Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02690 and DZA65_RS02700 are separated by 270 nucleotides DZA65_RS02700 and DZA65_RS02705 are separated by 393 nucleotides
DZA65_RS02690: DZA65_RS02690 - LacI family DNA-binding transcriptional regulator, at 577,982 to 579,004
_RS02690
DZA65_RS02700: DZA65_RS02700 - L-talarate/galactarate dehydratase, at 579,275 to 580,474
_RS02700
DZA65_RS02705: DZA65_RS02705 - undecaprenyl-phosphate glucose phosphotransferase, at 580,868 to 582,274
_RS02705
Position (kb) 579
580
581 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 578.453 kb on - strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.454 kb on + strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.455 kb on - strand, within DZA65_RS02690 at 578.503 kb on + strand, within DZA65_RS02690 at 578.667 kb on + strand, within DZA65_RS02690 at 578.735 kb on - strand, within DZA65_RS02690 at 578.785 kb on + strand, within DZA65_RS02690 at 578.786 kb on - strand, within DZA65_RS02690 at 578.786 kb on - strand, within DZA65_RS02690 at 578.827 kb on + strand, within DZA65_RS02690 at 578.827 kb on + strand, within DZA65_RS02690 at 578.827 kb on + strand, within DZA65_RS02690 at 578.827 kb on + strand, within DZA65_RS02690 at 578.827 kb on + strand, within DZA65_RS02690 at 578.828 kb on - strand, within DZA65_RS02690 at 578.828 kb on - strand, within DZA65_RS02690 at 578.829 kb on + strand, within DZA65_RS02690 at 578.830 kb on - strand, within DZA65_RS02690 at 578.998 kb on + strand at 578.998 kb on + strand at 578.999 kb on - strand at 579.024 kb on + strand at 579.024 kb on + strand at 579.024 kb on + strand at 579.024 kb on + strand at 579.024 kb on + strand at 579.025 kb on - strand at 579.025 kb on - strand at 579.025 kb on - strand at 579.025 kb on - strand at 579.050 kb on + strand at 579.050 kb on + strand at 579.051 kb on - strand at 579.051 kb on - strand at 579.111 kb on - strand at 579.113 kb on + strand at 579.189 kb on - strand at 579.195 kb on + strand at 579.195 kb on + strand at 579.224 kb on - strand at 579.309 kb on - strand at 579.309 kb on - strand at 579.309 kb on - strand at 579.367 kb on + strand at 579.367 kb on + strand at 579.368 kb on - strand at 579.420 kb on + strand, within DZA65_RS02700 at 579.420 kb on + strand, within DZA65_RS02700 at 579.421 kb on - strand, within DZA65_RS02700 at 579.421 kb on - strand, within DZA65_RS02700 at 579.460 kb on + strand, within DZA65_RS02700 at 579.460 kb on + strand, within DZA65_RS02700 at 579.460 kb on + strand, within DZA65_RS02700 at 579.461 kb on - strand, within DZA65_RS02700 at 579.461 kb on - strand, within DZA65_RS02700 at 579.461 kb on - strand, within DZA65_RS02700 