Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS03395 and DZA65_RS03400 are separated by 116 nucleotides DZA65_RS03400 and DZA65_RS03405 are separated by 31 nucleotides DZA65_RS03405 and DZA65_RS03410 are separated by 61 nucleotides DZA65_RS03410 and DZA65_RS03415 are separated by 136 nucleotides DZA65_RS03415 and DZA65_RS03420 are separated by 126 nucleotides
DZA65_RS03395: DZA65_RS03395 - LysR family transcriptional regulator, at 719,189 to 720,091
_RS03395
DZA65_RS03400: DZA65_RS03400 - tRNA-Leu, at 720,208 to 720,293
_RS03400
DZA65_RS03405: DZA65_RS03405 - tRNA-Leu, at 720,325 to 720,410
_RS03405
DZA65_RS03410: DZA65_RS03410 - tRNA-Leu, at 720,472 to 720,557
_RS03410
DZA65_RS03415: DZA65_RS03415 - DUF1435 domain-containing protein, at 720,694 to 720,978
_RS03415
DZA65_RS03420: DZA65_RS03420 - LysR family transcriptional regulator, at 721,105 to 721,998
_RS03420
Position (kb) 720
721 Strain fitness (log2 ratio) -2
-1
0
1
2
3 at 719.584 kb on + strand, within DZA65_RS03395 at 719.585 kb on - strand, within DZA65_RS03395 at 719.585 kb on - strand, within DZA65_RS03395 at 719.681 kb on - strand, within DZA65_RS03395 at 719.681 kb on - strand, within DZA65_RS03395 at 719.681 kb on - strand, within DZA65_RS03395 at 719.681 kb on - strand, within DZA65_RS03395 at 719.699 kb on + strand, within DZA65_RS03395 at 719.700 kb on - strand, within DZA65_RS03395 at 719.700 kb on - strand, within DZA65_RS03395 at 719.762 kb on + strand, within DZA65_RS03395 at 719.762 kb on + strand, within DZA65_RS03395 at 719.762 kb on + strand, within DZA65_RS03395 at 719.776 kb on + strand, within DZA65_RS03395 at 719.776 kb on + strand, within DZA65_RS03395 at 719.776 kb on + strand, within DZA65_RS03395 at 719.776 kb on + strand, within DZA65_RS03395 at 719.776 kb on + strand, within DZA65_RS03395 at 719.776 kb on + strand, within DZA65_RS03395 at 719.776 kb on + strand, within DZA65_RS03395 at 719.776 kb on + strand, within DZA65_RS03395 at 719.777 kb on - strand, within DZA65_RS03395 at 719.777 kb on - strand, within DZA65_RS03395 at 719.777 kb on - strand, within DZA65_RS03395 at 719.777 kb on - strand, within DZA65_RS03395 at 719.777 kb on - strand, within DZA65_RS03395 at 719.870 kb on + strand, within DZA65_RS03395 at 719.870 kb on + strand, within DZA65_RS03395 at 719.870 kb on + strand, within DZA65_RS03395 at 719.870 kb on + strand, within DZA65_RS03395 at 719.870 kb on + strand, within DZA65_RS03395 at 719.870 kb on + strand, within DZA65_RS03395 at 719.870 kb on + strand, within DZA65_RS03395 at 719.870 kb on + strand, within DZA65_RS03395 at 719.870 kb on + strand, within DZA65_RS03395 at 719.871 kb on - strand, within DZA65_RS03395 at 719.871 kb on - strand, within DZA65_RS03395 