Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS04090

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS04085 and DZA65_RS04090 are separated by 54 nucleotidesDZA65_RS04090 and DZA65_RS04095 are separated by 3 nucleotidesDZA65_RS04095 and DZA65_RS04100 are separated by 96 nucleotides DZA65_RS04085: DZA65_RS04085 - phage capsid scaffolding protein, at 863,076 to 863,912 _RS04085 DZA65_RS04090: DZA65_RS04090 - phage major capsid protein, P2 family, at 863,967 to 864,995 _RS04090 DZA65_RS04095: DZA65_RS04095 - terminase, at 864,999 to 865,700 _RS04095 DZA65_RS04100: DZA65_RS04100 - head completion/stabilization protein, at 865,797 to 866,249 _RS04100 Position (kb) 863 864 865Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3 4 5at 863.033 kb on - strandat 863.042 kb on + strandat 863.042 kb on + strandat 863.069 kb on + strandat 863.073 kb on + strandat 863.073 kb on + strandat 863.073 kb on + strandat 863.073 kb on + strandat 863.074 kb on - strandat 863.074 kb on - strandat 863.074 kb on - strandat 863.074 kb on - strandat 863.074 kb on - strandat 863.074 kb on - strandat 863.074 kb on - strandat 863.074 kb on - strandat 863.074 kb on - strandat 863.087 kb on - strandat 863.087 kb on - strandat 863.094 kb on - strandat 863.132 kb on + strandat 863.133 kb on - strandat 863.179 kb on - strand, within DZA65_RS04085at 863.179 kb on - strand, within DZA65_RS04085at 863.193 kb on + strand, within DZA65_RS04085at 863.193 kb on + strand, within DZA65_RS04085at 863.193 kb on + strand, within DZA65_RS04085at 863.194 kb on - strand, within DZA65_RS04085at 863.194 kb on - strand, within DZA65_RS04085at 863.194 kb on - strand, within DZA65_RS04085at 863.248 kb on + strand, within DZA65_RS04085at 863.248 kb on + strandat 863.257 kb on + strand, within DZA65_RS04085at 863.257 kb on + strand, within DZA65_RS04085at 863.258 kb on - strand, within DZA65_RS04085at 863.258 kb on - strand, within DZA65_RS04085at 863.258 kb on - strandat 863.258 kb on - strand, within DZA65_RS04085at 863.305 kb on + strand, within DZA65_RS04085at 863.305 kb on + strand, within DZA65_RS04085at 863.323 kb on + strand, within DZA65_RS04085at 863.324 kb on - strand, within DZA65_RS04085at 863.324 kb on - strand, within DZA65_RS04085at 863.324 kb on - strand, within DZA65_RS04085at 863.350 kb on + strand, within DZA65_RS04085at 863.372 kb on - strand, within DZA65_RS04085at 863.409 kb on + strand, within DZA65_RS04085at 863.410 kb on - strand, within DZA65_RS04085at 863.464 kb on + strand, within DZA65_RS04085at 863.475 kb on - strand, within DZA65_RS04085at 863.475 kb on - strand, within DZA65_RS04085at 863.475 kb on - strand, within DZA65_RS04085at 863.506 kb on + strand, within DZA65_RS04085at 863.507 kb on - strand, within DZA65_RS04085at 863.530 kb on + strand, within DZA65_RS04085at 863.531 kb on - strand, within DZA65_RS04085at 863.549 kb on + strand, within DZA65_RS04085at 863.549 kb on + strand, within DZA65_RS04085at 863.549 kb on + strand, within DZA65_RS04085at 863.549 kb on + strand, within DZA65_RS04085at 863.549 kb on + strand, within DZA65_RS04085at 863.550 kb on - strand, within DZA65_RS04085at 863.550 kb on - strand, within DZA65_RS04085at 863.562 kb on - strand, within