Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04795

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04785 and DZA65_RS04795 are separated by 866 nucleotidesDZA65_RS04795 and DZA65_RS04800 are separated by 140 nucleotides DZA65_RS04785: DZA65_RS04785 - transcriptional regulator, at 994,076 to 994,297 _RS04785 DZA65_RS04795: DZA65_RS04795 - hypothetical protein, at 995,164 to 995,352 _RS04795 DZA65_RS04800: DZA65_RS04800 - integrase arm-type DNA-binding domain-containing protein, at 995,493 to 996,692 _RS04800 Position (kb) 995 996Strain fitness (log2 ratio) -2 -1 0 1 2 3 4at 994.300 kb on + strandat 994.300 kb on + strandat 994.301 kb on - strandat 994.301 kb on - strandat 994.301 kb on - strandat 994.301 kb on - strandat 994.301 kb on - strandat 994.301 kb on - strandat 994.301 kb on - strandat 994.331 kb on + strandat 994.332 kb on - strandat 994.332 kb on - strandat 994.376 kb on + strandat 994.426 kb on - strandat 994.438 kb on + strandat 994.439 kb on - strandat 994.439 kb on - strandat 994.439 kb on - strandat 994.439 kb on - strandat 994.439 kb on - strandat 994.449 kb on - strandat 994.497 kb on - strandat 994.497 kb on - strandat 994.549 kb on + strandat 994.549 kb on + strandat 994.559 kb on + strandat 994.559 kb on + strandat 994.559 kb on + strandat 994.560 kb on - strandat 994.560 kb on - strandat 994.560 kb on - strandat 994.560 kb on - strandat 994.666 kb on - strandat 994.766 kb on - strandat 994.766 kb on - strandat 994.766 kb on - strandat 994.800 kb on + strandat 994.800 kb on + strandat 994.801 kb on - strandat 994.801 kb on - strandat 994.801 kb on - strandat 995.013 kb on - strandat 995.013 kb on - strandat 995.057 kb on - strandat 995.081 kb on + strandat 995.082 kb on - strandat 995.082 kb on - strandat 995.082 kb on - strandat 995.082 kb on - strandat 995.085 kb on + strandat 995.085 kb on + strandat 995.085 kb on + strandat 995.086 kb on - strandat 995.086 kb on - strandat 995.086 kb on - strandat 995.086 kb on - strandat 995.086 kb on - strandat 995.091 kb on - strandat 995.120 kb on + strandat 995.120 kb on + strandat 995.120 kb on + strandat 995.139 kb on + strandat 995.142 kb on + strandat 995.170 kb on - strandat 995.206 kb on + strand, within DZA65_RS04795at 995.213 kb on + strand, within DZA65_RS04795at 995.214 kb on - strand, within DZA65_RS04795at 995.226 kb on - strand, within DZA65_RS04795at 995.226 kb on - strand, within DZA65_RS04795at 995.267 kb on + strand, within DZA65_RS04795at 995.268 kb on - strand, within DZA65_RS04795at 995.371 kb on - strandat 995.385 kb on + strandat 995.389 kb on - strandat 995.421 kb on - strandat 995.559 kb on - strandat 995.559 kb on - strandat 995.559 kb on - strandat 995.561 kb on - strandat 995.561 kb on - strandat 995.561 kb on - strandat 995.648 kb on + strand, within DZA65_RS04800at 995.655 kb on + strand, within DZA65_RS04800at 995.656 kb on - strand, within DZA65_RS04800at 995.698 kb on + strand, within DZA65_RS04800at 995.699 kb on - strand, within DZA65_RS04800at 995.699 kb on - strand, within DZA65_RS04800at 995.756 kb on + strand, within DZA65_RS04800at 995.756 kb on + strand, within DZA65_RS04800at 995.756 kb on + strand, within DZA65_RS04800at 995.757 kb on - strand, within DZA65_RS04800at 995.757 kb on - strand, within DZA65_RS04800at 995.927 kb on + strand, within DZA65_RS04800at 995.927 kb on + strand, within DZA65_RS04800at 995.927 kb on + strand, within DZA65_RS04800at 995.928 kb on - strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.929 kb on + strand, within DZA65_RS04800at 995.930 kb on - strand, within DZA65_RS04800at 995.930 kb on - strand, within DZA65_RS04800at 995.930 kb on - strand, within DZA65_RS04800at 995.930 kb on - strand, within DZA65_RS04800at 995.930 kb on - strand, within DZA65_RS04800at 996.037 kb on + strand, within DZA65_RS04800at 996.037 kb on + strand, within DZA65_RS04800at 996.037 kb on + strand, within DZA65_RS04800at 996.037 kb on + strand, within DZA65_RS04800at 996.037 kb on + strand, within DZA65_RS04800at 996.037 kb on + strand, within DZA65_RS04800at 996.037 kb on + strand, within DZA65_RS04800at 996.037 kb on + strand, within DZA65_RS04800at 996.038 kb on - strand, within DZA65_RS04800at 996.038 kb on - strand, within DZA65_RS04800at 996.145 kb on + strand, within DZA65_RS04800at 996.145 kb on + strand, within DZA65_RS04800at 996.145 kb on + strand, within DZA65_RS04800at 996.145 kb on + strand, within DZA65_RS04800at 996.230 kb on + strand, within DZA65_RS04800

