Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06100

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,258,261	+				-0.2
1,258,261	+				-0.1
1,258,261	+				-0.1
1,258,261	+				+2.7
1,258,261	+				-0.0
1,258,262	-				-1.3
1,258,299	-				+0.5
1,258,299	-				-0.7
1,258,300	+				-1.7
1,258,300	+				+0.7
1,258,300	+				-2.4
1,258,300	+				+1.7
1,258,300	+				-0.3
1,258,300	+				+2.2
1,258,301	-				-0.8
1,258,301	-				+0.3
1,258,333	-				+0.7
1,258,525	-				-1.3
1,258,555	-				+1.3
1,258,555	-				-2.1
1,258,557	+				-0.5
1,258,570	+				+0.6
1,258,571	-				-0.1
1,258,571	-				-1.2
1,258,571	-				-0.1
1,258,571	-				-0.1
1,258,581	+				+0.7
1,258,582	-				-0.1
1,258,589	-				+1.9
1,258,589	-				-1.3
1,258,603	-				-1.7
1,258,610	-				+0.5
1,258,610	-				+0.5
1,258,754	-				+0.2
1,258,790	+				+0.7
1,258,810	+				+0.8
1,258,811	-				+0.2
1,258,815	-				+1.1
1,258,815	-				+0.1
1,258,824	+				-0.9
1,258,824	+				-2.7
1,258,900	+				-0.7
1,258,900	+				-0.3
1,258,908	+				+0.4
1,258,990	-		DZA65_RS06095	0.24	-0.7
1,259,178	-				+0.5
1,259,181	+				-0.9
1,259,292	+		DZA65_RS06100	0.25	-1.9
1,259,293	-		DZA65_RS06100	0.25	-1.1
1,259,299	+		DZA65_RS06100	0.27	-1.3
1,259,299	+		DZA65_RS06100	0.27	-1.1
1,259,299	+		DZA65_RS06100	0.27	-1.8
1,259,316	-		DZA65_RS06100	0.32	-1.7
1,259,317	+		DZA65_RS06100	0.32	-0.3
1,259,317	+		DZA65_RS06100	0.32	-1.3
1,259,317	+		DZA65_RS06100	0.32	-0.7
1,259,317	+		DZA65_RS06100	0.32	-1.8
1,259,318	-		DZA65_RS06100	0.32	-0.4
1,259,318	-		DZA65_RS06100	0.32	-0.8
1,259,318	-		DZA65_RS06100	0.32	-1.1
1,259,318	-		DZA65_RS06100	0.32	-2.6
1,259,333	-		DZA65_RS06100	0.36	+0.3
1,259,352	+		DZA65_RS06100	0.41	-0.7
1,259,352	+		DZA65_RS06100	0.41	+0.8
1,259,387	+		DZA65_RS06100	0.51	-0.7
1,259,388	-		DZA65_RS06100	0.51	-0.1
1,259,388	-		DZA65_RS06100	0.51	-1.5
1,259,406	-		DZA65_RS06100	0.56	-3.5
1,259,406	-		DZA65_RS06100	0.56	-0.7
1,259,425	-		DZA65_RS06100	0.61	+0.6
1,259,425	-		DZA65_RS06100	0.61	-2.9
1,259,425	-		DZA65_RS06100	0.61	-1.2
1,259,474	+		DZA65_RS06100	0.75	-1.9
1,259,474	+		DZA65_RS06100	0.75	-0.3
1,259,481	+				+0.7
1,259,481	+				+0.7
1,259,481	+		DZA65_RS06100	0.76	+1.3
1,259,482	-		DZA65_RS06100	0.77	-1.3
1,259,482	-		DZA65_RS06100	0.77	+2.2
1,259,482	-		DZA65_RS06100	0.77	+0.2
1,259,482	-		DZA65_RS06100	0.77	+0.1
1,259,538	-				-0.7
1,259,542	+				-0.8
1,259,542	+				+0.3
1,259,543	-				-0.3
1,259,543	-				+0.9
1,259,543	-				-1.2
1,259,557	+				-2.3
1,259,557	+				-1.5
1,259,558	-				-1.1
1,259,558	-				-1.5
1,259,558	-				-3.0
1,259,567	+				+0.2
1,259,567	+				+2.0
1,259,567	+				-0.9
1,259,567	+				+3.2
1,259,567	+				-1.3
1,259,567	+				-2.3
1,259,567	+				-0.3
1,259,568	-				+1.2
1,259,568	-				-1.3
1,259,568	-				-1.7
1,259,568	-				+0.0
1,259,571	+				-0.3
1,259,571	+				+1.7
1,259,571	+				-0.6
1,259,572	-				-0.4
1,259,572	-				-0.5
1,259,581	+				+0.7
1,259,582	-				+0.2
1,259,586	+				-0.7
1,259,587	-				+0.3
1,259,650	+				+0.5
1,259,651	-				+0.5
1,259,651	-				-1.1
1,259,651	-				+0.5
1,259,651	-				-1.3