DZA65_RS04085at 863.562 kb on - strand, within DZA65_RS04085at 863.573 kb on + strand, within DZA65_RS04085at 863.574 kb on - strand, within DZA65_RS04085at 863.574 kb on - strand, within DZA65_RS04085at 863.588 kb on + strand, within DZA65_RS04085at 863.589 kb on - strand, within DZA65_RS04085at 863.589 kb on - strand, within DZA65_RS04085at 863.646 kb on - strand, within DZA65_RS04085at 863.693 kb on - strand, within DZA65_RS04085at 863.753 kb on + strand, within DZA65_RS04085at 863.808 kb on - strand, within DZA65_RS04085at 863.852 kb on + strandat 863.853 kb on - strandat 863.859 kb on - strandat 863.910 kb on + strandat 863.910 kb on + strandat 863.911 kb on - strandat 863.911 kb on - strandat 863.943 kb on - strandat 863.966 kb on + strandat 863.966 kb on + strandat 863.967 kb on - strandat 863.967 kb on - strandat 863.975 kb on - strandat 863.994 kb on + strandat 864.007 kb on - strandat 864.007 kb on - strandat 864.252 kb on + strand, within DZA65_RS04090at 864.252 kb on + strand, within DZA65_RS04090at 864.252 kb on + strand, within DZA65_RS04090at 864.252 kb on + strand, within DZA65_RS04090at 864.253 kb on - strand, within DZA65_RS04090at 864.253 kb on - strand, within DZA65_RS04090at 864.253 kb on - strand, within DZA65_RS04090at 864.253 kb on - strand, within DZA65_RS04090at 864.254 kb on + strand, within DZA65_RS04090at 864.254 kb on + strand, within DZA65_RS04090at 864.254 kb on + strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.255 kb on - strand, within DZA65_RS04090at 864.383 kb on + strand, within DZA65_RS04090at 864.512 kb on + strand, within DZA65_RS04090at 864.513 kb on - strand, within DZA65_RS04090at 864.529 kb on + strandat 864.549 kb on + strand, within DZA65_RS04090at 864.550 kb on - strand, within DZA65_RS04090at 864.666 kb on + strand, within DZA65_RS04090at 864.765 kb on - strand, within DZA65_RS04090at 864.765 kb on - strand, within DZA65_RS04090at 864.779 kb on + strand, within DZA65_RS04090at 864.779 kb on + strandat 864.780 kb on - strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.809 kb on + strand, within DZA65_RS04090at 864.810 kb on - strand, within DZA65_RS04090at 864.810 kb on - strand, within DZA65_RS04090at 864.810 kb on - strand, within DZA65_RS04090at 864.813 kb on + strand, within DZA65_RS04090at 864.813 kb on + strand, within DZA65_RS04090at 864.813 kb on + strand, within DZA65_RS04090at 864.814 kb on - strand, within DZA65_RS04090at 864.814 kb on - strand, within DZA65_RS04090at 864.824 kb on + strand, within DZA65_RS04090at 864.825 kb on - strand, within DZA65_RS04090at 864.825 kb on - strand, within DZA65_RS04090at 864.825 kb on - strand, within DZA65_RS04090at 864.825 kb on - strand, within DZA65_RS04090at 864.883 kb on - strand, within DZA65_RS04090at 864.925 kb on - strandat 864.925 kb on - strandat 864.925 kb on - strandat 864.925 kb on - strandat 865.054 kb on + strandat 865.055 kb on - strandat 865.207 kb on + strand, within DZA65_RS04095at 865.208 kb on - strand, within DZA65_RS04095at 865.208 kb on - strand, within DZA65_RS04095at 865.208 kb on - strand, within DZA65_RS04095at 865.215 kb on + strand, within DZA65_RS04095at 865.236 kb on + strand, within DZA65_RS04095at 865.236 