Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04345 and DZA65_RS04350 are separated by 307 nucleotides DZA65_RS04350 and DZA65_RS04355 are separated by 41 nucleotides DZA65_RS04355 and DZA65_RS04360 are separated by 47 nucleotides DZA65_RS04360 and DZA65_RS04370 are separated by 424 nucleotides
DZA65_RS04345: DZA65_RS04345 - helix-turn-helix transcriptional regulator, at 907,390 to 907,953
_RS04345
DZA65_RS04350: DZA65_RS04350 - PTS glucose transporter subunit IIA, at 908,261 to 908,770
_RS04350
DZA65_RS04355: DZA65_RS04355 - phosphoenolpyruvate-protein phosphotransferase PtsI, at 908,812 to 910,539
_RS04355
DZA65_RS04360: DZA65_RS04360 - phosphocarrier protein Hpr, at 910,587 to 910,844
_RS04360
DZA65_RS04370: DZA65_RS04370 - cysteine synthase A, at 911,269 to 912,237
_RS04370
Position (kb) 908
909
910
911 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 907.812 kb on + strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.813 kb on - strand, within DZA65_RS04345 at 907.863 kb on - strand, within DZA65_RS04345 at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.944 kb on + strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.945 kb on - strand at 907.971 kb on + strand at 907.971 kb on + strand at 907.972 kb on - strand at 907.972 kb on - strand at 907.974 kb on + strand at 907.974 kb on + strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.975 kb on - strand at 907.983 kb on - strand at 907.983 kb on - strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.028 kb on + strand at 908.029 kb on - strand at 908.029 kb on - strand at 908.029 kb on - strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.032 kb on + strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.033 kb on - strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.036 kb on + strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.037 kb on - strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.040 kb on + strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.041 kb on - strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.044 kb on + strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.045 kb on - strand at 908.121 kb on + strand at 908.121 kb on + strand at 908.122 kb on - strand at 908.181 kb on + strand at 908.181 kb on + strand at 908.182 kb on - strand at 908.198 kb on + strand at 908.208 kb on + strand at 908.208 kb on + strand at 908.208 kb on + strand at 908.262 kb on + strand at 908.262 kb on + strand at 908.262 kb on + strand at 908.564 kb on - strand, within DZA65_RS04350 at 908.614 kb on + strand, within DZA65_RS04350 at 908.648 kb on + strand, within DZA65_RS04350 at 908.782 kb on - strand at 908.792 kb on - strand at 908.845 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.857 kb on + strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.858 kb on - strand at 908.881 kb on + strand at 908.915 kb on + strand at 908.915 kb on + strand at 908.916 kb on - strand at 908.916 kb on - strand at 908.916 kb on - strand at 908.916 kb on - strand at 909.001 kb on + strand, within DZA65_RS04355 at 909.001 kb on + strand, within DZA65_RS04355 at 909.001 kb on + strand, within DZA65_RS04355 at 909.001 kb on + strand, within DZA65_RS04355 at 909.001 kb on + strand, within DZA65_RS04355 at 909.002 kb on - strand, within