-		DZA65_RS06235	0.34	+1.4
1,292,677	-		DZA65_RS06235	0.34	+1.3
1,292,677	-		DZA65_RS06235	0.34	+1.8
1,292,677	-		DZA65_RS06235	0.34	-0.3
1,292,677	-		DZA65_RS06235	0.34	-0.4
1,292,677	-		DZA65_RS06235	0.34	+0.1
1,292,677	-		DZA65_RS06235	0.34	+0.7
1,292,974	+				+0.8
1,292,974	+				+0.3
1,292,974	+				-0.3
1,292,974	+				+1.4
1,292,974	+				+0.2
1,292,974	+				+1.0
1,293,112	+		DZA65_RS06240	0.15	+0.7
1,293,112	+		DZA65_RS06240	0.15	+1.1
1,293,113	-		DZA65_RS06240	0.15	-1.7
1,293,113	-		DZA65_RS06240	0.15	-0.9
1,293,130	+		DZA65_RS06240	0.17	+0.4
1,293,130	+		DZA65_RS06240	0.17	-1.3
1,293,130	+		DZA65_RS06240	0.17	+0.7
1,293,131	-		DZA65_RS06240	0.17	-0.3
1,293,131	-		DZA65_RS06240	0.17	-1.1
1,293,146	+		DZA65_RS06240	0.19	-1.3
1,293,146	+		DZA65_RS06240	0.19	-1.3
1,293,146	+		DZA65_RS06240	0.19	-2.1
1,293,332	+		DZA65_RS06240	0.39	+0.9
1,293,333	-		DZA65_RS06240	0.39	+0.1
1,293,427	-		DZA65_RS06240	0.50	+0.1
1,293,427	-		DZA65_RS06240	0.50	+1.7
1,293,427	-		DZA65_RS06240	0.50	-0.4
1,293,488	+		DZA65_RS06240	0.56	+1.1
1,293,592	+		DZA65_RS06240	0.68	+0.0
1,293,592	+		DZA65_RS06240	0.68	-0.2
1,293,593	-		DZA65_RS06240	0.68	-2.7
1,293,624	-		DZA65_RS06240	0.71	+0.6
1,293,624	-		DZA65_RS06240	0.71	-2.3
1,293,734	+		DZA65_RS06240	0.83	-1.0
1,293,735	-		DZA65_RS06240	0.83	+0.4
1,293,741	+		DZA65_RS06240	0.84	-1.3
1,293,741	+		DZA65_RS06240	0.84	+2.0
1,293,779	-		DZA65_RS06240	0.88	+0.9
1,293,779	-		DZA65_RS06240	0.88	-0.7
1,293,808	+				-0.9
1,293,819	+				-0.8
1,293,875	+				-1.0
1,293,875	+				-0.8
1,293,875	+				+0.7
1,293,876	-				-0.3
1,293,876	-				-1.6
1,293,876	-				-0.3
1,293,876	-				-0.7
1,293,926	-				+0.3
1,293,952	+				-2.5
1,293,952	+				-0.5
1,293,952	+				+0.8
1,293,976	+				-1.2
1,293,977	-				-1.1
1,294,022	+				+1.5
1,294,022	+				+0.7
1,294,022	+				-0.7
1,294,022	+				+1.7
1,294,022	+				-1.0
1,294,022	+				+1.3
1,294,022	+				-0.2
1,294,022	+				+0.9
1,294,022	+				-2.2
1,294,022	+				-1.3
1,294,022	+				+0.2
1,294,023	-				+2.3
1,294,023	-				-0.5
1,294,023	-				+0.3
1,294,023	-				+2.3
1,294,023	-				-0.3
1,294,023	-				-2.5
1,294,023	-				-1.7
1,294,023	-				+0.7
1,294,023	-				+0.4
1,294,023	-				+0.5
1,294,023	-				-1.3
1,294,023	-				-1.3
1,294,023	-				-0.2
1,294,023	-				+0.3
1,294,023	-				+0.1
1,294,023	-				+0.2
1,294,023	-				-0.4
1,294,026	+				-0.2
1,294,027	-				-0.5
1,294,027	-				-0.6
1,294,053	+		DZA65_RS06245	0.12	+0.3
1,294,054	-		DZA65_RS06245	0.13	+0.7
1,294,054	-		DZA65_RS06245	0.13	+1.0
1,294,054	-		DZA65_RS06245	0.13	+1.4
1,294,054	-		DZA65_RS06245	0.13	+1.8
1,294,054	-		DZA65_RS06245	0.13	-1.9
1,294,201	+		DZA65_RS06245	0.69	-0.3
1,294,201	+		DZA65_RS06245	0.69	+1.1
1,294,271	+				-0.3
1,294,272	-				+0.5
1,294,272	-				+1.0
1,294,288	+				+1.5
1,294,289	-				-0.0
1,294,294	+				+1.2
1,294,294	+				-0.7
1,294,294	+				-3.5
1,294,294	+				+1.3
1,294,294	+				-0.8
1,294,295	-				+1.0
1,294,295	-				-0.1
1,294,295	-				+0.4
1,294,295	-				-1.7
1,294,305	+				+1.1
1,294,311	+				-1.9
1,294,312	-				+0.4
1,294,322	+				+0.1
1,294,328	+				-2.1
1,294,328	+				+0.7
1,294,328	+				+0.8
1,294,328	+				+0.6
1,294,328	+				+0.3
1,294,329	-				+0.2
1,294,329	-				+1.0
1,294,332	+				-0.4
1,294,333	-				-0.1
1,294,339	-				+1.1