Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS04055 and DZA65_RS04060 are separated by 299 nucleotides DZA65_RS04060 and DZA65_RS04065 are separated by 84 nucleotides
DZA65_RS04055: DZA65_RS04055 - replication endonuclease, at 854,554 to 856,608
_RS04055
DZA65_RS04060: DZA65_RS04060 - hypothetical protein, at 856,908 to 858,428
_RS04060
DZA65_RS04065: DZA65_RS04065 - DNA adenine methylase, at 858,513 to 859,373
_RS04065
Position (kb) 856
857
858
859 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 855.922 kb on + strand, within DZA65_RS04055 at 856.147 kb on + strand, within DZA65_RS04055 at 856.147 kb on + strand, within DZA65_RS04055 at 856.147 kb on + strand, within DZA65_RS04055 at 856.147 kb on + strand, within DZA65_RS04055 at 856.147 kb on + strand, within DZA65_RS04055 at 856.148 kb on - strand, within DZA65_RS04055 at 856.148 kb on - strand, within DZA65_RS04055 at 856.148 kb on - strand, within DZA65_RS04055 at 856.207 kb on + strand, within DZA65_RS04055 at 856.207 kb on + strand, within DZA65_RS04055 at 856.207 kb on + strand, within DZA65_RS04055 at 856.208 kb on - strand, within DZA65_RS04055 at 856.267 kb on + strand, within DZA65_RS04055 at 856.267 kb on + strand, within DZA65_RS04055 at 856.267 kb on + strand, within DZA65_RS04055 at 856.267 kb on + strand, within DZA65_RS04055 at 856.268 kb on - strand, within DZA65_RS04055 at 856.268 kb on - strand, within DZA65_RS04055 at 856.268 kb on - strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.401 kb on + strand, within DZA65_RS04055 at 856.402 kb on - strand, within DZA65_RS04055 at 856.402 kb on - strand, within DZA65_RS04055 at 856.402 kb on - strand, within DZA65_RS04055 at 856.407 kb on + strand at 856.408 kb on - strand at 856.408 kb on - strand at 856.448 kb on + strand at 856.559 kb on + strand at 856.559 kb on + strand at 856.560 kb on - strand at 856.560 kb on - strand at 856.560 kb on - strand at 856.620 kb on + strand at 856.621 kb on - strand at 856.630 kb on + strand at 856.630 kb on + strand at 856.631 kb on - strand at 856.631 kb on - strand at 856.644 kb on + strand at 856.644 kb on + strand at 856.644 kb on + strand at 856.644 kb on + strand at 856.644 kb on + strand at 856.645 kb on - strand at 856.645 kb on - strand at 856.645 kb on - strand at 856.645 kb on - strand at 856.645 kb on - strand at 856.645 kb on - strand at 856.646 kb on + strand at 856.646 kb on + strand at 856.646 kb on + strand at 856.646 kb on + strand at 856.647 kb on - strand at 856.647 kb on - strand at 856.647 kb on - strand at 856.647 kb on - strand at 856.654 kb on - strand at 856.654 kb on - strand at 856.654 kb on - strand at 856.683 kb on - strand at 856.690 kb on + strand at 856.690 kb on + strand at 856.690 kb on + strand at 856.690 kb on + strand at 856.690 kb on + strand at 856.691 kb on - strand at 856.691 kb on - strand at 856.691 kb on - strand at 856.697 kb on - strand at 856.712 kb on - strand at 856.712 kb on - strand at 856.712 kb on - strand at 856.723 kb on - strand at 856.760 kb on - strand at 856.760 kb on - strand at 856.788 kb on + strand at 856.814 kb on - strand at 856.814 kb on - strand at 856.834 kb on + strand at 856.834 kb on + strand at 856.834 kb on + strand at 856.835 kb on - strand at 856.835 kb on - strand at 856.835 kb on - strand at 856.864 kb on + strand at 856.905 kb on - strand at 856.912 kb on - strand at 857.004 kb on - strand at 857.167 kb on + strand, within DZA65_RS04060 at 857.271 kb on + strand, within DZA65_RS04060 at 857.287 kb on - strand, within DZA65_RS04060 at 857.370 kb on + strand, within DZA65_RS04060 at 857.370 kb on + strand, within DZA65_RS04060 at 857.527 kb on + strand, within DZA65_RS04060 at 857.573 kb on - strand at 857.783 kb on + strand, within DZA65_RS04060 at 857.845 kb on + strand, within DZA65_RS04060 at 857.845 kb on + strand, within DZA65_RS04060 at 857.845 kb on + strand, within DZA65_RS04060 at 857.846 kb on - strand, within DZA65_RS04060 at 857.850 kb on - strand, within DZA65_RS04060 at 857.850 kb on - strand, within