DZA65_RS04355 at 909.002 kb on - strand, within DZA65_RS04355 at 909.006 kb on + strand, within DZA65_RS04355 at 909.006 kb on + strand, within DZA65_RS04355 at 909.006 kb on + strand, within DZA65_RS04355 at 909.007 kb on - strand, within DZA65_RS04355 at 909.007 kb on - strand, within DZA65_RS04355 at 909.007 kb on - strand, within DZA65_RS04355 at 909.117 kb on + strand, within DZA65_RS04355 at 909.118 kb on - strand, within DZA65_RS04355 at 909.119 kb on + strand at 909.119 kb on + strand, within DZA65_RS04355 at 909.119 kb on + strand, within DZA65_RS04355 at 909.119 kb on + strand, within DZA65_RS04355 at 909.119 kb on + strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.120 kb on - strand, within DZA65_RS04355 at 909.151 kb on + strand, within DZA65_RS04355 at 909.162 kb on + strand, within DZA65_RS04355 at 909.162 kb on + strand, within DZA65_RS04355 at 909.162 kb on + strand, within DZA65_RS04355 at 909.162 kb on + strand, within DZA65_RS04355 at 909.163 kb on - strand, within DZA65_RS04355 at 909.163 kb on - strand, within DZA65_RS04355 at 909.164 kb on + strand, within DZA65_RS04355 at 909.165 kb on - strand, within DZA65_RS04355 at 909.172 kb on + strand, within DZA65_RS04355 at 909.173 kb on - strand, within DZA65_RS04355 at 909.173 kb on - strand, within DZA65_RS04355 at 909.339 kb on + strand, within DZA65_RS04355 at 909.340 kb on - strand, within DZA65_RS04355 at 909.353 kb on - strand, within DZA65_RS04355 at 909.456 kb on + strand, within DZA65_RS04355 at 909.457 kb on - strand, within DZA65_RS04355 at 909.509 kb on + strand, within DZA65_RS04355 at 909.509 kb on + strand, within DZA65_RS04355 at 909.509 kb on + strand, within DZA65_RS04355 at 909.510 kb on - strand, within DZA65_RS04355 at 909.510 kb on - strand, within DZA65_RS04355 at 909.510 kb on - strand, within DZA65_RS04355 at 909.591 kb on - strand, within DZA65_RS04355 at 909.656 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.803 kb on + strand, within DZA65_RS04355 at 909.857 kb on + strand, within DZA65_RS04355 at 909.858 kb on - strand, within DZA65_RS04355 at 909.872 kb on - strand, within DZA65_RS04355 at 909.972 kb on + strand, within DZA65_RS04355 at 909.973 kb on - strand, within DZA65_RS04355 at 910.152 kb on + strand, within DZA65_RS04355 at 910.153 kb on - strand, within DZA65_RS04355 at 910.153 kb on - strand, within DZA65_RS04355 at 910.175 kb on + strand, within DZA65_RS04355 at 910.176 kb on - strand, within DZA65_RS04355 at 910.311 kb on + strand, within DZA65_RS04355 at 910.311 kb on + strand, within DZA65_RS04355 at 910.312 kb on - strand, within DZA65_RS04355 at 910.371 kb on + strand at 910.486 kb on + strand at 910.519 kb on + strand at 910.522 kb on + strand at 910.523 kb on - strand at 910.523 kb on - strand at 910.523 kb on - strand at 910.525 kb on + strand at 910.525 kb on + strand at 910.526 kb on - strand at 910.550 kb on + strand at 910.551 kb on - strand at 910.551 kb on - strand at 910.551 kb on - strand at 910.827 kb on + strand at 910.828 kb on - strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.900 kb on + strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.901 kb on - strand at 910.904 kb on + strand at 910.904 kb on + strand at 910.905 kb on - strand at 910.915 kb on - strand at 910.915 kb on - strand at 910.915 