Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04430

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04425 and DZA65_RS04430 are separated by 106 nucleotidesDZA65_RS04430 and DZA65_RS04440 are separated by 249 nucleotidesDZA65_RS04440 and DZA65_RS04445 are separated by 30 nucleotides DZA65_RS04425: DZA65_RS04425 - LysR family transcriptional regulator, at 924,707 to 925,573 _RS04425 DZA65_RS04430: DZA65_RS04430 - multidrug/biocide efflux PACE transporter, at 925,680 to 926,147 _RS04430 DZA65_RS04440: DZA65_RS04440 - DNA oxidative demethylase AlkB, at 926,397 to 927,050 _RS04440 DZA65_RS04445: DZA65_RS04445 - FAD-dependent oxidoreductase, at 927,081 to 928,652 _RS04445 Position (kb) 925 926 927Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 924.709 kb on - strandat 924.709 kb on - strandat 924.731 kb on - strandat 924.736 kb on + strandat 924.743 kb on + strandat 924.743 kb on + strandat 924.743 kb on + strandat 924.743 kb on + strandat 924.846 kb on + strand, within DZA65_RS04425at 924.846 kb on + strand, within DZA65_RS04425at 924.875 kb on - strand, within DZA65_RS04425at 924.919 kb on - strand, within DZA65_RS04425at 924.970 kb on + strand, within DZA65_RS04425at 924.971 kb on - strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.972 kb on + strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strandat 924.973 kb on - strand, within DZA65_RS04425at 924.973 kb on - strand, within DZA65_RS04425at 925.027 kb on + strand, within DZA65_RS04425at 925.027 kb on + strand, within DZA65_RS04425at 925.027 kb on + strand, within DZA65_RS04425at 925.027 kb on + strand, within DZA65_RS04425at 925.028 kb on - strand, within DZA65_RS04425at 925.059 kb on + strand, within DZA65_RS04425at 925.059 kb on + strand, within DZA65_RS04425at 925.059 kb on + strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.060 kb on - strand, within DZA65_RS04425at 925.169 kb on + strand, within DZA65_RS04425at 925.169 kb on + strand, within DZA65_RS04425at 925.251 kb on + strand, within DZA65_RS04425at 925.252 kb on - strand, within DZA65_RS04425at 925.525 kb on + strandat 925.611 kb on - strandat 925.623 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.679 kb on + strandat 925.680 kb on - strandat 925.790 kb on - strand, within DZA65_RS04430at 925.878 kb on + strand, within DZA65_RS04430at 925.879 kb on - strand, within DZA65_RS04430at 925.879 kb on - strand, within DZA65_RS04430at 925.879 kb on - strand, within DZA65_RS04430at 925.973 kb on + strand, within DZA65_RS04430at 925.974 kb on - strand, within DZA65_RS04430at 926.012 kb on + strand, within DZA65_RS04430at 926.013 kb on - strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.070 kb on + strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.071 kb on - strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.072 kb on + strand, within DZA65_RS04430at 926.073 kb on - strandat 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.082 