Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS02230 and DZA65_RS02235 are separated by 145 nucleotides DZA65_RS02235 and DZA65_RS02240 are separated by 75 nucleotides DZA65_RS02240 and DZA65_RS02245 are separated by 344 nucleotides
DZA65_RS02230: DZA65_RS02230 - MFS transporter, at 484,632 to 486,026
_RS02230
DZA65_RS02235: DZA65_RS02235 - HNH endonuclease, at 486,172 to 486,549
_RS02235
DZA65_RS02240: DZA65_RS02240 - DeoR/GlpR transcriptional regulator, at 486,625 to 487,416
_RS02240
DZA65_RS02245: DZA65_RS02245 - transketolase, at 487,761 to 488,564
_RS02245
Position (kb) 486
487
488 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.656 kb on + strand, within DZA65_RS02230 at 485.657 kb on - strand, within DZA65_RS02230 at 485.657 kb on - strand at 485.657 kb on - strand, within DZA65_RS02230 at 485.657 kb on - strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.663 kb on + strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.664 kb on - strand, within DZA65_RS02230 at 485.666 kb on + strand, within DZA65_RS02230 at 485.731 kb on - strand, within DZA65_RS02230 at 485.849 kb on + strand, within DZA65_RS02230 at 486.052 kb on + strand at 486.053 kb on - strand at 486.053 kb on - strand at 486.094 kb on - strand at 486.094 kb on - strand at 486.094 kb on - strand at 486.096 kb on + strand at 486.096 kb on + strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.097 kb on - strand at 486.102 kb on - strand at 486.102 kb on - strand at 486.133 kb on + strand at 486.134 kb on - strand at 486.149 kb on - strand at 486.149 kb on - strand at 486.149 kb on - strand at 486.166 kb on + strand at 486.166 kb on + strand at 486.167 kb on - strand at 486.167 kb on - strand at 486.167 kb on - strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.171 kb on + strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.172 kb on - strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.175 kb on + strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.176 kb on - strand at 486.183 kb on + strand at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.210 kb on + strand, within DZA65_RS02235 at 486.211 kb on - strand, within DZA65_RS02235 at 486.211 kb on - strand, within DZA65_RS02235 at 486.248 kb on + strand, within DZA65_RS02235 at 486.255 kb on + strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.256 kb on - strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.302 kb on + strand, within DZA65_RS02235 at 486.303 kb on - strand, within DZA65_RS02235 at 486.303 kb on - strand, within DZA65_RS02235 at 486.313 kb on - strand, within DZA65_RS02235 at 486.313 kb on - strand, within DZA65_RS02235 at 486.313 kb on - strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.321 kb on + strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.322 kb on - strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.402 kb on + strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.403 kb on - strand, within DZA65_RS02235 at 486.406 kb on - strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.435 kb on + strand, within DZA65_RS02235 at 486.436 kb on - strand, within DZA65_RS02235 at 486.511 kb on + strand, within DZA65_RS02235 at 486.511 kb on + strand, within DZA65_RS02235 at 486.512 kb on - strand at 486.512 kb on - strand at 486.512 kb on - strand at 486.514 kb on - strand at 486.514 kb on - strand at 486.598 kb on - strand at 486.598 kb on - strand at 486.600 kb on + strand at 