kb on + strand, within DZA65_RS04095at 865.236 kb on + strand, within DZA65_RS04095at 865.236 kb on + strand, within DZA65_RS04095at 865.236 kb on + strand, within DZA65_RS04095at 865.237 kb on - strand, within DZA65_RS04095at 865.390 kb on + strand, within DZA65_RS04095at 865.420 kb on + strand, within DZA65_RS04095at 865.420 kb on + strand, within DZA65_RS04095at 865.420 kb on + strand, within DZA65_RS04095at 865.441 kb on - strand, within DZA65_RS04095at 865.441 kb on - strand, within DZA65_RS04095at 865.441 kb on - strand, within DZA65_RS04095at 865.483 kb on + strand, within DZA65_RS04095at 865.483 kb on + strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.484 kb on - strand, within DZA65_RS04095at 865.529 kb on - strand, within DZA65_RS04095at 865.664 kb on + strandat 865.698 kb on + strandat 865.698 kb on + strandat 865.698 kb on + strandat 865.699 kb on - strandat 865.706 kb on + strandat 865.707 kb on - strandat 865.785 kb on + strandat 865.822 kb on - strandat 865.834 kb on + strandat 865.834 kb on + strandat 865.834 kb on + strandat 865.835 kb on - strandat 865.835 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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863,033 - -0.5
863,042 + -1.2
863,042 + -0.1
863,069 + -2.2
863,073 + -2.5
863,073 + +0.6
863,073 + +0.6
863,073 + +2.9
863,074 - -0.1
863,074 - +0.8
863,074 - -0.1
863,074 - -1.4
863,074 - +0.2
863,074 - +3.0
863,074 - -0.9
863,074 - +0.6
863,074 - +0.4
863,087 - +0.8
863,087 - +1.0
863,094 - +0.1
863,132 + +2.9
863,133 - -0.3
863,179 - DZA65_RS04085 0.12 -0.6
863,179 - DZA65_RS04085 0.12 -1.8
863,193 + DZA65_RS04085 0.14 -1.8
863,193 + DZA65_RS04085 0.14 -1.5
863,193 + DZA65_RS04085 0.14 -1.4
863,194 - DZA65_RS04085 0.14 -0.8
863,194 - DZA65_RS04085 0.14 +0.2
863,194 - DZA65_RS04085 0.14 -0.3
863,248 + DZA65_RS04085 0.21 -0.9
863,248 + +1.0
863,257 + DZA65_RS04085 0.22 +4.6
863,257 + DZA65_RS04085 0.22 -0.7
863,258 - DZA65_RS04085 0.22 +0.8
863,258 - DZA65_RS04085 0.22 +0.0
863,258 - -0.2
863,258 - DZA65_RS04085 0.22 -0.4
863,305 + DZA65_RS04085 0.27 +0.2
863,305 + DZA65_RS04085 0.27 +0.2
863,323 + DZA65_RS04085 0.30 -0.4
863,324 - DZA65_RS04085 0.30 -0.8
863,324 - DZA65_RS04085 0.30 -0.2
863,324 - DZA65_RS04085 0.30 -1.5
863,350 + DZA65_RS04085 0.33 +2.2
863,372 - DZA65_RS04085 0.35 -0.8
863,409 + DZA65_RS04085 0.40 -0.2
863,410 - DZA65_RS04085 0.40 -0.4
863,464 + DZA65_RS04085 0.46 -0.1
863,475 - DZA65_RS04085 0.48 +1.4
863,475 - DZA65_RS04085 0.48 -0.4
863,475 - DZA65_RS04085 0.48 +2.1
863,506 + DZA65_RS04085 0.51 -1.3
863,507 - DZA65_RS04085 0.51 -1.3
863,530 + DZA65_RS04085 0.54 +1.0
863,531 - DZA65_RS04085 0.54 -1.2
863,549 + DZA65_RS04085 0.57 +1.4
863,549 + DZA65_RS04085 0.57 -0.6
863,549 + DZA65_RS04085 0.57 +0.9
863,549 + DZA65_RS04085 0.57 +0.8
863,549 + DZA65_RS04085 0.57 -1.0
863,550 - DZA65_RS04085 0.57 +5.2
863,550 - DZA65_RS04085 0.57 +0.4
863,562 - DZA65_RS04085 0.58 -2.5
863,562 - DZA65_RS04085 0.58 +0.4
863,573 + DZA65_RS04085 0.59 +0.0
863,574 - DZA65_RS04085 0.59 -1.2
863,574 - DZA65_RS04085 0.59 +0.1
863,588 + DZA65_RS04085 0.61 -1.8
863,589 - DZA65_RS04085 0.61 +1.9
863,589 - DZA65_RS04085 0.61 +0.6
863,646 - DZA65_RS04085 0.68 -1.3
