Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02450 and DZA65_RS02455 overlap by 4 nucleotides DZA65_RS02455 and DZA65_RS02460 are separated by 39 nucleotides DZA65_RS02460 and DZA65_RS02465 are separated by 234 nucleotides
DZA65_RS02450: DZA65_RS02450 - 2-octaprenyl-6-methoxyphenyl hydroxylase, at 528,311 to 529,489
_RS02450
DZA65_RS02455: DZA65_RS02455 - Xaa-Pro aminopeptidase, at 529,486 to 530,814
_RS02455
DZA65_RS02460: DZA65_RS02460 - YecA family protein, at 530,854 to 531,438
_RS02460
DZA65_RS02465: DZA65_RS02465 - cell division protein ZapA, at 531,673 to 532,002
_RS02465
Position (kb) 529
530
531 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 529.623 kb on - strand, within DZA65_RS02455 at 529.656 kb on - strand, within DZA65_RS02455 at 529.656 kb on - strand, within DZA65_RS02455 at 529.656 kb on - strand, within DZA65_RS02455 at 529.656 kb on - strand, within DZA65_RS02455 at 529.656 kb on - strand, within DZA65_RS02455 at 529.656 kb on - strand, within DZA65_RS02455 at 529.656 kb on - strand, within DZA65_RS02455 at 529.656 kb on - strand, within DZA65_RS02455 at 529.656 kb on - strand, within DZA65_RS02455 at 529.656 kb on - strand, within DZA65_RS02455 at 529.774 kb on - strand, within DZA65_RS02455 at 529.774 kb on - strand, within DZA65_RS02455 at 529.774 kb on - strand, within DZA65_RS02455 at 529.879 kb on + strand, within DZA65_RS02455 at 530.016 kb on - strand, within DZA65_RS02455 at 530.025 kb on - strand, within DZA65_RS02455 at 530.088 kb on - strand, within DZA65_RS02455 at 530.088 kb on - strand, within DZA65_RS02455 at 530.088 kb on - strand, within DZA65_RS02455 at 530.088 kb on - strand, within DZA65_RS02455 at 530.088 kb on - strand, within DZA65_RS02455 at 530.133 kb on - strand, within DZA65_RS02455 at 530.133 kb on - strand, within DZA65_RS02455 at 530.133 kb on - strand, within DZA65_RS02455 at 530.133 kb on - strand, within DZA65_RS02455 at 530.133 kb on - strand, within DZA65_RS02455 at 530.193 kb on - strand, within DZA65_RS02455 at 530.305 kb on - strand, within DZA65_RS02455 at 530.305 kb on - strand at 530.305 kb on - strand, within DZA65_RS02455 at 530.312 kb on - strand, within DZA65_RS02455 at 530.415 kb on - strand, within DZA65_RS02455 at 530.439 kb on - strand, within DZA65_RS02455 at 530.439 kb on - strand, within DZA65_RS02455 at 530.670 kb on - strand, within DZA65_RS02455 at 530.700 kb on - strand at 530.716 kb on - strand at 530.716 kb on - strand at 530.799 kb on - strand at 530.799 kb on - strand at 530.799 kb on - strand at 530.799 kb on - strand at 530.816 kb on - strand at 530.855 kb on + strand at 530.856 kb on - strand at 530.856 kb on - strand at 530.938 kb on + strand, within DZA65_RS02460 at 530.938 kb on + strand, within DZA65_RS02460 at 530.939 kb on - strand, within DZA65_RS02460 at 530.939 kb on - strand, within DZA65_RS02460 at 530.939 kb on - strand, within DZA65_RS02460 at 530.939 kb on - strand, within DZA65_RS02460 at 530.942 kb on + strand, within DZA65_RS02460 at 530.942 kb on + strand, within DZA65_RS02460 at 530.942 kb on + strand, within DZA65_RS02460 at 530.942 kb on + strand, within DZA65_RS02460 at 530.942 kb on + strand, within DZA65_RS02460 at 530.943 kb on - strand, within DZA65_RS02460 at 530.943 kb on - strand, within DZA65_RS02460 at 530.943 kb on - strand, within DZA65_RS02460 at 530.943 kb on - strand, within DZA65_RS02460 at 530.943 kb on - strand, within DZA65_RS02460 at 530.943 kb on - strand, within DZA65_RS02460 at 530.943 kb on - strand, within DZA65_RS02460 at 531.022 kb on + strand, within DZA65_RS02460 at 531.022 kb on + strand, within DZA65_RS02460 at 531.022 kb on + strand, within DZA65_RS02460 at 531.023 kb on - strand, within DZA65_RS02460 at 531.023 kb on - strand, within DZA65_RS02460 at 531.023 kb on - strand at 531.023 kb on - strand, within DZA65_RS02460 at 531.023 kb on - strand, within DZA65_RS02460 at 531.225 kb on - strand, within DZA65_RS02460 at 531.225 kb on - strand, within DZA65_RS02460 at 531.225 kb on - strand, within DZA65_RS02460 at 531.225 kb on - strand, within DZA65_RS02460 at 531.331 kb on + strand, within DZA65_RS02460 at 531.331 kb on + strand, within DZA65_RS02460 at 531.332 kb on - strand, within DZA65_RS02460 at 531.332 kb on - strand, within DZA65_RS02460 at 531.392 kb on - strand at 531.392 kb on - strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.423 kb on + strand at 531.424 kb on - strand at 531.424 kb on - strand at 531.430 kb on + strand at 531.431 kb on - strand at 531.431 kb on - strand at 531.432 kb on + strand at 531.432 kb on + strand at 531.433 kb on - strand at 531.433 kb on - strand at 531.433 kb on - strand at 531.433 kb on - strand at 531.473 kb on - strand at 531.473 kb on - strand at 531.473 kb on - strand at 531.478 kb on - strand at 531.478 kb on - strand at 531.496 kb on + strand at 531.497 kb on - strand at 531.499 kb on - strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.536 kb on + strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.537 kb on - strand at 531.543 kb on + strand at 531.543 kb on + strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.544 kb on - strand at 531.546 kb on + strand at 531.546 kb on + strand at 531.546 kb on + strand at 531.547 kb on - strand at 531.547 kb on - strand at 531.547 kb on - strand at 531.547 kb on - strand at 531.552 kb on + strand at 531.552 kb on + strand at 531.552 kb on + strand at 531.552 kb on + strand at 531.553 kb on - strand at 531.553 kb on - strand at 531.553 kb on - strand at 531.553 kb on - strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.554 kb on + strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.555 kb on - strand at 531.568 kb on + strand at 531.568 kb on + strand at 531.579 kb on + strand at 531.579 kb on + strand at 531.579 kb on + strand at 531.579 kb on + strand at 531.580 kb on - strand at 531.580 kb on - strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.581 kb on + strand at 531.583 kb on + strand at 531.583 kb on + strand at 531.583 kb on + strand at 531.583 kb on + strand at 531.774 kb on + strand, within DZA65_RS02465
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 529,623 - DZA65_RS02455 0.10 -1.1 529,656 - DZA65_RS02455 0.13 -0.2 529,656 - DZA65_RS02455 0.13 -1.9 529,656 - DZA65_RS02455 0.13 -0.8 529,656 - DZA65_RS02455 0.13 -0.1 529,656 - DZA65_RS02455 0.13 -0.1 529,656 - DZA65_RS02455 0.13 -2.2 529,656 - DZA65_RS02455 0.13 +0.1 529,656 - DZA65_RS02455 0.13 +0.2 529,656 - DZA65_RS02455 0.13 -2.8 529,656 - DZA65_RS02455 0.13 -0.7 529,774 - DZA65_RS02455 0.22 -1.5 529,774 - DZA65_RS02455 0.22 +1.0 529,774 - DZA65_RS02455 0.22 -0.4 529,879 + DZA65_RS02455 0.30 -0.7 530,016 - DZA65_RS02455 0.40 +0.5 530,025 - DZA65_RS02455 0.41 -0.9 530,088 - DZA65_RS02455 0.45 -0.4 530,088 - DZA65_RS02455 0.45 -2.2 530,088 - DZA65_RS02455 0.45 -0.1 530,088 - DZA65_RS02455 0.45 -1.4 530,088 - DZA65_RS02455 0.45 -1.1 530,133 - DZA65_RS02455 0.49 -0.7 530,133 - DZA65_RS02455 0.49 -0.4 530,133 - DZA65_RS02455 0.49 +1.3 