Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS01415

Experiment: Atlantic

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDZA65_RS01410 and DZA65_RS01415 are separated by 103 nucleotidesDZA65_RS01415 and DZA65_RS01420 overlap by 4 nucleotidesDZA65_RS01420 and DZA65_RS01425 are separated by 24 nucleotides DZA65_RS01410: DZA65_RS01410 - rod shape-determining protein MreB, at 310,562 to 311,605 _RS01410 DZA65_RS01415: DZA65_RS01415 - rod shape-determining protein MreC, at 311,709 to 312,827 _RS01415 DZA65_RS01420: DZA65_RS01420 - rod shape-determining protein MreD, at 312,824 to 313,312 _RS01420 DZA65_RS01425: DZA65_RS01425 - septum formation inhibitor Maf, at 313,337 to 313,930 _RS01425 Position (kb) 311 312 313Strain fitness (log2 ratio) -2 -1 0 1 2at 311.603 kb on + strandat 311.603 kb on + strandat 311.604 kb on - strandat 311.604 kb on - strandat 311.656 kb on + strandat 311.656 kb on + strandat 311.656 kb on + strandat 311.656 kb on + strandat 311.656 kb on + strandat 311.656 kb on + strandat 311.657 kb on - strandat 311.657 kb on - strandat 311.657 kb on - strandat 311.673 kb on - strandat 311.685 kb on + strandat 311.698 kb on + strandat 311.708 kb on + strandat 312.668 kb on + strand, within DZA65_RS01415at 312.743 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.829 kb on + strandat 312.833 kb on + strandat 313.310 kb on + strandat 313.310 kb on + strandat 313.310 kb on + strandat 313.310 kb on + strandat 313.311 kb on - strandat 313.311 kb on - strandat 313.313 kb on + strandat 313.314 kb on - strandat 313.314 kb on - strandat 313.324 kb on + strandat 313.325 kb on - strandat 313.349 kb on + strandat 313.349 kb on + strandat 313.350 kb on - strandat 313.350 kb on - strandat 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.466 kb on + strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.467 kb on - strand, within DZA65_RS01425at 313.707 kb on + strand, within DZA65_RS01425at 313.708 kb on - strand, within DZA65_RS01425at 313.708 kb on - strand, within DZA65_RS01425at 313.738 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.745 kb on + strand, within DZA65_RS01425at 313.746 kb on - strandat 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.746 kb on - strand, within DZA65_RS01425at 313.784 kb on + strand, within DZA65_RS01425

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Per-strain Table

Position Strand Gene LocusTag Fraction Atlantic
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311,603 + -0.5
311,603 + +1.6
311,604 - -1.5
311,604 - -2.0
311,656 + -1.1
311,656 + -0.6
311,656 + -0.7
311,656 + +0.0
311,656 + +0.5
311,656 + -1.8
311,657 - +0.9
311,657 - +0.1
311,657 - -0.7
311,673 - -0.1
311,685 + +0.0
311,698 + -2.4
311,708 + -0.5
312,668 + DZA65_RS01415 0.86 +0.5
312,743 + -1.5
312,829 + -0.3
312,829 + -1.0
312,829 + -0.5
312,829 + -0.7
312,829 + +0.3
312,829 + -1.8
312,829 + +1.0
312,833 + -0.2
313,310 + +0.0
313,310 + -1.3
313,310 + -1.0
313,310 + +1.5
313,311 - +0.6
313,311 - +0.0
313,313 + -2.3
313,314 - +0.7
313,314 - -0.5
313,324 + -0.3
313,325 - +0.0
313,349 + +0.6
313,349 + -0.3
313,350 - -0.2
313,350 - -1.0
313,466 + DZA65_RS01425 0.22 -0.5
313,466 + DZA65_RS01425 0.22 +1.2
313,466 + DZA65_RS01425 0.22 -1.5
313,466 + DZA65_RS01425 0.22 +0.4
313,466 + DZA65_RS01425 0.22 -0.5
313,466 + DZA65_RS01425 0.22 -1.2
313,467 - DZA65_RS01425 0.22 -0.2
313,467 - DZA65_RS01425 0.22 +0.6
313,467 - DZA65_RS01425 0.22 +1.2
313,467 - DZA65_RS01425 0.22 +0.6
313,467 - DZA65_RS01425 0.22 +1.8
313,467 - DZA65_RS01425 0.22 -1.6
313,707 + DZA65_RS01425 0.62 -0.5
313,708 - DZA65_RS01425 0.62 +0.5
313,708 - DZA65_RS01425 0.62 -0.1
313,738 + DZA65_RS01425 0.68 +0.4
313,745 + DZA65_RS01425 0.69 -1.5
313,745 + DZA65_RS01425 0.69 -0.1
313,745 + DZA65_RS01425 0.69 +0.5
313,745 + DZA65_RS01425 0.69 -0.1
313,745 + DZA65_RS01425 0.69 -2.4
313,745 + DZA65_RS01425 0.69 -0.4
313,745 + DZA65_RS01425 0.69 +0.6
313,745 + DZA65_RS01425 0.69 +2.4
313,745 + DZA65_RS01425 0.69 +1.2
313,745 + DZA65_RS01425 0.69 +1.6
313,745 + DZA65_RS01425 0.69 -0.2
313,745 + DZA65_RS01425 0.69 -2.3
313,745 + DZA65_RS01425 0.69 -1.0
313,745 + DZA65_RS01425 0.69 -1.8
313,745 + DZA65_RS01425 0.69 +1.0
313,745 + DZA65_RS01425 0.69 +0.1
313,746 - -1.5
313,746 - DZA65_RS01425 0.69 -1.3
313,746 - DZA65_RS01425 0.69 -2.3
313,746 - DZA65_RS01425 0.69 -1.4
313,746 - DZA65_RS01425 0.69 +0.3
313,746 - DZA65_RS01425 0.69 -1.4
313,746 - DZA65_RS01425 0.69 -0.5
313,746 - DZA65_RS01425 0.69 +0.3
313,746 - DZA65_RS01425 0.69 -0.4
313,746 - DZA65_RS01425 0.69 -2.0
313,746 - DZA65_RS01425 0.69 -1.0
313,746 - DZA65_RS01425 0.69 -0.5
313,746 - DZA65_RS01425 0.69 +0.3
313,746 - DZA65_RS01425 0.69 +0.6
313,784 + DZA65_RS01425 0.75 +1.6

Or see this region's nucleotide sequence