at 579.464 kb on - strand, within DZA65_RS02700 at 579.464 kb on - strand, within DZA65_RS02700 at 579.513 kb on - strand, within DZA65_RS02700 at 579.542 kb on + strand, within DZA65_RS02700 at 579.542 kb on + strand, within DZA65_RS02700 at 579.542 kb on + strand, within DZA65_RS02700 at 579.542 kb on + strand, within DZA65_RS02700 at 579.543 kb on - strand, within DZA65_RS02700 at 579.543 kb on - strand, within DZA65_RS02700 at 579.543 kb on - strand, within DZA65_RS02700 at 579.543 kb on - strand, within DZA65_RS02700 at 579.601 kb on + strand, within DZA65_RS02700 at 579.602 kb on - strand, within DZA65_RS02700 at 579.697 kb on + strand, within DZA65_RS02700 at 579.767 kb on + strand, within DZA65_RS02700 at 579.767 kb on + strand, within DZA65_RS02700 at 579.767 kb on + strand, within DZA65_RS02700 at 579.767 kb on + strand, within DZA65_RS02700 at 579.768 kb on - strand, within DZA65_RS02700 at 579.768 kb on - strand, within DZA65_RS02700 at 579.768 kb on - strand, within DZA65_RS02700 at 579.768 kb on - strand, within DZA65_RS02700 at 579.768 kb on - strand, within DZA65_RS02700 at 579.768 kb on - strand, within DZA65_RS02700 at 579.768 kb on - strand, within DZA65_RS02700 at 579.768 kb on - strand, within DZA65_RS02700 at 579.810 kb on + strand, within DZA65_RS02700 at 579.810 kb on + strand, within DZA65_RS02700 at 579.811 kb on - strand, within DZA65_RS02700 at 580.046 kb on + strand, within DZA65_RS02700 at 580.046 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.053 kb on + strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.054 kb on - strand, within DZA65_RS02700 at 580.087 kb on + strand, within DZA65_RS02700 at 580.087 kb on + strand, within DZA65_RS02700 at 580.088 kb on - strand, within DZA65_RS02700 at 580.272 kb on + strand, within DZA65_RS02700 at 580.272 kb on + strand, within DZA65_RS02700 at 580.272 kb on + strand, within DZA65_RS02700 at 580.272 kb on + strand, within DZA65_RS02700 at 580.272 kb on + strand, within DZA65_RS02700 at 580.272 kb on + strand, within DZA65_RS02700 at 580.273 kb on - strand, within DZA65_RS02700 at 580.273 kb on - strand, within DZA65_RS02700 at 580.273 kb on - strand, within DZA65_RS02700 at 580.273 kb on - strand, within DZA65_RS02700 at 580.273 kb on - strand, within DZA65_RS02700 at 580.273 kb on - strand, within DZA65_RS02700 at 580.273 kb on - strand, within DZA65_RS02700 at 580.273 kb on - strand, within DZA65_RS02700 at 580.429 kb on + strand at 580.430 kb on - strand at 580.430 kb on - strand at 580.464 kb on - strand at 580.464 kb on - strand at 580.522 kb on - strand at 580.522 kb on - strand at 580.522 kb on - strand at 580.524 kb on + strand at 580.525 kb on - strand