DZA65_RS04060 at 857.850 kb on - strand, within DZA65_RS04060 at 857.882 kb on + strand, within DZA65_RS04060 at 857.882 kb on + strand, within DZA65_RS04060 at 857.883 kb on - strand, within DZA65_RS04060 at 857.883 kb on - strand, within DZA65_RS04060 at 857.981 kb on + strand, within DZA65_RS04060 at 857.982 kb on - strand, within DZA65_RS04060 at 857.988 kb on - strand, within DZA65_RS04060 at 857.988 kb on - strand, within DZA65_RS04060 at 857.988 kb on - strand, within DZA65_RS04060 at 858.163 kb on - strand, within DZA65_RS04060 at 858.211 kb on + strand, within DZA65_RS04060 at 858.211 kb on + strand, within DZA65_RS04060 at 858.260 kb on + strand, within DZA65_RS04060 at 858.324 kb on + strand at 858.324 kb on + strand at 858.325 kb on - strand at 858.432 kb on + strand at 858.433 kb on - strand at 858.433 kb on - strand at 858.433 kb on - strand at 859.405 kb on - strand at 859.410 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 855,922 + DZA65_RS04055 0.67 -0.2 856,147 + DZA65_RS04055 0.78 +0.0 856,147 + DZA65_RS04055 0.78 -0.0 856,147 + DZA65_RS04055 0.78 -1.0 856,147 + DZA65_RS04055 0.78 -2.8 856,147 + DZA65_RS04055 0.78 +1.4 856,148 - DZA65_RS04055 0.78 -0.1 856,148 - DZA65_RS04055 0.78 -1.5 856,148 - DZA65_RS04055 0.78 -0.7 856,207 + DZA65_RS04055 0.80 -1.2 856,207 + DZA65_RS04055 0.80 -2.2 856,207 + DZA65_RS04055 0.80 -2.3 856,208 - DZA65_RS04055 0.80 -0.2 856,267 + DZA65_RS04055 0.83 -0.1 856,267 + DZA65_RS04055 0.83 -1.8 856,267 + DZA65_RS04055 0.83 -1.0 856,267 + DZA65_RS04055 0.83 -2.0 856,268 - DZA65_RS04055 0.83 -1.2 856,268 - DZA65_RS04055 0.83 +0.2 856,268 - DZA65_RS04055 0.83 +0.9 856,401 + DZA65_RS04055 0.90 +1.5 856,401 + DZA65_RS04055 0.90 +1.3 856,401 + DZA65_RS04055 0.90 -0.2 856,401 + DZA65_RS04055 0.90 +1.8 856,401 + DZA65_RS04055 0.90 -1.2 856,401 + DZA65_RS04055 0.90 -2.0 856,402 - DZA65_RS04055 0.90 -1.4 856,402 - DZA65_RS04055 0.90 -0.9 856,402 - DZA65_RS04055 0.90 -3.2 856,407 + +0.9 856,408 - +0.9 856,408 - +1.8 856,448 + -0.1 856,559 + +1.1 856,559 + +1.1 856,560 - -0.1 856,560 - +1.1 856,560 - +0.8 856,620 + +1.2 856,621 - -0.3 856,630 + +1.8 856,630 + -0.6 856,631 - -0.6 856,631 - -1.7 856,644 + +0.6 856,644 + +0.6 856,644 + -0.0 856,644 + -1.0 856,644 + -0.2 856,645 - +0.5 856,645 - -0.4 856,645 - -1.2 856,645 - +0.1 856,645 - -0.2 856,645 - +0.6 856,646 + +0.1 856,646 + -0.4 856,646 + -0.9 856,646 + -1.5 856,647 - -0.7 856,647 - -0.0 856,647 - -0.4 856,647 - -1.5 856,654 - -0.4 856,654 - -0.0 856,654 - +0.9 856,683 - -1.8 856,690 + -1.1 856,690 + +0.4 856,690 + +0.4 856,690 + +0.6 856,690 + +1.8 856,691 - +0.5 856,691 - -1.9 856,691 - +1.8 856,697 - -0.5 856,712 - -0.4 856,712 - -0.9 856,712 - -0.4 856,723 - -2.4 856,760 - -0.5 856,760 - -2.0 856,788 + -0.2 856,814 - -0.3 856,814 - -1.8 856,834 + +0.9 856,834 + -0.3 856,834 + -0.2 856,835 - +0.5 856,835 - -1.0 856,835 - -2.0 856,864 + +0.6 856,905 - -0.2 856,912 - -1.8 857,004 - -1.9 857,167 + DZA65_RS04060 0.17 +2.1 857,271 + DZA65_RS04060 0.24 +0.1 857,287 - DZA65_RS04060 0.25 -0.1 857,370 + DZA65_RS04060 0.30 -1.6 857,370 + DZA65_RS04060 0.30 +0.6 857,527 + DZA65_RS04060 0.41 -0.2 857,573 - -0.2 857,783 + DZA65_RS04060 0.58 -0.2 857,845 + DZA65_RS04060 0.62 +1.8 857,845 + DZA65_RS04060 0.62 +0.2 857,845 + DZA65_RS04060 0.62 -1.2 857,846 - DZA65_RS04060 0.62 +1.6 857,850 - DZA65_RS04060 0.62 +0.6 857,850 - DZA65_RS04060 0.62 +0.2 857,850 - DZA65_RS04060 0.62 +0.7 857,882 + DZA65_RS04060 0.64 -0.2 857,882 + DZA65_RS04060 0.64 +1.3 857,883 - DZA65_RS04060 0.64 +0.9 857,883 - DZA65_RS04060 0.64 -1.2 857,981 + DZA65_RS04060 0.71 -0.2 857,982 - DZA65_RS04060 0.71 +0.1 857,988 - DZA65_RS04060 0.71 -0.8 857,988 - DZA65_RS04060 0.71 -0.9 857,988 - DZA65_RS04060 0.71 -2.4 858,163 - DZA65_RS04060 0.83 +0.5 858,211 + DZA65_RS04060 0.86 -0.1 858,211 + DZA65_RS04060 0.86 +2.8 858,260 + DZA65_RS04060 0.89 -2.7 858,324 + -0.6 858,324 + -0.1 858,325 - +1.4 858,432 + +0.6 858,433 - +0.8 858,433 - +0.7 858,433 - -0.4 859,405 - -0.2 859,410 - -0.5
Or see this region's nucleotide sequence