kb on - strand at 911.068 kb on + strand at 911.068 kb on + strand at 911.069 kb on - strand at 911.074 kb on + strand at 911.074 kb on + strand at 911.075 kb on - strand at 911.095 kb on - strand at 911.135 kb on - strand at 911.161 kb on - strand at 911.161 kb on - strand at 911.161 kb on - strand at 911.216 kb on + strand at 911.251 kb on + strand at 911.263 kb on + strand at 911.264 kb on - strand at 911.270 kb on + strand at 911.270 kb on + strand at 911.271 kb on - strand at 911.271 kb on - strand at 911.316 kb on + strand at 911.350 kb on + strand at 911.350 kb on + strand at 911.351 kb on - strand at 911.538 kb on + strand, within DZA65_RS04370 at 911.539 kb on - strand, within DZA65_RS04370
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 907,812 + DZA65_RS04345 0.75 -0.4 907,813 - DZA65_RS04345 0.75 -0.4 907,813 - DZA65_RS04345 0.75 +0.3 907,813 - DZA65_RS04345 0.75 -1.2 907,863 - DZA65_RS04345 0.84 +1.1 907,944 + +1.2 907,944 + +0.3 907,944 + +0.0 907,944 + -0.8 907,944 + +0.2 907,944 + +0.4 907,944 + +0.3 907,944 + -0.2 907,944 + +0.3 907,945 - +2.2 907,945 - +0.2 907,945 - -2.8 907,945 - +1.0 907,945 - -0.5 907,945 - -0.4 907,945 - -0.7 907,971 + -2.0 907,971 + +1.2 907,972 - -0.2 907,972 - +0.5 907,974 + +0.2 907,974 + +0.0 907,975 - -0.8 907,975 - +0.8 907,975 - +1.8 907,975 - +0.4 907,975 - -1.6 907,983 - -0.2 907,983 - -1.3 908,028 + +0.8 908,028 + -1.0 908,028 + -0.8 908,028 + +1.6 908,029 - +0.2 908,029 - +1.3 908,029 - +1.3 908,032 + +1.0 908,032 + -0.6 908,032 + -1.4 908,032 + -0.4 908,032 + -0.6 908,032 + -0.4 908,032 + +0.1 908,032 + -1.7 908,032 + +0.2 908,032 + -1.4 908,032 + -0.2 908,032 + -0.0 908,032 + +0.4 908,032 + -0.8 908,032 + +1.2 908,032 + +0.8 908,032 + -0.2 908,032 + +0.7 908,032 + -0.8 908,032 + -0.8 908,032 + -0.2 908,032 + +1.0 908,032 + +0.5 908,032 + +0.6 908,033 - +1.0 908,033 - +1.2 908,033 - -1.2 908,033 - +0.8 908,033 - -0.6 908,033 - +0.2 908,033 - -0.1 908,033 - +0.6 908,033 - -0.4 908,033 - +2.0 908,033 - +0.3 908,033 - -1.2 908,033 - -1.0 908,036 + -0.4 908,036 + +0.8 908,036 + +1.8 908,036 + -0.8 908,036 + +1.0 908,036 + +0.1 908,036 + -0.4 908,036 + -0.2 908,036 + +0.0 908,036 + -0.6 908,036 + -0.1 908,036 + +1.0 908,036 + -0.2 908,037 - -1.6 908,037 - -0.7 908,037 - -0.8 908,037 - -2.2 908,037 - +0.4 908,037 - -1.2 908,040 + -2.0 908,040 + -1.6 908,040 + +0.1 908,040 + +0.2 908,040 + +0.8 908,040 + +0.8 908,040 + +0.1 908,040 + -0.8 908,040 + -1.6 908,040 + +1.3 908,040 + -1.2 908,040 + -1.6 908,041 - -1.2 908,041 - +1.0 908,041 - +1.4 908,041 - -1.4 908,041 - +0.6 908,041 - -0.2 908,041 - -2.0 908,041 - +0.4 908,044 + -1.9 908,044 + -0.0 908,044 + -0.4 908,044 + -0.2 908,045 - -0.5 908,045 - -0.2 908,045 - -0.3 908,045 - -1.6 908,121 + +0.4 908,121 + +0.1 908,122 - -1.7 908,181 + -0.3 908,181 + -1.8 908,182 - -0.7 908,198 + -0.8 908,208 + +0.4 908,208 + +0.0 908,208 + +0.2 908,262 + -1.2 908,262 + -1.6 908,262 + +0.6 908,564 - DZA65_RS04350 0.59 +0.6 908,614 + DZA65_RS04350 0.69 -0.8 908,648 + DZA65_RS04350 0.76 -0.2 908,782 - -2.1 908,792 - -1.6 908,845 + +0.8 908,857 + +0.9 908,857 + +0.1 908,857 + -1.2 908,857 + -0.2 908,857 + -2.6 908,857 + -0.2 908,858 - -1.0 908,858 - -1.4 908,858 - -0.9 908,858 - +0.9 908,858 - +0.6 908,881 + +1.8 908,915 + -1.6 908,915 + +1.2 908,916 - -0.4 