kb on + strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.083 kb on - strand, within DZA65_RS04430at 926.146 kb on - strandat 926.180 kb on - strandat 926.310 kb on - strandat 926.325 kb on + strandat 926.359 kb on + strandat 926.359 kb on + strandat 926.359 kb on + strandat 926.360 kb on - strandat 926.360 kb on - strandat 926.360 kb on - strandat 926.570 kb on + strand, within DZA65_RS04440at 926.570 kb on + strand, within DZA65_RS04440at 926.570 kb on + strandat 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.571 kb on - strand, within DZA65_RS04440at 926.637 kb on + strand, within DZA65_RS04440at 926.638 kb on - strand, within DZA65_RS04440at 926.958 kb on + strand, within DZA65_RS04440at 926.958 kb on + strand, within DZA65_RS04440at 926.959 kb on - strand, within DZA65_RS04440at 926.959 kb on - strand, within DZA65_RS04440at 926.961 kb on + strand, within DZA65_RS04440at 926.961 kb on + strand, within DZA65_RS04440at 926.962 kb on - strand, within DZA65_RS04440at 926.962 kb on - strand, within DZA65_RS04440at 926.962 kb on - strand, within DZA65_RS04440at 927.026 kb on + strandat 927.027 kb on - strandat 927.027 kb on - strandat 927.027 kb on - strandat 927.082 kb on + strandat 927.103 kb on + strandat 927.103 kb on + strandat 927.104 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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924,709 - -0.8
924,709 - -0.6
924,731 - -0.2
924,736 + -0.2
924,743 + +1.1
924,743 + +0.6
924,743 + -0.6
924,743 + -2.4
924,846 + DZA65_RS04425 0.16 +0.3
924,846 + DZA65_RS04425 0.16 +0.3
924,875 - DZA65_RS04425 0.19 -1.8
924,919 - DZA65_RS04425 0.24 +1.8
924,970 + DZA65_RS04425 0.30 -0.2
924,971 - DZA65_RS04425 0.30 -0.8
924,972 + DZA65_RS04425 0.31 +0.2
924,972 + DZA65_RS04425 0.31 -1.9
924,972 + DZA65_RS04425 0.31 +0.7
924,972 + DZA65_RS04425 0.31 +0.9
924,972 + DZA65_RS04425 0.31 +1.1
924,972 + DZA65_RS04425 0.31 +0.3
924,972 + DZA65_RS04425 0.31 -1.2
924,972 + DZA65_RS04425 0.31 +0.0
924,972 + DZA65_RS04425 0.31 -0.2
924,972 + DZA65_RS04425 0.31 +0.2
924,972 + DZA65_RS04425 0.31 -1.4
924,972 + DZA65_RS04425 0.31 +0.6
924,972 + DZA65_RS04425 0.31 +0.4
924,972 + DZA65_RS04425 0.31 -1.2
924,972 + DZA65_RS04425 0.31 -0.5
924,973 - DZA65_RS04425 0.31 -0.8
924,973 - DZA65_RS04425 0.31 -0.6
924,973 - DZA65_RS04425 0.31 +0.8
924,973 - DZA65_RS04425 0.31 -1.7
924,973 - DZA65_RS04425 0.31 -1.2
924,973 - DZA65_RS04425 0.31 -0.6
924,973 - DZA65_RS04425 0.31 +0.1
924,973 - DZA65_RS04425 0.31 -2.1
924,973 - DZA65_RS04425 0.31 +0.3
924,973 - DZA65_RS04425 0.31 +0.1
924,973 - DZA65_RS04425 0.31 +0.6
924,973 - DZA65_RS04425 0.31 -0.3
924,973 - DZA65_RS04425 0.31 +1.4
924,973 - +2.3
924,973 - DZA65_RS04425 0.31 +0.3
924,973 - DZA65_RS04425 0.31 +2.0
925,027 + DZA65_RS04425 0.37 -0.9
925,027 + DZA65_RS04425 0.37 +0.1
925,027 + DZA65_RS04425 0.37 +0.3
925,027 + DZA65_RS04425 0.37 -2.0
925,028 - DZA65_RS04425 0.37 -0.2
925,059 + DZA65_RS04425 0.41 -1.2
