Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS01275 and DZA65_RS01280 are separated by 102 nucleotides DZA65_RS01280 and DZA65_RS01285 are separated by 280 nucleotides DZA65_RS01285 and DZA65_RS01290 are separated by 8 nucleotides
DZA65_RS01275: DZA65_RS01275 - 23S ribosomal RNA, at 283,967 to 286,990
_RS01275
DZA65_RS01280: DZA65_RS01280 - 5S ribosomal RNA, at 287,093 to 287,208
_RS01280
DZA65_RS01285: DZA65_RS01285 - amino acid ABC transporter ATP-binding protein, at 287,489 to 288,250
_RS01285
DZA65_RS01290: DZA65_RS01290 - amino acid ABC transporter permease, at 288,259 to 289,347
_RS01290
Position (kb) 287
288
289 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 287.323 kb on - strand at 287.458 kb on - strand at 287.458 kb on - strand at 287.458 kb on - strand at 287.491 kb on - strand at 287.499 kb on - strand at 287.499 kb on - strand at 287.521 kb on + strand at 287.521 kb on + strand at 287.521 kb on + strand at 287.522 kb on - strand at 287.522 kb on - strand at 287.522 kb on - strand at 287.591 kb on - strand, within DZA65_RS01285 at 287.591 kb on - strand, within DZA65_RS01285 at 287.591 kb on - strand, within DZA65_RS01285 at 287.614 kb on + strand, within DZA65_RS01285 at 287.821 kb on + strand, within DZA65_RS01285 at 287.822 kb on - strand, within DZA65_RS01285 at 287.822 kb on - strand, within DZA65_RS01285 at 287.822 kb on - strand, within DZA65_RS01285 at 287.822 kb on - strand, within DZA65_RS01285 at 287.856 kb on + strand, within DZA65_RS01285 at 287.856 kb on + strand, within DZA65_RS01285 at 287.856 kb on + strand, within DZA65_RS01285 at 287.857 kb on - strand, within DZA65_RS01285 at 287.857 kb on - strand, within DZA65_RS01285 at 287.920 kb on + strand, within DZA65_RS01285 at 287.920 kb on + strand, within DZA65_RS01285 at 287.921 kb on - strand, within DZA65_RS01285 at 287.921 kb on - strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.043 kb on + strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.044 kb on - strand, within DZA65_RS01285 at 288.076 kb on + strand, within DZA65_RS01285 at 288.076 kb on + strand, within DZA65_RS01285 at 288.076 kb on + strand, within DZA65_RS01285 at 288.077 kb on - strand, within DZA65_RS01285 at 288.077 kb on - strand, within DZA65_RS01285 at 288.077 kb on - strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.127 kb on + strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.128 kb on - strand, within DZA65_RS01285 at 288.154 kb on + strand, within DZA65_RS01285 at 288.155 kb on - strand, within DZA65_RS01285 at 288.158 kb on - strand, within DZA65_RS01285 at 288.167 kb on + strand, within DZA65_RS01285 at 288.168 kb on - strand, within DZA65_RS01285 at 288.190 kb on + strand at 288.191 kb on - strand at 288.217 kb on - strand at 288.217 kb on - strand at 288.217 kb on - strand at 288.217 kb on - strand at 288.234 kb on - strand at 288.295 kb on + strand at 288.306 kb on + strand at 288.306 kb on + strand at 288.306 kb on + strand at 288.306 kb on + strand at 288.307 kb on - strand