at 580.541 kb on + strand at 580.541 kb on + strand at 580.541 kb on + strand at 580.541 kb on + strand at 580.541 kb on + strand at 580.541 kb on + strand at 580.541 kb on + strand at 580.541 kb on + strand at 580.541 kb on + strand at 580.542 kb on - strand at 580.542 kb on - strand at 580.542 kb on - strand at 580.542 kb on - strand at 580.542 kb on - strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.544 kb on + strand at 580.545 kb on - strand at 580.545 kb on - strand at 580.545 kb on - strand at 580.545 kb on - strand at 580.545 kb on - strand at 580.545 kb on - strand at 580.545 kb on - strand at 580.548 kb on + strand at 580.548 kb on + strand at 580.548 kb on + strand at 580.548 kb on + strand at 580.548 kb on + strand at 580.549 kb on - strand at 580.549 kb on - strand at 580.549 kb on - strand at 580.549 kb on - strand at 580.549 kb on - strand at 580.549 kb on - strand at 580.549 kb on - strand at 580.625 kb on - strand at 580.810 kb on - strand at 580.953 kb on + strand at 581.000 kb on - strand at 581.003 kb on - strand at 581.157 kb on - strand, within DZA65_RS02705 at 581.231 kb on + strand, within DZA65_RS02705 at 581.232 kb on - strand, within DZA65_RS02705 at 581.311 kb on + strand, within DZA65_RS02705 at 581.366 kb on + strand, within DZA65_RS02705 at 581.366 kb on + strand, within DZA65_RS02705 at 581.367 kb on - strand, within DZA65_RS02705 at 581.382 kb on + strand, within DZA65_RS02705 at 581.383 kb on - strand, within DZA65_RS02705 at 581.383 kb on - strand, within DZA65_RS02705 at 581.383 kb on - strand, within DZA65_RS02705 at 581.434 kb on + strand, within DZA65_RS02705 at 581.435 kb on - strand, within DZA65_RS02705
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 578,453 - DZA65_RS02690 0.46 +0.2 578,454 + DZA65_RS02690 0.46 +0.9 578,454 + DZA65_RS02690 0.46 -0.5 578,454 + DZA65_RS02690 0.46 -0.7 578,454 + DZA65_RS02690 0.46 -0.4 578,454 + DZA65_RS02690 0.46 +0.2 578,454 + DZA65_RS02690 0.46 -0.8 578,454 + DZA65_RS02690 0.46 -1.4 578,454 + DZA65_RS02690 0.46 -0.4 578,454 + DZA65_RS02690 0.46 +0.1 578,454 + DZA65_RS02690 0.46 +1.1 578,454 + DZA65_RS02690 0.46 -1.8 578,454 + DZA65_RS02690 0.46 -1.4 578,454 + DZA65_RS02690 0.46 +1.6 578,454 + DZA65_RS02690 0.46 -2.8 578,455 - DZA65_RS02690 0.46 -1.9 578,455 - DZA65_RS02690 0.46 -1.6 578,455 - DZA65_RS02690 0.46 +0.9 578,455 - DZA65_RS02690 0.46 -2.6 578,455 - DZA65_RS02690 0.46 -2.1 578,455 - DZA65_RS02690 0.46 +0.9 578,455 - DZA65_RS02690 0.46 +0.3 578,455 - DZA65_RS02690 0.46 -1.4 578,455 - DZA65_RS02690 0.46 -1.3 578,455 - DZA65_RS02690 0.46 +1.0 578,455 - DZA65_RS02690 0.46 +0.3 578,455 - DZA65_RS02690 0.46 +0.5 578,503 + DZA65_RS02690 0.51 -1.4 