925,059 + DZA65_RS04425 0.41 +0.2
925,059 + DZA65_RS04425 0.41 +0.5
925,060 - DZA65_RS04425 0.41 +0.8
925,060 - DZA65_RS04425 0.41 +0.3
925,060 - DZA65_RS04425 0.41 +0.1
925,060 - DZA65_RS04425 0.41 +0.5
925,060 - DZA65_RS04425 0.41 -0.6
925,060 - DZA65_RS04425 0.41 +0.8
925,060 - DZA65_RS04425 0.41 -0.2
925,169 + DZA65_RS04425 0.53 +2.2
925,169 + DZA65_RS04425 0.53 +0.8
925,251 + DZA65_RS04425 0.63 +0.4
925,252 - DZA65_RS04425 0.63 +0.2
925,525 + -0.2
925,611 - +0.2
925,623 + +0.1
925,679 + -0.4
925,679 + -0.8
925,679 + +1.2
925,679 + -0.8
925,679 + -0.8
925,679 + +0.4
925,679 + -0.2
925,680 - +1.4
925,790 - DZA65_RS04430 0.24 -0.2
925,878 + DZA65_RS04430 0.42 -0.1
925,879 - DZA65_RS04430 0.43 +0.6
925,879 - DZA65_RS04430 0.43 +0.0
925,879 - DZA65_RS04430 0.43 +1.4
925,973 + DZA65_RS04430 0.63 -0.0
925,974 - DZA65_RS04430 0.63 -0.8
926,012 + DZA65_RS04430 0.71 +2.5
926,013 - DZA65_RS04430 0.71 +0.5
926,070 + DZA65_RS04430 0.83 -0.8
926,070 + DZA65_RS04430 0.83 +1.8
926,070 + DZA65_RS04430 0.83 -0.0
926,070 + DZA65_RS04430 0.83 +1.3
926,070 + DZA65_RS04430 0.83 -0.8
926,071 - DZA65_RS04430 0.84 +0.8
926,071 - DZA65_RS04430 0.84 -1.0
926,071 - DZA65_RS04430 0.84 +0.0
926,071 - DZA65_RS04430 0.84 +0.9
926,071 - DZA65_RS04430 0.84 +0.6
926,071 - DZA65_RS04430 0.84 +0.0
926,072 + DZA65_RS04430 0.84 +0.2
926,072 + DZA65_RS04430 0.84 +0.3
926,072 + DZA65_RS04430 0.84 -0.1
926,072 + DZA65_RS04430 0.84 +1.0
926,072 + DZA65_RS04430 0.84 +0.5
926,073 - -0.2
926,082 + DZA65_RS04430 0.86 -1.6
926,082 + DZA65_RS04430 0.86 +0.9
926,082 + DZA65_RS04430 0.86 +1.8
926,082 + DZA65_RS04430 0.86 +0.8
926,082 + DZA65_RS04430 0.86 -0.1
926,082 + DZA65_RS04430 0.86 +1.4
926,082 + DZA65_RS04430 0.86 -0.8
926,083 - DZA65_RS04430 0.86 -1.6
926,083 - DZA65_RS04430 0.86 -0.0
926,083 - DZA65_RS04430 0.86 +1.1
926,083 - DZA65_RS04430 0.86 +1.6
926,083 - DZA65_RS04430 0.86 +0.9
926,146 - -3.1
926,180 - +0.7
926,310 - +1.1
926,325 + -1.2
926,359 + -0.4
926,359 + +1.3
926,359 + +0.3
926,360 - +1.9
926,360 - +0.8
926,360 - -0.2
926,570 + DZA65_RS04440 0.26 -0.7
926,570 + DZA65_RS04440 0.26 -1.9
926,570 + +0.8
926,571 - DZA65_RS04440 0.27 -1.2
926,571 - DZA65_RS04440 0.27 +1.7
926,571 - DZA65_RS04440 0.27 +0.0
926,571 - DZA65_RS04440 0.27 -0.2
926,571 - DZA65_RS04440 0.27 +0.1
926,571 - DZA65_RS04440 0.27 +2.6
926,571 - DZA65_RS04440 0.27 +0.3
926,571 - DZA65_RS04440 0.27 +1.3
926,571 - DZA65_RS04440 0.27 +1.9
926,637 + DZA65_RS04440 0.37 -1.2
926,638 - DZA65_RS04440 0.37 +0.6
926,958 + DZA65_RS04440 0.86 +1.0
926,958 + DZA65_RS04440 0.86 -0.2
926,959 - DZA65_RS04440 0.86 +0.3
926,959 - DZA65_RS04440 0.86 +0.2
926,961 + DZA65_RS04440 0.86 +0.6
926,961 + DZA65_RS04440 0.86 -1.6
926,962 - DZA65_RS04440 0.86 +0.5
926,962 - DZA65_RS04440 0.86 -0.1
926,962 - DZA65_RS04440 0.86 -2.1
927,026 + +0.8
927,027 - +1.8
927,027 - -1.6
927,027 - +0.6
927,082 + -1.8
927,103 + -0.4
927,103 + -1.8
927,104 - +1.1

Or see this region's nucleotide sequence