at 288.308 kb on + strand at 288.339 kb on - strand at 288.339 kb on - strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.355 kb on + strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.356 kb on - strand at 288.359 kb on + strand at 288.359 kb on + strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.360 kb on - strand at 288.380 kb on - strand, within DZA65_RS01290 at 288.380 kb on - strand, within DZA65_RS01290 at 288.540 kb on + strand, within DZA65_RS01290 at 288.541 kb on - strand, within DZA65_RS01290 at 288.541 kb on - strand, within DZA65_RS01290 at 288.578 kb on + strand, within DZA65_RS01290 at 288.578 kb on + strand, within DZA65_RS01290 at 288.578 kb on + strand, within DZA65_RS01290 at 288.578 kb on + strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.579 kb on - strand, within DZA65_RS01290 at 288.629 kb on + strand, within DZA65_RS01290 at 288.629 kb on + strand, within DZA65_RS01290 at 288.630 kb on - strand, within DZA65_RS01290 at 288.630 kb on - strand, within DZA65_RS01290 at 288.630 kb on - strand, within DZA65_RS01290 at 288.687 kb on + strand, within DZA65_RS01290 at 288.688 kb on - strand, within DZA65_RS01290 at 288.733 kb on + strand, within DZA65_RS01290 at 288.733 kb on + strand, within DZA65_RS01290 at 288.733 kb on + strand, within DZA65_RS01290 at 288.774 kb on + strand, within DZA65_RS01290 at 288.873 kb on + strand, within DZA65_RS01290 at 288.873 kb on + strand, within DZA65_RS01290 at 288.874 kb on - strand, within DZA65_RS01290 at 288.874 kb on - strand, within DZA65_RS01290 at 288.874 kb on - strand, within DZA65_RS01290 at 288.874 kb on - strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.876 kb on + strand, within DZA65_RS01290 at 288.877 kb on - strand, within DZA65_RS01290 at 288.877 kb on - strand at 288.911 kb on - strand, within DZA65_RS01290 at 288.911 kb on - strand, within DZA65_RS01290 at 288.911 kb on - strand, within DZA65_RS01290 at 288.970 kb on + strand, within DZA65_RS01290 at 288.970 kb on + strand, within DZA65_RS01290 at 288.970 kb on + strand, within DZA65_RS01290 at 288.971 kb on - strand, within DZA65_RS01290 at 288.971 kb on - strand, within DZA65_RS01290 at 288.971 kb on - strand, within DZA65_RS01290 at 288.971 kb on - strand, within DZA65_RS01290 at 288.989 kb on + strand, within DZA65_RS01290 at 288.989 kb on + strand, within DZA65_RS01290 at 288.989 kb on + strand, within DZA65_RS01290 at 288.990 kb on - strand, within DZA65_RS01290 at 288.990 kb on - strand, within DZA65_RS01290 at 289.027 kb on + strand, within DZA65_RS01290 at 289.048 kb on + strand, within DZA65_RS01290 at 289.049 kb on - strand, within DZA65_RS01290 at 289.065 kb on + strand, within DZA65_RS01290 at 289.098 kb on - strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.101 kb on + strand, within DZA65_RS01290 at 289.102 kb on - strand, within DZA65_RS01290 at 289.102 kb on - strand, within DZA65_RS01290 at 289.102 kb on - strand, within DZA65_RS01290 at 289.102 kb on - strand, within DZA65_RS01290