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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994,300 + +1.7
994,300 + -1.6
994,301 - -0.2
994,301 - -0.3
994,301 - +0.2
994,301 - +0.7
994,301 - -0.0
994,301 - -0.0
994,301 - -0.9
994,331 + +1.2
994,332 - +0.0
994,332 - +0.9
994,376 + +0.4
994,426 - -1.3
994,438 + -2.1
994,439 - -0.7
994,439 - -1.5
994,439 - +0.3
994,439 - +2.6
994,439 - +1.0
994,449 - -0.4
994,497 - +0.6
994,497 - -1.7
994,549 + -1.6
994,549 + -1.6
994,559 + -0.2
994,559 + +0.4
994,559 + +1.2
994,560 - +0.2
994,560 - -0.4
994,560 - +0.4
994,560 - +1.0
994,666 - -0.6
994,766 - +0.2
994,766 - +1.2
994,766 - -1.1
994,800 + +0.5
994,800 + +0.4
994,801 - +1.1
994,801 - +0.4
994,801 - -0.7
995,013 - -1.2
995,013 - -0.0
995,057 - +1.7
995,081 + -0.5
995,082 - -1.0
995,082 - -0.3
995,082 - +0.3
995,082 - +0.8
995,085 + +0.5
995,085 + -0.8
995,085 + +2.9
995,086 - -0.7
995,086 - +0.6
995,086 - -1.7
995,086 - -2.0
995,086 - -1.6
995,091 - +0.3
995,120 + +0.2
995,120 + -1.6
995,120 + -1.1
995,139 + +0.1
995,142 + -1.3
995,170 - -0.0
995,206 + DZA65_RS04795 0.22 -0.4
995,213 + DZA65_RS04795 0.26 -2.6
995,214 - DZA65_RS04795 0.26 -1.3
995,226 - DZA65_RS04795 0.33 -0.3
995,226 - DZA65_RS04795 0.33 +0.7
995,267 + DZA65_RS04795 0.54 -0.1
995,268 - DZA65_RS04795 0.55 +1.2
995,371 - -0.8
995,385 + -1.0
995,389 - -2.6
995,421 - +0.7
995,559 - -0.3
995,559 - -0.3
995,559 - -0.5
995,561 - -1.5
995,561 - -1.1
995,561 - +0.1
995,648 + DZA65_RS04800 0.13 +0.6
995,655 + DZA65_RS04800 0.14 +0.7
995,656 - DZA65_RS04800 0.14 -0.5
995,698 + DZA65_RS04800 0.17 +0.3
995,699 - DZA65_RS04800 0.17 +0.4
995,699 - DZA65_RS04800 0.17 -0.6
995,756 + DZA65_RS04800 0.22 -0.8
995,756 + DZA65_RS04800 0.22 -0.8
995,756 + DZA65_RS04800 0.22 -0.1
995,757 - DZA65_RS04800 0.22 -0.4
995,757 - DZA65_RS04800 0.22 +1.7
995,927 + DZA65_RS04800 0.36 -0.8
995,927 + DZA65_RS04800 0.36 +2.7
995,927 + DZA65_RS04800 0.36 -0.1
995,928 - DZA65_RS04800 0.36 -1.2
995,929 + DZA65_RS04800 0.36 +1.1
995,929 + DZA65_RS04800 0.36 -2.1
995,929 + DZA65_RS04800 0.36 -1.8
995,929 + DZA65_RS04800 0.36 -2.6
995,929 + DZA65_RS04800 0.36 -0.8
995,929 + DZA65_RS04800 0.36 +0.7
995,929 + DZA65_RS04800 0.36 -0.3
995,929 + DZA65_RS04800 0.36 +0.1
995,929 + DZA65_RS04800 0.36 +0.4
995,929 + DZA65_RS04800 0.36 -2.1
995,929 + DZA65_RS04800 0.36 -2.3
995,929 + DZA65_RS04800 0.36 -2.7
995,929 + DZA65_RS04800 0.36 -0.3
995,930 - DZA65_RS04800 0.36 -1.4
995,930 - DZA65_RS04800 0.36 +1.5
995,930 - DZA65_RS04800 0.36 -0.2
995,930 - DZA65_RS04800 0.36 -2.3
995,930 - DZA65_RS04800 0.36 +0.4
996,037 + DZA65_RS04800 0.45 +1.0
996,037 + DZA65_RS04800 0.45 -0.7
996,037 + DZA65_RS04800 0.45 +1.5
996,037 + DZA65_RS04800 0.45 -0.3
996,037 + DZA65_RS04800 0.45 -0.6
996,037 + DZA65_RS04800 0.45 -0.6
996,037 + DZA65_RS04800 0.45 +0.9
996,037 + DZA65_RS04800 0.45 -0.2
996,038 - DZA65_RS04800 0.45 +0.7
996,038 - DZA65_RS04800 0.45 -0.3
996,145 + DZA65_RS04800 0.54 -0.4
996,145 + DZA65_RS04800 0.54 +1.5
996,145 + DZA65_RS04800 0.54 -0.4
996,145 + DZA65_RS04800 0.54 +4.6
996,230 + DZA65_RS04800 0.61 +0.0

Or see this region's nucleotide sequence