578,667 + DZA65_RS02690 0.67 -2.1 578,735 - DZA65_RS02690 0.74 -2.1 578,785 + DZA65_RS02690 0.78 -0.3 578,786 - DZA65_RS02690 0.79 -1.7 578,786 - DZA65_RS02690 0.79 -0.8 578,827 + DZA65_RS02690 0.83 +0.8 578,827 + DZA65_RS02690 0.83 -0.3 578,827 + DZA65_RS02690 0.83 -1.3 578,827 + DZA65_RS02690 0.83 +0.6 578,827 + DZA65_RS02690 0.83 -0.4 578,828 - DZA65_RS02690 0.83 -0.6 578,828 - DZA65_RS02690 0.83 -0.4 578,829 + DZA65_RS02690 0.83 -0.2 578,830 - DZA65_RS02690 0.83 +1.9 578,998 + -1.7 578,998 + +0.9 578,999 - +0.2 579,024 + +0.3 579,024 + -0.7 579,024 + -1.4 579,024 + +1.4 579,024 + -0.4 579,025 - +0.2 579,025 - -1.0 579,025 - -0.6 579,025 - -1.4 579,050 + +0.6 579,050 + +0.3 579,051 - -0.2 579,051 - -1.6 579,111 - -2.8 579,113 + -1.1 579,189 - -1.1 579,195 + +0.9 579,195 + -1.3 579,224 - +0.5 579,309 - +0.2 579,309 - +1.3 579,309 - +1.0 579,367 + +0.0 579,367 + +0.2 579,368 - -0.3 579,420 + DZA65_RS02700 0.12 +1.1 579,420 + DZA65_RS02700 0.12 -0.1 579,421 - DZA65_RS02700 0.12 +0.1 579,421 - DZA65_RS02700 0.12 +0.7 579,460 + DZA65_RS02700 0.15 -0.9 579,460 + DZA65_RS02700 0.15 -0.0 579,460 + DZA65_RS02700 0.15 -1.1 579,461 - DZA65_RS02700 0.15 -0.0 579,461 - DZA65_RS02700 0.15 -1.7 579,461 - DZA65_RS02700 0.15 -0.1 579,464 - DZA65_RS02700 0.16 +0.6 579,464 - DZA65_RS02700 0.16 -0.7 579,513 - DZA65_RS02700 0.20 -2.4 579,542 + DZA65_RS02700 0.22 -3.6 579,542 + DZA65_RS02700 0.22 +0.1 579,542 + DZA65_RS02700 0.22 +0.5 579,542 + DZA65_RS02700 0.22 -1.9 579,543 - DZA65_RS02700 0.22 +2.6 579,543 - DZA65_RS02700 0.22 +1.1 579,543 - DZA65_RS02700 0.22 +0.2 579,543 - DZA65_RS02700 0.22 +0.9 579,601 + DZA65_RS02700 0.27 +0.1 579,602 - DZA65_RS02700 0.27 -1.6 579,697 + DZA65_RS02700 0.35 +0.4 579,767 + DZA65_RS02700 0.41 +1.0 579,767 + DZA65_RS02700 0.41 -1.4 579,767 + DZA65_RS02700 0.41 -1.1 579,767 + DZA65_RS02700 0.41 +0.2 579,768 - DZA65_RS02700 0.41 -0.7 579,768 - DZA65_RS02700 0.41 +0.3 579,768 - DZA65_RS02700 0.41 +0.4 579,768 - DZA65_RS02700 0.41 +0.9 579,768 - DZA65_RS02700 0.41 +1.1 579,768 - DZA65_RS02700 0.41 +0.2 579,768 - DZA65_RS02700 0.41 -0.1 579,768 - DZA65_RS02700 0.41 +0.3 579,810 + DZA65_RS02700 0.45 +0.1 579,810 + DZA65_RS02700 0.45 +0.6 579,811 - DZA65_RS02700 0.45 -0.2 580,046 + DZA65_RS02700 0.64 -0.9 580,046 + DZA65_RS02700 0.64 +1.1 580,053 + DZA65_RS02700 0.65 -2.7 580,053 + DZA65_RS02700 0.65 -0.9 580,053 + DZA65_RS02700 0.65 +0.2 580,053 + DZA65_RS02700 0.65 +0.3 580,053 + DZA65_RS02700 0.65 +0.9 580,053 + DZA65_RS02700 0.65 +2.2 580,053 + DZA65_RS02700 0.65 -0.1 580,053 + DZA65_RS02700 0.65 +0.7 580,053 + DZA65_RS02700 0.65 -2.1 580,053 + DZA65_RS02700 0.65 -0.1 580,053 + DZA65_RS02700 0.65 -0.4 580,053 + DZA65_RS02700 