530,133 - DZA65_RS02455 0.49 -0.1 530,133 - DZA65_RS02455 0.49 -0.3 530,193 - DZA65_RS02455 0.53 -0.7 530,305 - DZA65_RS02455 0.62 +0.7 530,305 - +1.9 530,305 - DZA65_RS02455 0.62 +1.2 530,312 - DZA65_RS02455 0.62 -0.1 530,415 - DZA65_RS02455 0.70 +1.7 530,439 - DZA65_RS02455 0.72 +0.2 530,439 - DZA65_RS02455 0.72 +1.2 530,670 - DZA65_RS02455 0.89 +0.2 530,700 - -1.8 530,716 - +1.2 530,716 - -0.0 530,799 - -1.7 530,799 - +1.3 530,799 - +2.4 530,799 - -1.2 530,816 - +1.0 530,855 + -1.1 530,856 - +0.3 530,856 - -2.5 530,938 + DZA65_RS02460 0.14 +0.1 530,938 + DZA65_RS02460 0.14 +2.8 530,939 - DZA65_RS02460 0.15 +2.2 530,939 - DZA65_RS02460 0.15 -0.8 530,939 - DZA65_RS02460 0.15 +2.2 530,939 - DZA65_RS02460 0.15 +0.8 530,942 + DZA65_RS02460 0.15 +0.2 530,942 + DZA65_RS02460 0.15 -2.5 530,942 + DZA65_RS02460 0.15 +0.1 530,942 + DZA65_RS02460 0.15 +1.0 530,942 + DZA65_RS02460 0.15 -0.2 530,943 - DZA65_RS02460 0.15 -1.1 530,943 - DZA65_RS02460 0.15 -1.2 530,943 - DZA65_RS02460 0.15 -0.7 530,943 - DZA65_RS02460 0.15 +0.5 530,943 - DZA65_RS02460 0.15 +0.0 530,943 - DZA65_RS02460 0.15 -0.7 530,943 - DZA65_RS02460 0.15 +0.2 531,022 + DZA65_RS02460 0.29 +1.1 531,022 + DZA65_RS02460 0.29 -0.7 531,022 + DZA65_RS02460 0.29 -0.4 531,023 - DZA65_RS02460 0.29 -1.4 531,023 - DZA65_RS02460 0.29 +0.5 531,023 - -0.1 531,023 - DZA65_RS02460 0.29 -1.9 531,023 - DZA65_RS02460 0.29 +1.2 531,225 - DZA65_RS02460 0.63 -1.7 531,225 - DZA65_RS02460 0.63 -0.5 531,225 - DZA65_RS02460 0.63 -0.1 531,225 - DZA65_RS02460 0.63 +1.4 531,331 + DZA65_RS02460 0.82 +0.0 531,331 + DZA65_RS02460 0.82 -0.7 531,332 - DZA65_RS02460 0.82 -0.5 531,332 - DZA65_RS02460 0.82 -1.1 531,392 - -1.1 531,392 - +0.9 531,423 + -1.1 531,423 + +1.5 531,423 + +1.3 531,423 + -1.4 531,423 + +0.8 531,424 - -1.7 531,424 - +0.3 531,430 + -1.7 531,431 - +0.9 531,431 - +0.1 531,432 + -0.1 531,432 + -0.1 531,433 - -1.0 531,433 - +1.4 531,433 - -0.2 531,433 - +1.5 531,473 - -0.1 531,473 - +0.2 531,473 - +0.0 531,478 - +1.9 531,478 - +0.5 531,496 + -2.7 531,497 - -0.1 531,499 - +0.9 531,536 + +0.1 531,536 + -0.1 531,536 + +0.5 531,536 + -1.9 531,536 + +1.5 531,536 + +1.6 531,536 + +1.3 531,536 + +0.4 531,536 + -0.7 531,536 + +0.1 531,537 - -0.2 531,537 - +0.2 531,537 - +0.8 531,537 - +1.2 531,537 - +0.6 531,537 - +0.2 531,537 - -0.4 531,537 - -0.4 531,543 + -2.2 531,543 + +1.7 531,544 - +1.7 531,544 - +0.0 531,544 - -0.2 531,544 - -0.2 531,544 - -2.4 531,546 + -2.5 531,546 + -1.4 531,546 + -1.4 531,547 - +0.7 531,547 - +1.2 531,547 - -0.1 531,547 - -0.3 531,552 + -1.7 531,552 + -0.5 531,552 + -0.0 531,552 + -1.7 531,553 - -1.1 531,553 - -0.7 531,553 - +0.9 531,553 - +0.2 531,554 + -0.3 531,554 + +0.2 531,554 + +0.9 531,554 + +0.5 531,554 + +2.2 531,554 + +0.0 531,554 + -1.2 531,554 + -0.7 531,554 + +0.9 531,554 + +0.3 531,554 + -1.2 531,554 + +2.9 531,554 + +0.0 531,554 + -1.7 531,554 + -2.1 531,555 - +0.7 531,555 - -0.2 531,555 - +0.0 531,555 - -0.4 531,555 - +0.2 531,555 - +0.9 531,555 - +2.6 531,555 - -1.7 531,555 - +1.5 531,555 - +0.1 531,555 - -0.7 531,555 - -0.3 531,555 - +1.1 531,555 - +0.7 531,568 + -1.1 531,568 + +0.1 531,579 + -1.9 531,579 + +0.8 531,579 + +2.1 531,579 + -0.1 531,580 - -1.4 531,580 - -0.7 531,581 + -1.9 531,581 + -0.8 531,581 + +0.3 531,581 + -2.4 531,581 + -0.8 531,581 + -1.9 531,581 + -1.2 531,581 + -0.7 531,581 + -0.1 531,581 + -1.1 531,581 + -1.7 531,583 + -1.5 531,583 + -1.1 531,583 + -1.1 531,583 + +2.2 531,774 + DZA65_RS02465 0.31 -0.4
Or see this region's nucleotide sequence