486.601 kb on - strand at 486.707 kb on + strand, within DZA65_RS02240 at 486.714 kb on + strand, within DZA65_RS02240 at 486.715 kb on - strand, within DZA65_RS02240 at 486.757 kb on + strand, within DZA65_RS02240 at 486.757 kb on + strand, within DZA65_RS02240 at 486.758 kb on - strand, within DZA65_RS02240 at 486.758 kb on - strand, within DZA65_RS02240 at 486.782 kb on + strand, within DZA65_RS02240 at 486.782 kb on + strand, within DZA65_RS02240 at 486.782 kb on + strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 486.783 kb on - strand, within DZA65_RS02240 at 487.009 kb on - strand, within DZA65_RS02240 at 487.062 kb on + strand, within DZA65_RS02240 at 487.062 kb on + strand, within DZA65_RS02240 at 487.062 kb on + strand, within DZA65_RS02240 at 487.063 kb on - strand, within DZA65_RS02240 at 487.235 kb on + strand, within DZA65_RS02240 at 487.236 kb on - strand, within DZA65_RS02240 at 487.239 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.251 kb on - strand, within DZA65_RS02240 at 487.386 kb on + strand at 487.633 kb on + strand at 487.634 kb on - strand at 487.634 kb on - strand at 487.657 kb on - strand at 487.757 kb on - strand at 487.768 kb on + strand at 487.768 kb on + strand at 487.768 kb on + strand at 487.769 kb on - strand at 487.769 kb on - strand at 487.769 kb on - strand at 487.806 kb on + strand at 487.807 kb on - strand at 487.807 kb on - strand at 487.807 kb on - strand at 487.807 kb on - strand at 487.875 kb on - strand, within DZA65_RS02245 at 487.875 kb on - strand, within DZA65_RS02245 at 487.875 kb on - strand, within DZA65_RS02245 at 487.875 kb on - strand, within DZA65_RS02245 at 488.117 kb on - strand, within DZA65_RS02245 at 488.117 kb on - strand, within DZA65_RS02245
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 485,656 + DZA65_RS02230 0.73 -0.6 485,656 + DZA65_RS02230 0.73 +0.8 485,656 + DZA65_RS02230 0.73 -0.9 485,656 + DZA65_RS02230 0.73 -1.1 485,656 + -1.1 485,656 + DZA65_RS02230 0.73 -0.6 485,656 + DZA65_RS02230 0.73 +0.8 485,656 + DZA65_RS02230 0.73 -2.5 485,657 - DZA65_RS02230 0.73 +1.0 485,657 - -0.6 485,657 - DZA65_RS02230 0.73 -1.1 485,657 - DZA65_RS02230 0.73 -1.4 485,663 + DZA65_RS02230 0.74 -1.0 485,663 + DZA65_RS02230 0.74 -1.4 485,663 + DZA65_RS02230 0.74 -0.2 485,663 + DZA65_RS02230 0.74 +0.1 485,663 + DZA65_RS02230 0.74 +0.8 485,663 + DZA65_RS02230 0.74 +0.7 485,663 + DZA65_RS02230 0.74 -0.9 485,664 - DZA65_RS02230 0.74 -1.6 485,664 - DZA65_RS02230 0.74 -0.6 485,664 - DZA65_RS02230 0.74 +0.4 485,664 - DZA65_RS02230 0.74 +0.9 485,664 - DZA65_RS02230 0.74 -1.6 485,666 + DZA65_RS02230 0.74 +0.1 485,731 - DZA65_RS02230 0.79 +0.5 485,849 + DZA65_RS02230 0.87 +1.4 486,052 + +1.3 486,053 - +0.5 486,053 - +0.5 486,094 - -0.4 486,094 - +1.3 486,094 - +0.6 486,096 + +0.5 486,096 + +0.1 486,097 - -0.8 486,097 - +0.8 486,097 - -0.6 486,097 - -0.1 486,097 - -1.4 486,097 - -1.1 486,097 - -2.1 486,097 - -1.5 486,102 - +2.3 486,102 - -2.0 486,133 + -1.3 486,134 - -0.6 486,149 - -0.1 486,149 - +0.4 486,149 - -2.1 486,166 + -0.6 486,166 + -0.4 486,167 - +0.5 486,167 - -1.4 486,167 - +2.0 486,171 + -0.5 486,171 + +0.9 486,171 + -0.2 486,171 + -0.6 486,171 + +0.6 486,171 + -1.1 486,171 + +0.4 486,171 + +0.1 486,171 + -1.2 486,171 + +1.0 486,172 - -1.6 486,172 - -1.1 486,172 - -1.1 486,172 - +0.4 486,172 - -0.9 486,172 - -1.2 486,172 - +0.4 486,172 - -0.6 486,172 - -1.2 486,172 - -0.6 486,175 + -1.0 486,175 + -1.6 486,175 + +0.7 486,175 + +0.5 