908,916 - +0.3 908,916 - -0.5 908,916 - +2.8 909,001 + DZA65_RS04355 0.11 +0.5 909,001 + DZA65_RS04355 0.11 -0.1 909,001 + DZA65_RS04355 0.11 -0.2 909,001 + DZA65_RS04355 0.11 +0.0 909,001 + DZA65_RS04355 0.11 -1.6 909,002 - DZA65_RS04355 0.11 -2.0 909,002 - DZA65_RS04355 0.11 -0.6 909,006 + DZA65_RS04355 0.11 +0.8 909,006 + DZA65_RS04355 0.11 +1.2 909,006 + DZA65_RS04355 0.11 -2.0 909,007 - DZA65_RS04355 0.11 -2.4 909,007 - DZA65_RS04355 0.11 -0.8 909,007 - DZA65_RS04355 0.11 -1.2 909,117 + DZA65_RS04355 0.18 -1.0 909,118 - DZA65_RS04355 0.18 +0.3 909,119 + +1.8 909,119 + DZA65_RS04355 0.18 -2.0 909,119 + DZA65_RS04355 0.18 -1.6 909,119 + DZA65_RS04355 0.18 -0.2 909,119 + DZA65_RS04355 0.18 +2.3 909,120 - DZA65_RS04355 0.18 -0.1 909,120 - DZA65_RS04355 0.18 -1.8 909,120 - DZA65_RS04355 0.18 -0.4 909,120 - DZA65_RS04355 0.18 +1.6 909,120 - DZA65_RS04355 0.18 -0.2 909,120 - DZA65_RS04355 0.18 +0.2 909,151 + DZA65_RS04355 0.20 -0.6 909,162 + DZA65_RS04355 0.20 -1.9 909,162 + DZA65_RS04355 0.20 -2.0 909,162 + DZA65_RS04355 0.20 -0.0 909,162 + DZA65_RS04355 0.20 -2.7 909,163 - DZA65_RS04355 0.20 -2.6 909,163 - DZA65_RS04355 0.20 -0.8 909,164 + DZA65_RS04355 0.20 -2.4 909,165 - DZA65_RS04355 0.20 -1.4 909,172 + DZA65_RS04355 0.21 -1.8 909,173 - DZA65_RS04355 0.21 -0.8 909,173 - DZA65_RS04355 0.21 -2.7 909,339 + DZA65_RS04355 0.30 -1.1 909,340 - DZA65_RS04355 0.31 -0.8 909,353 - DZA65_RS04355 0.31 -0.7 909,456 + DZA65_RS04355 0.37 -0.2 909,457 - DZA65_RS04355 0.37 +0.6 909,509 + DZA65_RS04355 0.40 +0.2 909,509 + DZA65_RS04355 0.40 -0.2 909,509 + DZA65_RS04355 0.40 +0.2 909,510 - DZA65_RS04355 0.40 -0.9 909,510 - DZA65_RS04355 0.40 -1.8 909,510 - DZA65_RS04355 0.40 +1.5 909,591 - DZA65_RS04355 0.45 -1.2 909,656 + DZA65_RS04355 0.49 -0.2 909,803 + DZA65_RS04355 0.57 -0.5 909,803 + DZA65_RS04355 0.57 -2.2 909,803 + DZA65_RS04355 0.57 +0.0 909,803 + DZA65_RS04355 0.57 +0.0 909,803 + DZA65_RS04355 0.57 +0.6 909,803 + DZA65_RS04355 0.57 +0.8 909,857 + DZA65_RS04355 0.60 +1.2 909,858 - DZA65_RS04355 0.61 -0.8 909,872 - DZA65_RS04355 0.61 -0.0 909,972 + DZA65_RS04355 0.67 +0.6 909,973 - DZA65_RS04355 0.67 +0.6 910,152 + DZA65_RS04355 0.78 -2.0 910,153 - DZA65_RS04355 0.78 -0.9 910,153 - DZA65_RS04355 0.78 -2.2 910,175 + DZA65_RS04355 0.79 -0.2 910,176 - DZA65_RS04355 0.79 -2.6 910,311 + DZA65_RS04355 0.87 +0.8 910,311 + DZA65_RS04355 0.87 -0.9 910,312 - DZA65_RS04355 0.87 -1.7 910,371 + -2.2 910,486 + -0.0 910,519 + -0.8 910,522 + +0.1 910,523 - -0.2 910,523 - -1.0 910,523 - +0.3 910,525 + +1.8 910,525 + -0.2 910,526 - -1.2 910,550 + -2.0 910,551 - -2.2 910,551 - -2.4 910,551 - -0.8 910,827 + -0.2 910,828 - +0.8 910,900 + +0.2 910,900 + -0.2 910,900 + +1.5 910,900 + +0.6 910,901 - +0.3 910,901 - +1.0 910,901 - -1.2 910,901 - +0.8 910,904 + -1.6 910,904 + +0.8 910,905 - +0.7 910,915 - +0.5 910,915 - -0.2 910,915 - +0.2 911,068 + -1.2 911,068 + -0.4 911,069 - -0.2 911,074 + -1.2 911,074 + +0.5 911,075 - +0.2 911,095 - -1.6 911,135 - -1.6 911,161 - +0.1 911,161 - -1.8 911,161 - -0.7 911,216 + -0.8 911,251 + +1.1 911,263 + -1.1 911,264 - +0.0 911,270 + -0.4 911,270 + -1.2 911,271 - +0.6 911,271 - -0.6 911,316 + -1.2 911,350 + -1.6 911,350 + -2.8 911,351 - -1.2 911,538 + DZA65_RS04370 0.28 +0.3 911,539 - DZA65_RS04370 0.28 +0.5
Or see this region's nucleotide sequence