Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS06030

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
1,244,751	-				+3.0
1,244,829	+				-2.5
1,244,834	+				+1.0
1,244,835	-				+0.4
1,244,866	+				-0.9
1,244,866	+				-1.3
1,244,866	+				+1.0
1,244,866	+				-0.4
1,244,866	+				-1.1
1,244,866	+				-2.7
1,244,867	-				-1.7
1,244,867	-				+0.3
1,244,867	-				+1.7
1,244,885	+				+1.3
1,244,886	-				+0.9
1,244,886	-				+0.7
1,244,891	+				+0.3
1,244,891	+				+0.4
1,244,891	+				-2.2
1,244,892	-				+1.7
1,244,917	+				-0.7
1,244,917	+				+1.1
1,244,917	+				+0.3
1,244,918	-				-0.0
1,244,918	-				-0.3
1,244,920	+				-0.0
1,244,920	+				+3.1
1,244,921	-				+0.9
1,244,921	-				-0.3
1,244,921	-				-1.7
1,244,921	-				-0.7
1,244,921	-				+0.4
1,244,921	-				+1.3
1,244,926	+				-1.3
1,244,926	+				-0.9
1,244,926	+				-1.7
1,244,926	+				+0.7
1,244,927	-				+0.7
1,244,927	-				-0.1
1,244,927	-				-0.1
1,244,927	-				-0.7
1,245,030	+		DZA65_RS06025	0.30	+0.7
1,245,030	+		DZA65_RS06025	0.30	+0.5
1,245,030	+		DZA65_RS06025	0.30	+0.7
1,245,031	-		DZA65_RS06025	0.31	+2.2
1,245,174	-		DZA65_RS06025	0.83	-0.5
1,245,224	+				-1.9
1,245,225	-				-2.0
1,245,225	-				-0.4
1,245,225	-				+0.6
1,245,225	-				-1.1
1,245,225	-				+0.5
1,245,228	+				-0.3
1,245,269	+				+0.3
1,245,269	+				+1.7
1,245,269	+				+0.3
1,245,270	-				-1.9
1,245,270	-				+1.3
1,245,290	+				-0.5
1,245,295	+				-0.7
1,245,296	-				-0.3
1,245,296	-				+1.3
1,245,296	-				+0.9
1,245,300	+				-0.3
1,245,300	+				-0.2
1,245,300	+				+1.4
1,245,300	+				-1.7
1,245,300	+				-1.2
1,245,300	+				-0.9
1,245,300	+				-0.2
1,245,300	+				+0.3
1,245,301	-				-0.7
1,245,301	-				-1.7
1,245,302	+				+0.3
1,245,302	+				-0.4
1,245,302	+				+0.8
1,245,302	+				+0.8
1,245,302	+				-1.7
1,245,302	+				+0.3
1,245,302	+				-0.8
1,245,302	+				-2.9
1,245,302	+				+0.8
1,245,302	+				-2.0
1,245,303	-				+0.1
1,245,303	-				+0.2
1,245,303	-				-1.9
1,245,303	-				-0.7
1,245,303	-				+1.4
1,245,303	-				+0.9
1,245,317	+				-1.7
1,245,317	+				+1.4
1,245,317	+				+0.8
1,245,317	+				+0.1
1,245,318	-				+0.3
1,245,318	-				-0.4
1,245,318	-				-0.3
1,245,318	-				+0.8
1,245,318	-				+1.6
1,245,346	-				-1.3
1,245,352	-				-2.7
1,245,357	+				+1.5
1,245,368	+				+0.1
1,245,368	+				+0.0
1,245,369	-				+0.3
1,245,369	-				-1.8
1,245,398	+				-2.3
1,245,398	+				+0.9
1,245,398	+				+1.7
1,245,398	+				-1.6
1,245,398	+				+0.7
1,245,399	-				-0.9
1,245,399	-				-0.5
1,245,453	+				+3.0
1,245,454	-				-0.3
1,245,454	-				+0.7