486,175 + -0.4 486,175 + -0.6 486,176 - -0.1 486,176 - +0.2 486,176 - -0.6 486,176 - -3.1 486,176 - +0.7 486,176 - -1.9 486,183 + +0.9 486,210 + DZA65_RS02235 0.10 -0.4 486,210 + DZA65_RS02235 0.10 -0.9 486,210 + DZA65_RS02235 0.10 -1.5 486,210 + DZA65_RS02235 0.10 -0.5 486,210 + DZA65_RS02235 0.10 -1.9 486,211 - DZA65_RS02235 0.10 +0.9 486,211 - DZA65_RS02235 0.10 -0.4 486,248 + DZA65_RS02235 0.20 -0.1 486,255 + DZA65_RS02235 0.22 +0.7 486,256 - DZA65_RS02235 0.22 -0.7 486,256 - DZA65_RS02235 0.22 -0.1 486,256 - DZA65_RS02235 0.22 +0.8 486,256 - DZA65_RS02235 0.22 -0.3 486,256 - DZA65_RS02235 0.22 -1.6 486,302 + DZA65_RS02235 0.34 -0.2 486,302 + DZA65_RS02235 0.34 -0.3 486,302 + DZA65_RS02235 0.34 +0.9 486,302 + DZA65_RS02235 0.34 -1.2 486,303 - DZA65_RS02235 0.35 -0.1 486,303 - DZA65_RS02235 0.35 +0.6 486,313 - DZA65_RS02235 0.37 +0.5 486,313 - DZA65_RS02235 0.37 +0.1 486,313 - DZA65_RS02235 0.37 +0.9 486,321 + DZA65_RS02235 0.39 -0.6 486,321 + DZA65_RS02235 0.39 -0.3 486,321 + DZA65_RS02235 0.39 -1.1 486,321 + DZA65_RS02235 0.39 +0.7 486,322 - DZA65_RS02235 0.40 +1.2 486,322 - DZA65_RS02235 0.40 +1.1 486,322 - DZA65_RS02235 0.40 +2.1 486,322 - DZA65_RS02235 0.40 -1.2 486,322 - DZA65_RS02235 0.40 +0.0 486,322 - DZA65_RS02235 0.40 -0.2 486,322 - DZA65_RS02235 0.40 -2.4 486,322 - DZA65_RS02235 0.40 -0.9 486,402 + DZA65_RS02235 0.61 -1.0 486,402 + DZA65_RS02235 0.61 +0.5 486,402 + DZA65_RS02235 0.61 +1.2 486,402 + DZA65_RS02235 0.61 +0.0 486,403 - DZA65_RS02235 0.61 +0.3 486,403 - DZA65_RS02235 0.61 -0.9 486,403 - DZA65_RS02235 0.61 -0.7 486,403 - DZA65_RS02235 0.61 -0.5 486,403 - DZA65_RS02235 0.61 -0.5 486,403 - DZA65_RS02235 0.61 +0.5 486,403 - DZA65_RS02235 0.61 -2.6 486,406 - DZA65_RS02235 0.62 +0.4 486,435 + DZA65_RS02235 0.70 -0.7 486,435 + DZA65_RS02235 0.70 -0.2 486,435 + DZA65_RS02235 0.70 -0.6 486,435 + DZA65_RS02235 0.70 -2.1 486,436 - DZA65_RS02235 0.70 -0.5 486,511 + DZA65_RS02235 0.90 -0.5 486,511 + DZA65_RS02235 0.90 +1.3 486,512 - -0.4 486,512 - +0.9 486,512 - -0.1 486,514 - -0.5 486,514 - -1.4 486,598 - -0.5 486,598 - +0.8 486,600 + +1.6 486,601 - +0.9 486,707 + DZA65_RS02240 0.10 +0.9 486,714 + DZA65_RS02240 0.11 +2.1 486,715 - DZA65_RS02240 0.11 +1.6 486,757 + DZA65_RS02240 0.17 -1.6 486,757 + DZA65_RS02240 0.17 +0.1 486,758 - DZA65_RS02240 0.17 +1.1 486,758 - DZA65_RS02240 0.17 -1.9 486,782 + DZA65_RS02240 0.20 -0.4 486,782 + DZA65_RS02240 0.20 +2.0 486,782 + DZA65_RS02240 0.20 -0.4 486,783 - DZA65_RS02240 0.20 -1.9 486,783 - DZA65_RS02240 0.20 +0.2 486,783 - DZA65_RS02240 0.20 -2.6 487,009 - DZA65_RS02240 0.48 -1.1 487,062 + DZA65_RS02240 0.55 -0.6 487,062 + DZA65_RS02240 0.55 +0.9 487,062 + DZA65_RS02240 0.55 +1.6 487,063 - DZA65_RS02240 0.55 -0.0 487,235 + DZA65_RS02240 0.77 +3.4 487,236 - DZA65_RS02240 0.77 -0.5 487,239 - DZA65_RS02240 0.78 +1.1 487,251 - DZA65_RS02240 0.79 +0.7 487,251 - DZA65_RS02240 0.79 -0.8 487,251 - DZA65_RS02240 0.79 +2.3 487,251 - DZA65_RS02240 0.79 +0.2 487,386 + -0.4 487,633 + -0.4 487,634 - +3.0 487,634 - +0.1 487,657 - +0.6 487,757 - -0.6 487,768 + -0.1 487,768 + -0.2 487,768 + +0.5 487,769 - +1.4 487,769 - -0.1 487,769 - +1.1 487,806 + -0.6 487,807 - -1.6 487,807 - -1.3 487,807 - -1.5 487,807 - +0.8 487,875 - DZA65_RS02245 0.14 -1.6 487,875 - DZA65_RS02245 0.14 -0.6 487,875 - DZA65_RS02245 0.14 -0.2 487,875 - DZA65_RS02245 0.14 -2.1 488,117 - DZA65_RS02245 0.44 +0.4 488,117 - DZA65_RS02245 0.44 -0.6
Or see this region's nucleotide sequence