0.65 -0.9 580,053 + DZA65_RS02700 0.65 -1.7 580,053 + DZA65_RS02700 0.65 +0.2 580,053 + DZA65_RS02700 0.65 -2.0 580,053 + DZA65_RS02700 0.65 -0.3 580,053 + DZA65_RS02700 0.65 -0.9 580,054 - DZA65_RS02700 0.65 +1.4 580,054 - DZA65_RS02700 0.65 +0.2 580,054 - DZA65_RS02700 0.65 -0.4 580,054 - DZA65_RS02700 0.65 -2.0 580,054 - DZA65_RS02700 0.65 +0.3 580,054 - DZA65_RS02700 0.65 -1.1 580,054 - DZA65_RS02700 0.65 -0.7 580,054 - DZA65_RS02700 0.65 -1.1 580,054 - DZA65_RS02700 0.65 -1.7 580,054 - DZA65_RS02700 0.65 -1.0 580,054 - DZA65_RS02700 0.65 +0.9 580,054 - DZA65_RS02700 0.65 -1.9 580,054 - DZA65_RS02700 0.65 +0.8 580,054 - DZA65_RS02700 0.65 -0.1 580,087 + DZA65_RS02700 0.68 -0.1 580,087 + DZA65_RS02700 0.68 +0.5 580,088 - DZA65_RS02700 0.68 +1.3 580,272 + DZA65_RS02700 0.83 +1.2 580,272 + DZA65_RS02700 0.83 +0.0 580,272 + DZA65_RS02700 0.83 +1.6 580,272 + DZA65_RS02700 0.83 -0.0 580,272 + DZA65_RS02700 0.83 +0.2 580,272 + DZA65_RS02700 0.83 -1.1 580,273 - DZA65_RS02700 0.83 -0.2 580,273 - DZA65_RS02700 0.83 -1.1 580,273 - DZA65_RS02700 0.83 +1.8 580,273 - DZA65_RS02700 0.83 +0.5 580,273 - DZA65_RS02700 0.83 +1.9 580,273 - DZA65_RS02700 0.83 -0.5 580,273 - DZA65_RS02700 0.83 +0.5 580,273 - DZA65_RS02700 0.83 +2.8 580,429 + -0.7 580,430 - +0.0 580,430 - -0.9 580,464 - -0.4 580,464 - -0.4 580,522 - -2.4 580,522 - -0.3 580,522 - +1.1 580,524 + -2.1 580,525 - -1.4 580,541 + +0.3 580,541 + +0.1 580,541 + -0.7 580,541 + +1.4 580,541 + +0.5 580,541 + -1.4 580,541 + +0.2 580,541 + -0.1 580,541 + +1.3 580,542 - +0.4 580,542 - +1.3 580,542 - -1.9 580,542 - +0.7 580,542 - +0.9 580,544 + +0.4 580,544 + -1.3 580,544 + +0.3 580,544 + -0.4 580,544 + -0.1 580,544 + +0.8 580,544 + -0.9 580,544 + +2.1 580,544 + -0.5 580,544 + +0.2 580,544 + +0.3 580,544 + -0.5 580,544 + -2.6 580,544 + +2.5 580,544 + -0.2 580,544 + +1.6 580,544 + -1.8 580,545 - +0.9 580,545 - -0.5 580,545 - -1.1 580,545 - -0.8 580,545 - +0.0 580,545 - -0.5 580,545 - +0.7 580,548 + -0.7 580,548 + -2.3 580,548 + +1.2 580,548 + -0.1 580,548 + +1.4 580,549 - +0.9 580,549 - -0.2 580,549 - -0.0 580,549 - -0.0 580,549 - +0.8 580,549 - +1.2 580,549 - +0.5 580,625 - -0.7 580,810 - -1.6 580,953 + +0.6 581,000 - +1.0 581,003 - +2.6 581,157 - DZA65_RS02705 0.21 +2.5 581,231 + DZA65_RS02705 0.26 +0.2 581,232 - DZA65_RS02705 0.26 +1.4 581,311 + DZA65_RS02705 0.31 +0.4 581,366 + DZA65_RS02705 0.35 -0.5 581,366 + DZA65_RS02705 0.35 +0.2 581,367 - DZA65_RS02705 0.35 -1.5 581,382 + DZA65_RS02705 0.37 -0.4 581,383 - DZA65_RS02705 0.37 +0.9 581,383 - DZA65_RS02705 0.37 -0.9 581,383 - DZA65_RS02705 0.37 -1.4 581,434 + DZA65_RS02705 0.40 +0.9 581,435 - DZA65_RS02705 0.40 +0.9
Or see this region's nucleotide sequence