at 719.871 kb on - strand, within DZA65_RS03395 at 719.871 kb on - strand, within DZA65_RS03395 at 719.871 kb on - strand, within DZA65_RS03395 at 719.872 kb on + strand, within DZA65_RS03395 at 719.873 kb on - strand, within DZA65_RS03395 at 719.996 kb on + strand, within DZA65_RS03395 at 719.996 kb on + strand, within DZA65_RS03395 at 719.996 kb on + strand, within DZA65_RS03395 at 719.996 kb on + strand, within DZA65_RS03395 at 719.996 kb on + strand, within DZA65_RS03395 at 719.996 kb on + strand, within DZA65_RS03395 at 719.996 kb on + strand, within DZA65_RS03395 at 719.996 kb on + strand, within DZA65_RS03395 at 719.997 kb on - strand, within DZA65_RS03395 at 719.997 kb on - strand, within DZA65_RS03395 at 719.997 kb on - strand, within DZA65_RS03395 at 719.997 kb on - strand, within DZA65_RS03395 at 719.997 kb on - strand, within DZA65_RS03395 at 719.997 kb on - strand, within DZA65_RS03395 at 719.997 kb on - strand, within DZA65_RS03395 at 719.997 kb on - strand at 719.997 kb on - strand, within DZA65_RS03395 at 719.997 kb on - strand, within DZA65_RS03395 at 719.997 kb on - strand, within DZA65_RS03395 at 719.997 kb on - strand, within DZA65_RS03395 at 720.005 kb on + strand at 720.005 kb on + strand at 720.005 kb on + strand at 720.005 kb on + strand at 720.005 kb on + strand at 720.005 kb on + strand at 720.005 kb on + strand at 720.005 kb on + strand at 720.006 kb on - strand at 720.006 kb on - strand at 720.006 kb on - strand at 720.006 kb on - strand at 720.006 kb on - strand at 720.006 kb on - strand at 720.006 kb on - strand at 720.006 kb on - strand at 720.006 kb on - strand at 720.006 kb on - strand at 720.006 kb on - strand at 720.006 kb on - strand at 720.047 kb on - strand at 720.132 kb on - strand at 720.132 kb on - strand at 720.132 kb on - strand at 720.132 kb on - strand at 720.183 kb on + strand at 720.183 kb on + strand at 720.183 kb on + strand at 720.183 kb on + strand at 720.183 kb on + strand at 720.183 kb on + strand at 720.183 kb on + strand at 720.183 kb on + strand at 720.183 kb on + strand at 720.183 kb on + strand at 720.184 kb on - strand at 720.184 kb on - strand at 720.184 kb on - strand at 720.184 kb on - strand at 720.184 kb on - strand at 720.184 kb on - strand at 720.184 kb on - strand at 720.184 kb on - strand at 720.192 kb on + strand at 720.192 kb on + strand at 720.192 kb on + strand at 720.193 kb on - strand at 720.193 kb on - strand at 720.193 kb on - strand at 720.193 kb on - strand at 720.193 kb on - strand at 720.193 kb on - strand at 720.193 kb on - strand at 720.228 kb on - strand, within DZA65_RS03400 at 720.250 kb on - strand, within DZA65_RS03400 at 720.310 kb on + strand at 720.311 kb on - strand at 720.320 kb on + strand at 720.320 kb on + strand at 720.345 kb on - strand, within DZA65_RS03405 at 720.366 kb on + strand, within DZA65_RS03405 at 720.367 kb on - strand, within DZA65_RS03405 at 720.367 kb on - strand, within DZA65_RS03405 at 720.445 kb on - strand at 720.461 kb on + strand at 720.461 kb on + strand at 720.461 kb on + strand at 720.461 kb on + strand at 720.461 kb on + strand at 720.461 kb on + strand at 720.462 kb on - strand at 720.462 kb on - strand at 720.462 kb on - strand at 720.464 kb on + strand at 720.464 kb on + strand at 720.464 kb on + strand at 720.464 kb on + strand at 720.464 kb on + strand at 720.465 kb on - strand at 720.465 kb on - strand at 720.465 kb on - strand at 720.465 kb on - strand at 720.514 kb on - strand, within DZA65_RS03410 at 720.514 kb on - strand, within DZA65_RS03410 at 720.514 kb on - strand, within DZA65_RS03410 at 720.514 kb on - strand, within DZA65_RS03410 at 720.608 kb on + strand at 720.608 kb on + strand at 720.609 kb on - strand at 720.609 kb on - strand at 720.633 kb on + strand at 720.634 kb on - strand at 720.695 kb on + strand at 720.768 kb on - strand, within DZA65_RS03415 at 720.768 kb on - strand, within DZA65_RS03415 at 720.768 kb on - strand, within DZA65_RS03415 at 720.768 kb on - strand, within DZA65_RS03415 at 720.768 kb on - strand, within DZA65_RS03415 at 720.777 kb on + strand, within DZA65_RS03415 at 720.830 kb on + strand at 720.830 kb on + strand, within DZA65_RS03415 at 720.830 kb on + strand, within DZA65_RS03415 at 720.830 kb on + strand, within DZA65_RS03415 at 720.830 kb on + strand, within DZA65_RS03415 at 720.830 kb on + strand, within DZA65_RS03415 at 720.830 kb on + strand, within DZA65_RS03415 at 720.830 kb on + strand, within DZA65_RS03415 at 720.830 kb on + strand, within DZA65_RS03415 at 720.831 kb on - strand, within DZA65_RS03415 at 720.831 kb on - strand, within DZA65_RS03415 at 720.831 kb on - strand, within DZA65_RS03415 at 720.831 kb on - strand, within DZA65_RS03415 at 720.831 kb on - strand, within DZA65_RS03415 at 720.850 kb on + strand, within DZA65_RS03415 at 720.850 kb on + strand, within DZA65_RS03415 at 720.850 kb on + strand, within DZA65_RS03415 at 720.851 kb on - strand, within DZA65_RS03415 at 720.851 kb on - strand, within DZA65_RS03415 at 720.895 kb on + strand, within DZA65_RS03415 at 720.895 kb on + strand, within DZA65_RS03415 at 720.896 kb on - strand, within DZA65_RS03415 at 720.896 kb on - strand, within DZA65_RS03415 at 720.896 kb on - strand, within DZA65_RS03415 at 720.896 kb on - strand, within DZA65_RS03415 at 720.896 kb on - strand, within DZA65_RS03415 at 720.896 kb on - strand, within DZA65_RS03415 at 720.896 kb on - strand, within DZA65_RS03415 at 720.929 kb on + strand, within DZA65_RS03415 at 720.937 kb on + strand, within DZA65_RS03415 at 720.937 kb on + strand, within DZA65_RS03415 at 720.937 kb on + strand, within DZA65_RS03415 at 720.938 kb on - strand, within DZA65_RS03415 at 720.938 kb on - strand, within DZA65_RS03415 at 720.938 kb on - strand, within DZA65_RS03415 at 721.032 kb on + strand at 721.032 kb on + strand at 721.032 kb on + strand at 721.033 kb on - strand at 721.033 kb on - strand at 721.034 kb on + strand at 721.034 kb on + strand at 721.034 kb on + strand at 721.034 kb on + strand at 721.034 kb on + strand at 721.034 kb on + strand at 721.034 kb on + strand at 721.034 kb on + strand at 721.034 kb on + strand at 721.034 kb on + strand at 721.035 kb on - strand at 721.035 kb on - strand at 721.035 kb on - strand at 721.035 kb on - strand at 721.035 kb on - strand at 721.035 kb on - strand at 721.035 kb on - strand at 721.035 kb on - strand at 721.035 kb on - strand at 721.035 kb on - strand at 721.059 kb on + strand at 721.059 kb on + strand at 721.060 kb on - strand at 721.060 kb on - strand at 721.090 kb on + strand at 721.091 kb on - strand at 721.121 kb on + strand at 721.121 kb on + strand at 721.121 kb on + strand at 721.121 kb on + strand at 721.121 kb on + strand at 721.182 kb on + strand at 721.183 kb on - strand at 721.226 kb on + strand, within DZA65_RS03420 at 721.226 kb on + strand, within DZA65_RS03420 at 721.226 kb on + strand, within DZA65_RS03420 at 721.227 kb on - strand, within DZA65_RS03420 at 721.227 kb on - strand, within DZA65_RS03420 at 721.227 kb on - strand, within DZA65_RS03420 at 721.227 kb on - strand, within DZA65_RS03420 at 721.317 kb on + strand, within DZA65_RS03420 at 721.317 kb on + strand, within DZA65_RS03420 at 721.318 kb on - strand, within DZA65_RS03420 at 721.361 kb on + strand, within DZA65_RS03420 at 721.516 kb on + strand, within DZA65_RS03420 at 721.517 kb on - strand, within DZA65_RS03420 at 721.517 kb on - strand, within DZA65_RS03420
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 719,584 + DZA65_RS03395 0.44 -0.5 719,585 - DZA65_RS03395 0.44 +1.1 719,585 - DZA65_RS03395 0.44 +0.3 719,681 - DZA65_RS03395 0.54 +1.1 719,681 - DZA65_RS03395 0.54 -2.3 719,681 - DZA65_RS03395 0.54 -1.7 719,681 - DZA65_RS03395 0.54 +1.9 719,699 + DZA65_RS03395 0.56 -0.6 719,700 - DZA65_RS03395 0.57 +0.0 719,700 - DZA65_RS03395 0.57 -1.0 719,762 + DZA65_RS03395 0.63 +0.2 719,762 + DZA65_RS03395 0.63 +2.3 719,762 + DZA65_RS03395 0.63 -2.0 719,776 + DZA65_RS03395 0.65 +0.3 719,776 + DZA65_RS03395 0.65 +0.5 719,776 + DZA65_RS03395 0.65 -2.5 719,776 + DZA65_RS03395 0.65 -0.4 719,776 + DZA65_RS03395 0.65 -0.1 719,776 + DZA65_RS03395 0.65 -1.5 719,776 + DZA65_RS03395 0.65 -1.3 719,776 + DZA65_RS03395 0.65 -0.5 719,777 - DZA65_RS03395 0.65 -0.4 719,777 - DZA65_RS03395 0.65 +2.0 719,777 - DZA65_RS03395 0.65 +0.3 719,777 - DZA65_RS03395 0.65 -0.7 719,777 - DZA65_RS03395 0.65 +0.4 719,870 + DZA65_RS03395 0.75 -2.1 719,870 + DZA65_RS03395 0.75 -0.1 719,870 + DZA65_RS03395 0.75 +1.7 719,870 + DZA65_RS03395 0.75 -1.7 719,870 + DZA65_RS03395 0.75 +2.0 719,870 + DZA65_RS03395 0.75 -1.0 719,870 + DZA65_RS03395 0.75 -0.6 719,870 + DZA65_RS03395 0.75 -0.6 719,870 + DZA65_RS03395 0.75 +1.1 719,871 - DZA65_RS03395 0.76 -0.1 719,871 - DZA65_RS03395 0.76 +0.0 719,871 - DZA65_RS03395 0.76 +2.5 719,871 - DZA65_RS03395 0.76 -1.7 719,871 - DZA65_RS03395 0.76 -0.3 719,872 + DZA65_RS03395 0.76 +2.0 719,873 - DZA65_RS03395 0.76 +0.3 719,996 + DZA65_RS03395 0.89 +1.2 719,996 + DZA65_RS03395 0.89 +1.5 719,996 + DZA65_RS03395 0.89 -0.1 719,996 + DZA65_RS03395 0.89 +2.3 719,996 + DZA65_RS03395 0.89 -1.3 719,996 + DZA65_RS03395 0.89 -0.7 719,996 + DZA65_RS03395 0.89 -0.1 719,996 + DZA65_RS03395 0.89 +0.6 719,997 - DZA65_RS03395 0.89 +0.6 719,997 - DZA65_RS03395 0.89 +1.6 719,997 - DZA65_RS03395 0.89 +1.0 719,997 - DZA65_RS03395 0.89 -1.5 719,997 - DZA65_RS03395 0.89 -0.5 719,997 - DZA65_RS03395 0.89 +1.2 719,997 - DZA65_RS03395 0.89 +0.6 719,997 - +0.9 719,997 - DZA65_RS03395 0.89 -0.3 719,997 - DZA65_RS03395 0.89 +0.1 719,997 - DZA65_RS03395 0.89 -2.0 719,997 - DZA65_RS03395 0.89 -2.5 720,005 + -2.0 720,005 + +0.0 720,005 + -0.9 720,005 + +1.5 720,005 + -2.1 720,005 + -0.0 720,005 + -0.9 720,005 + -0.1 720,006 - +0.9 720,006 - -1.1 720,006 - -2.7 720,006 - -2.6 720,006 - +0.2 720,006 - +0.3 720,006 - +0.7 720,006 - -0.4 720,006 - -1.0 720,006 - -0.5 720,006 - -0.9 720,006 - -0.7 720,047 - -0.2 720,132 - +1.9 720,132 - -1.1 720,132 - +0.0 720,132 - +1.9 720,183 + +0.6 720,183 + +0.3 720,183 + -0.7 720,183 + -1.5 720,183 + +0.9 720,183 + +0.9 720,183 + -1.3 720,183 + -1.1 720,183 + +0.3 720,183 + -0.1 720,184 - +0.5 720,184 - +0.5 720,184 - -0.1 720,184 - +0.1 720,184 - -1.5 720,184 - -0.7 720,184 - -2.0 720,184 - -0.5 720,192 + -1.7 720,192 + +1.3 720,192 + +0.4 720,193 - +0.5 720,193 - -0.7 720,193 - +3.2 720,193 - -0.1 720,193 - -1.0 720,193 - -1.3 720,193 - +0.5 720,228 - DZA65_RS03400 0.23 +1.2 720,250 - DZA65_RS03400 0.49 -2.0 720,310 + -1.1 720,311 - +2.2 720,320 + +0.7 720,320 + +0.5 720,345 - DZA65_RS03405 0.23 +0.3 720,366 + DZA65_RS03405 0.48 -2.3 720,367 - DZA65_RS03405 0.49 -1.5 720,367 - DZA65_RS03405 0.49 -1.7 720,445 - -0.6 720,461 + -2.5 720,461 + -0.7 720,461 + -1.5 720,461 + -1.2 720,461 + +0.3 720,461 + +1.0 720,462 - +0.3 720,462 - -0.9 720,462 - -1.7 720,464 + -0.4 720,464 + -0.2 720,464 + +1.8 720,464 + +1.3 720,464 + +0.0 720,465 - -0.5 720,465 - -2.3 720,465 - -1.0 720,465 - -0.6 720,514 - DZA65_RS03410 0.49 -1.2 720,514 - DZA65_RS03410 0.49 -0.3 720,514 - DZA65_RS03410 0.49 -1.5 720,514 - DZA65_RS03410 0.49 -1.1 720,608 + -0.2 720,608 + -1.7 720,609 - -0.3 720,609 - +0.8 720,633 + -2.3 720,634 - +2.4 720,695 + -2.3 720,768 - DZA65_RS03415 0.26 -0.6 720,768 - DZA65_RS03415 0.26 -1.7 720,768 - DZA65_RS03415 0.26 +0.6 720,768 - DZA65_RS03415 0.26 +0.8 720,768 - DZA65_RS03415 0.26 -0.6 720,777 + DZA65_RS03415 0.29 -0.6 720,830 + +0.9 720,830 + DZA65_RS03415 0.48 +1.9 720,830 + DZA65_RS03415 0.48 -2.1 720,830 + DZA65_RS03415 0.48 +1.1 720,830 + DZA65_RS03415 0.48 +1.4 720,830 + DZA65_RS03415 0.48 +1.4 720,830 + DZA65_RS03415 0.48 -0.5 720,830 + DZA65_RS03415 0.48 -0.3 720,830 + DZA65_RS03415 0.48 +0.5 720,831 - DZA65_RS03415 0.48 -1.1 720,831 - DZA65_RS03415 0.48 -0.5 720,831 - DZA65_RS03415 0.48 +2.9 720,831 - DZA65_RS03415 0.48 -0.6 720,831 - DZA65_RS03415 0.48 +0.0 720,850 + DZA65_RS03415 0.55 -1.7 720,850 + DZA65_RS03415 0.55 +2.7 720,850 + DZA65_RS03415 0.55 -0.1 720,851 - DZA65_RS03415 0.55 -0.6 720,851 - DZA65_RS03415 0.55 -0.0 720,895 + DZA65_RS03415 0.71 -0.9 720,895 + DZA65_RS03415 0.71 +1.1 720,896 - DZA65_RS03415 0.71 -1.3 720,896 - DZA65_RS03415 0.71 +0.2 720,896 - DZA65_RS03415 0.71 +1.6 720,896 - DZA65_RS03415 0.71 +0.8 720,896 - DZA65_RS03415 0.71 -1.7 720,896 - DZA65_RS03415 0.71 -1.1 720,896 - DZA65_RS03415 0.71 +1.6 720,929 + DZA65_RS03415 0.82 +1.3 720,937 + DZA65_RS03415 0.85 +0.3 720,937 + DZA65_RS03415 0.85 +0.9 720,937 + DZA65_RS03415 0.85 -1.7 720,938 - DZA65_RS03415 0.86 +0.9 720,938 - DZA65_RS03415 0.86 -0.1 720,938 - DZA65_RS03415 0.86 -2.0 721,032 + -1.4 721,032 + +1.9 721,032 + +0.3 721,033 - +1.0 721,033 - +0.7 721,034 + +0.6 721,034 + -0.9 721,034 + -0.7 721,034 + +0.0 721,034 + +0.3 721,034 + +0.6 721,034 + +1.0 721,034 + -2.3 721,034 + -1.1 721,034 + +0.9 721,035 - -0.0 721,035 - +0.4 721,035 - -2.1 721,035 - -0.5 721,035 - +1.9 721,035 - -0.1 721,035 - +0.4 721,035 - -0.1 721,035 - +1.6 721,035 - -0.8 721,059 + -1.1 721,059 + -1.5 721,060 - +0.9 721,060 - -1.0 721,090 + -1.5 721,091 - +1.0 721,121 + +0.5 721,121 + +0.5 721,121 + +0.1 721,121 + +1.9 721,121 + -1.8 721,182 + -0.0 721,183 - -0.2 721,226 + DZA65_RS03420 0.14 -1.6 721,226 + DZA65_RS03420 0.14 +0.9 721,226 + DZA65_RS03420 0.14 -1.1 721,227 - DZA65_RS03420 0.14 -0.7 721,227 - DZA65_RS03420 0.14 -2.0 721,227 - DZA65_RS03420 0.14 +1.5 721,227 - DZA65_RS03420 0.14 -2.5 721,317 + DZA65_RS03420 0.24 +1.0 721,317 + DZA65_RS03420 0.24 -2.0 721,318 - DZA65_RS03420 0.24 -1.0 721,361 + DZA65_RS03420 0.29 -1.7 721,516 + DZA65_RS03420 0.46 -1.1 721,517 - DZA65_RS03420 0.46 -2.0 721,517 - DZA65_RS03420 0.46 -1.0
Or see this region's nucleotide sequence