1,245,454	-				-1.3
1,245,474	+				+1.9
1,245,474	+				-0.3
1,245,474	+				-0.3
1,245,474	+				-1.0
1,245,474	+				+0.5
1,245,475	-				-0.3
1,245,475	-				-0.3
1,245,475	-				+0.1
1,245,475	-				-1.1
1,245,571	+				-1.7
1,245,572	-				+0.9
1,245,651	-				-0.7
1,245,721	+		DZA65_RS06030	0.13	-0.9
1,245,721	+		DZA65_RS06030	0.13	+0.7
1,245,721	+		DZA65_RS06030	0.13	+0.9
1,245,721	+		DZA65_RS06030	0.13	-0.4
1,245,721	+		DZA65_RS06030	0.13	+1.2
1,245,721	+		DZA65_RS06030	0.13	-0.7
1,245,721	+		DZA65_RS06030	0.13	-2.8
1,245,721	+		DZA65_RS06030	0.13	+0.5
1,245,722	-		DZA65_RS06030	0.13	-0.2
1,245,722	-		DZA65_RS06030	0.13	+0.2
1,245,722	-		DZA65_RS06030	0.13	-0.1
1,245,722	-		DZA65_RS06030	0.13	+0.1
1,245,722	-		DZA65_RS06030	0.13	-0.1
1,245,722	-		DZA65_RS06030	0.13	-1.7
1,245,722	-		DZA65_RS06030	0.13	-0.3
1,245,722	-		DZA65_RS06030	0.13	-1.5
1,245,723	+		DZA65_RS06030	0.13	+0.3
1,245,723	+		DZA65_RS06030	0.13	+0.7
1,245,723	+		DZA65_RS06030	0.13	-0.3
1,245,723	+		DZA65_RS06030	0.13	-1.9
1,245,723	+		DZA65_RS06030	0.13	+1.5
1,245,723	+		DZA65_RS06030	0.13	-0.5
1,245,723	+		DZA65_RS06030	0.13	-1.6
1,245,723	+		DZA65_RS06030	0.13	+0.2
1,245,723	+		DZA65_RS06030	0.13	-0.5
1,245,723	+		DZA65_RS06030	0.13	-1.1
1,245,723	+		DZA65_RS06030	0.13	-0.9
1,245,724	-		DZA65_RS06030	0.13	-3.7
1,245,724	-		DZA65_RS06030	0.13	-1.1
1,245,724	-		DZA65_RS06030	0.13	+0.7
1,245,738	+		DZA65_RS06030	0.14	+0.3
1,245,738	+		DZA65_RS06030	0.14	-1.2
1,245,784	+		DZA65_RS06030	0.16	-2.5
1,245,784	+		DZA65_RS06030	0.16	-0.1
1,245,785	-		DZA65_RS06030	0.16	+0.4
1,245,792	+		DZA65_RS06030	0.17	-0.3
1,245,792	+		DZA65_RS06030	0.17	-2.3
1,245,808	-		DZA65_RS06030	0.18	-0.5
1,245,861	+		DZA65_RS06030	0.21	-0.6
1,245,862	-		DZA65_RS06030	0.21	+0.7
1,245,862	-		DZA65_RS06030	0.21	-0.4
1,245,882	+		DZA65_RS06030	0.22	-0.4
1,245,882	+		DZA65_RS06030	0.22	+0.3
1,245,882	+		DZA65_RS06030	0.22	-0.1
1,245,882	+		DZA65_RS06030	0.22	+0.3
1,245,882	+		DZA65_RS06030	0.22	+0.1
1,245,882	+		DZA65_RS06030	0.22	-0.0
1,245,882	+		DZA65_RS06030	0.22	-0.3
1,245,882	+		DZA65_RS06030	0.22	-0.9
1,245,882	+		DZA65_RS06030	0.22	-0.1
1,245,882	+		DZA65_RS06030	0.22	+1.0
1,245,882	+		DZA65_RS06030	0.22	-2.0
1,245,882	+		DZA65_RS06030	0.22	-1.0
1,245,882	+		DZA65_RS06030	0.22	-1.4
1,245,883	-		DZA65_RS06030	0.22	-0.8
1,245,883	-		DZA65_RS06030	0.22	-0.0
1,245,883	-		DZA65_RS06030	0.22	-0.9
1,245,883	-		DZA65_RS06030	0.22	+0.7
1,245,883	-		DZA65_RS06030	0.22	-0.8
1,245,883	-		DZA65_RS06030	0.22	+0.4