863,693 - DZA65_RS04085 0.74 +1.3
863,753 + DZA65_RS04085 0.81 +1.8
863,808 - DZA65_RS04085 0.87 -0.2
863,852 + +1.6
863,853 - -0.8
863,859 - -0.6
863,910 + +2.4
863,910 + -0.2
863,911 - +1.4
863,911 - -0.2
863,943 - +0.1
863,966 + +0.2
863,966 + -0.2
863,967 - -0.8
863,967 - +0.7
863,975 - -1.1
863,994 + -0.8
864,007 - +1.0
864,007 - -1.8
864,252 + DZA65_RS04090 0.28 +1.1
864,252 + DZA65_RS04090 0.28 +1.0
864,252 + DZA65_RS04090 0.28 -1.2
864,252 + DZA65_RS04090 0.28 +3.2
864,253 - DZA65_RS04090 0.28 -1.4
864,253 - DZA65_RS04090 0.28 -3.0
864,253 - DZA65_RS04090 0.28 -1.3
864,253 - DZA65_RS04090 0.28 +1.5
864,254 + DZA65_RS04090 0.28 +1.2
864,254 + DZA65_RS04090 0.28 +0.2
864,254 + DZA65_RS04090 0.28 +0.9
864,255 - DZA65_RS04090 0.28 -0.4
864,255 - DZA65_RS04090 0.28 +0.8
864,255 - DZA65_RS04090 0.28 -1.0
864,255 - DZA65_RS04090 0.28 -0.8
864,255 - DZA65_RS04090 0.28 +0.0
864,255 - DZA65_RS04090 0.28 -0.5
864,383 + DZA65_RS04090 0.40 -1.5
864,512 + DZA65_RS04090 0.53 -1.0
864,513 - DZA65_RS04090 0.53 -0.8
864,529 + +0.8
864,549 + DZA65_RS04090 0.57 -2.2
864,550 - DZA65_RS04090 0.57 -1.0
864,666 + DZA65_RS04090 0.68 +1.3
864,765 - DZA65_RS04090 0.78 -1.2
864,765 - DZA65_RS04090 0.78 -1.8
864,779 + DZA65_RS04090 0.79 -1.0
864,779 + -1.5
864,780 - DZA65_RS04090 0.79 -1.5
864,809 + DZA65_RS04090 0.82 +2.2
864,809 + DZA65_RS04090 0.82 +0.1
864,809 + DZA65_RS04090 0.82 -0.7
864,809 + DZA65_RS04090 0.82 -0.8
864,809 + DZA65_RS04090 0.82 +0.8
864,809 + DZA65_RS04090 0.82 +1.5
864,809 + DZA65_RS04090 0.82 -2.2
864,810 - DZA65_RS04090 0.82 -0.5
864,810 - DZA65_RS04090 0.82 -0.6
864,810 - DZA65_RS04090 0.82 +0.3
864,813 + DZA65_RS04090 0.82 -2.0
864,813 + DZA65_RS04090 0.82 +1.0
864,813 + DZA65_RS04090 0.82 -1.0
864,814 - DZA65_RS04090 0.82 +1.2
864,814 - DZA65_RS04090 0.82 -0.4
864,824 + DZA65_RS04090 0.83 -0.8
864,825 - DZA65_RS04090 0.83 +0.2
864,825 - DZA65_RS04090 0.83 -1.2
864,825 - DZA65_RS04090 0.83 +0.2
864,825 - DZA65_RS04090 0.83 -0.2
864,883 - DZA65_RS04090 0.89 +0.8
864,925 - +1.7
864,925 - -2.0
864,925 - -1.3
864,925 - -0.2
865,054 + +0.4
865,055 - -1.2
865,207 + DZA65_RS04095 0.30 -0.5
865,208 - DZA65_RS04095 0.30 -1.4
865,208 - DZA65_RS04095 0.30 +1.0
865,208 - DZA65_RS04095 0.30 -1.4
865,215 + DZA65_RS04095 0.31 +0.9
865,236 + DZA65_RS04095 0.34 -1.3
865,236 + DZA65_RS04095 0.34 -1.0
865,236 + DZA65_RS04095 0.34 +1.4
865,236 + DZA65_RS04095 0.34 +1.1
865,236 + DZA65_RS04095 0.34 -0.2
865,237 - DZA65_RS04095 0.34 +0.1
865,390 + DZA65_RS04095 0.56 +0.9
865,420 + DZA65_RS04095 0.60 +1.2
865,420 + DZA65_RS04095 0.60 -0.5
865,420 + DZA65_RS04095 0.60 +0.2
865,441 - DZA65_RS04095 0.63 +0.3
865,441 - DZA65_RS04095 0.63 +0.4
865,441 - DZA65_RS04095 0.63 -2.3
865,483 + DZA65_RS04095 0.69 +0.2
865,483 + DZA65_RS04095 0.69 +0.0
865,484 - DZA65_RS04095 0.69 +0.0
865,484 - DZA65_RS04095 0.69 +0.4
865,484 - DZA65_RS04095 0.69 -0.2
865,484 - DZA65_RS04095 0.69 +1.5
865,484 - DZA65_RS04095 0.69 -0.3
865,529 - DZA65_RS04095 0.75 -0.2
865,664 + -2.2
865,698 + -0.3
865,698 + -2.0
865,698 + -0.8
865,699 - +0.8
865,706 + +0.6
865,707 - +2.0
865,785 + -1.1
865,822 - +2.7
865,834 + +1.0
865,834 + +0.7
865,834 + -2.0
865,835 - +1.5
865,835 - +0.5

Or see this region's nucleotide sequence