1,259,665	+				+0.8
1,259,665	+				-2.1
1,259,665	+				-0.6
1,259,683	-				+0.8
1,259,688	+				-0.9
1,259,765	+				-1.1
1,259,765	+				+0.9
1,259,766	-				+1.7
1,259,766	-				+1.5
1,259,766	-				-0.7
1,259,814	+				+0.1
1,259,852	+				-1.5
1,259,852	+				+0.1
1,259,852	+				+0.5
1,259,852	+				-0.6
1,259,853	-				-1.5
1,259,853	-				-1.0
1,259,855	-				+0.3
1,259,855	-				+0.9
1,259,856	+				+0.7
1,259,856	+				+0.1
1,259,856	+				+0.4
1,259,857	-				+0.6
1,259,857	-				-0.2
1,259,879	+				+1.4
1,259,879	+				-0.5
1,259,879	+				-0.1
1,259,880	-				-0.4
1,259,880	-				-1.1
1,259,881	+				-1.7
1,259,881	+				-0.7
1,259,882	-				+1.3
1,259,920	-				+0.3
1,259,920	-				-0.2
1,260,022	+				+1.1
1,260,067	+				+0.7
1,260,067	+				+0.3
1,260,068	-				-1.9
1,260,070	+				-0.1
1,260,073	+				-1.7
1,260,104	-		DZA65_RS06105	0.19	+0.4
1,260,129	+		DZA65_RS06105	0.37	-0.1
1,260,129	+		DZA65_RS06105	0.37	+0.7
1,260,130	-		DZA65_RS06105	0.38	+1.4
1,260,140	+		DZA65_RS06105	0.44	+1.3
1,260,140	+		DZA65_RS06105	0.44	-0.7
1,260,140	+		DZA65_RS06105	0.44	+0.7
1,260,140	+		DZA65_RS06105	0.44	+1.0
1,260,141	-		DZA65_RS06105	0.45	-0.6
1,260,141	-		DZA65_RS06105	0.45	+0.7
1,260,168	+		DZA65_RS06105	0.64	-0.6
1,260,169	-		DZA65_RS06105	0.65	-0.3
1,260,208	+				-0.1
1,260,208	+				-0.9
1,260,208	+				+0.0
1,260,208	+				-0.1
1,260,208	+				+0.1
1,260,208	+				-1.5
1,260,209	-				+1.0
1,260,209	-				+0.5
1,260,209	-				+1.3
1,260,211	+				-2.8
1,260,211	+				-0.2
1,260,211	+				+0.8
1,260,212	-				+0.0
1,260,223	+				-0.2
1,260,223	+				-0.2
1,260,223	+				-2.9
1,260,224	-				-1.2
1,260,282	+		DZA65_RS06110	0.19	-1.1
1,260,297	-		DZA65_RS06110	0.25	+0.0
1,260,297	-		DZA65_RS06110	0.25	+1.3
1,260,317	+		DZA65_RS06110	0.33	+0.7
1,260,317	+		DZA65_RS06110	0.33	+0.6
1,260,318	-		DZA65_RS06110	0.33	+1.1
1,260,320	+		DZA65_RS06110	0.34	-0.6
1,260,320	+		DZA65_RS06110	0.34	+0.7
1,260,320	+		DZA65_RS06110	0.34	+1.3
1,260,321	-		DZA65_RS06110	0.34	+0.9
1,260,321	-		DZA65_RS06110	0.34	-0.7
1,260,321	-		DZA65_RS06110	0.34	+1.1
1,260,356	+		DZA65_RS06110	0.48	+0.1
1,260,356	+		DZA65_RS06110	0.48	+2.0
1,260,356	+		DZA65_RS06110	0.48	-0.0
1,260,356	+		DZA65_RS06110	0.48	-1.1
1,260,356	+		DZA65_RS06110	0.48	+0.7
1,260,356	+		DZA65_RS06110	0.48	+1.4
1,260,357	-		DZA65_RS06110	0.48	-1.0
1,260,357	-		DZA65_RS06110	0.48	-3.6
1,260,357	-		DZA65_RS06110	0.48	-0.1
1,260,357	-		DZA65_RS06110	0.48	-0.9
1,260,363	-		DZA65_RS06110	0.51	-1.5
1,260,363	-		DZA65_RS06110	0.51	-0.1
1,260,383	+		DZA65_RS06110	0.59	-0.1
1,260,383	+		DZA65_RS06110	0.59	-2.7
1,260,384	-		DZA65_RS06110	0.59	+0.7
1,260,384	-		DZA65_RS06110	0.59	+0.7
1,260,418	-		DZA65_RS06110	0.73	+0.3
1,260,419	+		DZA65_RS06110	0.73	+0.6
1,260,462	-				-1.7
1,260,462	-				-0.6
1,260,465	+				+0.3
1,260,465	+				-0.5
1,260,465	+				-2.1
1,260,465	+				-1.3
1,260,465	+				+0.3
1,260,465	+				+1.3
1,260,466	-				+0.3
1,260,466	-				-1.7
1,260,466	-				-0.6
1,260,466	-				+2.8
1,260,466	-				+0.9
1,260,466	-				-2.1
1,260,535	+				-2.7
1,260,554	-				-0.3
1,260,554	-				+0.1