1,245,883	-		DZA65_RS06030	0.22	+2.2
1,245,883	-		DZA65_RS06030	0.22	-1.2
1,245,887	-		DZA65_RS06030	0.22	-0.6
1,245,887	-		DZA65_RS06030	0.22	-0.3
1,245,887	-		DZA65_RS06030	0.22	-0.3
1,245,928	+		DZA65_RS06030	0.24	-0.6
1,245,928	+		DZA65_RS06030	0.24	-0.0
1,245,929	-		DZA65_RS06030	0.24	+0.3
1,245,987	+		DZA65_RS06030	0.27	-0.1
1,245,987	+		DZA65_RS06030	0.27	-2.2
1,245,988	-		DZA65_RS06030	0.27	-1.6
1,245,998	+		DZA65_RS06030	0.28	+1.8
1,245,998	+		DZA65_RS06030	0.28	+0.2
1,245,998	+		DZA65_RS06030	0.28	-1.9
1,246,065	+		DZA65_RS06030	0.31	-0.3
1,246,065	+		DZA65_RS06030	0.31	+0.8
1,246,065	+		DZA65_RS06030	0.31	-1.4
1,246,066	-		DZA65_RS06030	0.31	-2.5
1,246,177	+		DZA65_RS06030	0.37	-0.5
1,246,177	+		DZA65_RS06030	0.37	+1.5
1,246,177	+		DZA65_RS06030	0.37	+0.0
1,246,177	+		DZA65_RS06030	0.37	+0.5
1,246,177	+				-0.9
1,246,177	+		DZA65_RS06030	0.37	+0.8
1,246,177	+		DZA65_RS06030	0.37	-0.3
1,246,177	+		DZA65_RS06030	0.37	-2.9
1,246,177	+		DZA65_RS06030	0.37	-0.8
1,246,177	+		DZA65_RS06030	0.37	-0.3
1,246,177	+		DZA65_RS06030	0.37	-1.9
1,246,178	-		DZA65_RS06030	0.37	-0.9
1,246,178	-		DZA65_RS06030	0.37	-1.6
1,246,178	-				-1.7
1,246,178	-		DZA65_RS06030	0.37	-0.9
1,246,178	-		DZA65_RS06030	0.37	-0.9
1,246,178	-		DZA65_RS06030	0.37	-1.1
1,246,178	-		DZA65_RS06030	0.37	-0.7
1,246,178	-		DZA65_RS06030	0.37	-1.9
1,246,178	-		DZA65_RS06030	0.37	+0.3
1,246,178	-		DZA65_RS06030	0.37	-0.7
1,246,178	-		DZA65_RS06030	0.37	+0.3
1,246,179	+		DZA65_RS06030	0.37	+3.3
1,246,179	+		DZA65_RS06030	0.37	-1.3
1,246,179	+				+0.1
1,246,179	+		DZA65_RS06030	0.37	+1.9
1,246,180	-		DZA65_RS06030	0.37	+0.3
1,246,180	-		DZA65_RS06030	0.37	-2.0
1,246,180	-		DZA65_RS06030	0.37	-1.3
1,246,220	+		DZA65_RS06030	0.40	+0.9
1,246,220	+		DZA65_RS06030	0.40	+0.6
1,246,220	+		DZA65_RS06030	0.40	-0.2
1,246,220	+		DZA65_RS06030	0.40	-1.2
1,246,221	-		DZA65_RS06030	0.40	+0.0
1,246,221	-		DZA65_RS06030	0.40	-0.1
1,246,221	-		DZA65_RS06030	0.40	-1.3
1,246,221	-		DZA65_RS06030	0.40	-3.1
1,246,221	-		DZA65_RS06030	0.40	-0.4
1,246,221	-		DZA65_RS06030	0.40	-0.3
1,246,224	+		DZA65_RS06030	0.40	-0.3
1,246,224	+		DZA65_RS06030	0.40	+0.1
1,246,225	-		DZA65_RS06030	0.40	-2.1
1,246,246	+		DZA65_RS06030	0.41	-0.4
1,246,257	+		DZA65_RS06030	0.42	-1.7
1,246,257	+		DZA65_RS06030	0.42	-1.7
1,246,257	+		DZA65_RS06030	0.42	+0.1
1,246,258	-		DZA65_RS06030	0.42	+1.7
1,246,258	-		DZA65_RS06030	0.42	-0.9
1,246,258	-		DZA65_RS06030	0.42	+0.0
1,246,258	-		DZA65_RS06030	0.42	-0.1
1,246,291	+		DZA65_RS06030	0.43	+0.9
1,246,291	+		DZA65_RS06030	0.43	+1.1
1,246,292	-		DZA65_RS06030	0.43	-1.3
1,246,522	+		DZA65_RS06030	0.56	-0.3
1,246,522	+		DZA65_RS06030	0.56	-1.9
1,246,604	+		DZA65_RS06030	0.60	-0.7
1,246,604	+		DZA65_RS06030	0.60	+0.6
1,246,605	-		DZA65_RS06030	0.60	-0.9
1,246,634	-		DZA65_RS06030	0.62	-1.9
1,246,634	-		DZA65_RS06030	0.62	-3.6
1,246,634	-		DZA65_RS06030	0.62	-1.0
1,246,634	-		DZA65_RS06030	0.62	+0.0
1,246,833	+		DZA65_RS06030	0.72	-0.7
1,246,834	-		DZA65_RS06030	0.72	-0.6
1,246,834	-		DZA65_RS06030	0.72	+0.7
1,246,893	+		DZA65_RS06030	0.75	-0.6
1,246,893	+		DZA65_RS06030	0.75	-1.1
1,246,894	-		DZA65_RS06030	0.75	-0.3
1,247,011	+		DZA65_RS06030	0.82	-1.3
1,247,011	+		DZA65_RS06030	0.82	-3.0
1,247,183	+				-1.2
1,247,183	+				-0.9
1,247,307	+				-0.6
1,247,307	+				-1.3
1,247,308	-				-0.1
1,247,308	-				-1.9
1,247,326	+				+0.2
1,247,327	-				-1.1
1,247,327	-				-2.7
1,247,327	-				-1.8
1,247,354	-				-0.6
1,247,354	-				+0.1
1,247,431	-				-0.3
1,247,431	-				+0.6
1,247,431	-				+1.1
1,247,431	-				-1.8
1,247,431	-				-1.9
1,247,519	+				+0.7
1,247,520	-				-0.3
1,247,520	-				+1.2
1,247,553	-		DZA65_RS06035	0.16	-1.9
1,247,685	+		DZA65_RS06035	0.51	-1.3
1,247,685	+		DZA65_RS06035	0.51	+1.1
1,247,686	-		DZA65_RS06035	0.51	+0.2
1,247,688	+		DZA65_RS06035	0.52	-0.7
1,247,688	+		DZA65_RS06035	0.52	-0.7
1,247,688	+		DZA65_RS06035	0.52	+0.2
1,247,688	+		DZA65_RS06035	0.52	+1.0
1,247,688	+		DZA65_RS06035	0.52	-0.3
1,247,688	+		DZA65_RS06035	0.52	+0.4
1,247,689	-		DZA65_RS06035	0.52	+1.3
1,247,689	-		DZA65_RS06035	0.52	-0.1
1,247,689	-		DZA65_RS06035	0.52	-0.9
1,247,689	-		DZA65_RS06035	0.52	-0.3
1,247,689	-		DZA65_RS06035	0.52	+1.4
1,247,689	-		DZA65_RS06035	0.52	+1.3
1,247,692	-		DZA65_RS06035	0.53	+0.3
1,247,765	-		DZA65_RS06035	0.72	+1.3
1,247,894	+				+1.1
1,247,894	+				+1.7
1,247,895	-				+0.4
1,248,005	-				-0.7
1,248,039	-				-1.1
1,248,123	+		DZA65_RS06040	0.21	-1.3
1,248,152	+		DZA65_RS06040	0.25	+0.1
1,248,153	-		DZA65_RS06040	0.25	-1.1
1,248,153	-		DZA65_RS06040	0.25	+0.7
1,248,153	-		DZA65_RS06040	0.25	-0.1
1,248,153	-		DZA65_RS06040	0.25	+1.7
1,248,155	+		DZA65_RS06040	0.25	-0.5
1,248,155	+		DZA65_RS06040	0.25	-1.5
1,248,156	-		DZA65_RS06040	0.25	-0.2
1,248,156	-		DZA65_RS06040	0.25	-2.1
1,248,316	-		DZA65_RS06040	0.48	+1.5
1,248,334	+		DZA65_RS06040	0.51	-0.9
1,248,334	+		DZA65_RS06040	0.51	+0.5
1,248,347	+		DZA65_RS06040	0.53	-2.1
1,248,348	-		DZA65_RS06040	0.53	-0.9
1,248,348	-		DZA65_RS06040	0.53	-0.3
1,248,348	-		DZA65_RS06040	0.53	+1.1