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 287,323 - -0.9 287,458 - -1.5 287,458 - +0.1 287,458 - +0.8 287,491 - +0.3 287,499 - +0.3 287,499 - -1.7 287,521 + -0.6 287,521 + +0.4 287,521 + -1.1 287,522 - -0.3 287,522 - +0.0 287,522 - +0.5 287,591 - DZA65_RS01285 0.13 +0.1 287,591 - DZA65_RS01285 0.13 +1.6 287,591 - DZA65_RS01285 0.13 -1.3 287,614 + DZA65_RS01285 0.16 +0.3 287,821 + DZA65_RS01285 0.44 -0.4 287,822 - DZA65_RS01285 0.44 -1.7 287,822 - DZA65_RS01285 0.44 -0.4 287,822 - DZA65_RS01285 0.44 -1.3 287,822 - DZA65_RS01285 0.44 -1.4 287,856 + DZA65_RS01285 0.48 -2.1 287,856 + DZA65_RS01285 0.48 +1.4 287,856 + DZA65_RS01285 0.48 -1.1 287,857 - DZA65_RS01285 0.48 -3.5 287,857 - DZA65_RS01285 0.48 -0.4 287,920 + DZA65_RS01285 0.57 -1.0 287,920 + DZA65_RS01285 0.57 -0.7 287,921 - DZA65_RS01285 0.57 -0.3 287,921 - DZA65_RS01285 0.57 -1.3 288,043 + DZA65_RS01285 0.73 +0.7 288,043 + DZA65_RS01285 0.73 +0.2 288,043 + DZA65_RS01285 0.73 +0.9 288,043 + DZA65_RS01285 0.73 -0.9 288,043 + DZA65_RS01285 0.73 -2.4 288,043 + DZA65_RS01285 0.73 -1.7 288,043 + DZA65_RS01285 0.73 -0.8 288,043 + DZA65_RS01285 0.73 -0.2 288,043 + DZA65_RS01285 0.73 +0.2 288,044 - DZA65_RS01285 0.73 +0.3 288,044 - DZA65_RS01285 0.73 -0.3 288,044 - DZA65_RS01285 0.73 +1.6 288,044 - DZA65_RS01285 0.73 +0.7 288,044 - DZA65_RS01285 0.73 -1.7 288,044 - DZA65_RS01285 0.73 -0.5 288,044 - DZA65_RS01285 0.73 +0.7 288,044 - DZA65_RS01285 0.73 -1.4 288,044 - DZA65_RS01285 0.73 -0.2 288,044 - DZA65_RS01285 0.73 +0.1 288,044 - DZA65_RS01285 0.73 -0.0 288,044 - DZA65_RS01285 0.73 +0.2 288,044 - DZA65_RS01285 0.73 -0.4 288,076 + DZA65_RS01285 0.77 -0.3 288,076 + DZA65_RS01285 0.77 +0.1 288,076 + DZA65_RS01285 0.77 -0.2 288,077 - DZA65_RS01285 0.77 +0.2 288,077 - DZA65_RS01285 0.77 -0.3 288,077 - DZA65_RS01285 0.77 -0.8 288,127 + DZA65_RS01285 0.84 +0.5 288,127 + DZA65_RS01285 0.84 +0.0 288,127 + DZA65_RS01285 0.84 +0.2 288,127 + DZA65_RS01285 0.84 +0.3 288,127 + DZA65_RS01285 0.84 +0.7 288,127 + DZA65_RS01285 0.84 -1.4 288,127 + DZA65_RS01285 0.84 +0.4 288,127 + DZA65_RS01285 0.84 +0.1 288,127 + DZA65_RS01285 0.84 -0.9 288,127 + DZA65_RS01285 0.84 +0.7 288,128 - DZA65_RS01285 0.84 -2.1 288,128 - DZA65_RS01285 0.84 -0.5 288,128 - DZA65_RS01285 0.84 -2.7 288,128 - DZA65_RS01285 0.84 -0.5 288,128 - DZA65_RS01285 0.84 -0.1 288,128 - DZA65_RS01285 0.84 -0.7 288,128 - DZA65_RS01285 0.84 -1.7 288,128 - DZA65_RS01285 0.84 +0.6 288,128 - DZA65_RS01285 0.84 +2.1 288,128 - DZA65_RS01285 0.84 -0.2 288,128 - DZA65_RS01285 0.84 -0.8 288,154 + DZA65_RS01285 0.87 -0.1 288,155 - DZA65_RS01285 0.87 -0.1 288,158 - DZA65_RS01285 0.88 +0.1 288,167 + DZA65_RS01285 0.89 +0.3 288,168 - DZA65_RS01285 0.89 -0.2 288,190 + +0.6 288,191 - -0.7 288,217 - -0.9 288,217 - +1.2 288,217 - +1.2 288,217 - -0.5 288,234 - +0.7 288,295 + -2.1 288,306 + +0.5 288,306 + +1.6 288,306 + +2.6 288,306 + -1.5 288,307 - -0.2 288,308 + +0.1 288,339 - +1.3 288,339 - -0.4 288,355 + +0.3 288,355 + +1.4 288,355 + +2.1 288,355 + -0.7 288,355 + -2.3 288,355 + -1.4 288,355 + +0.1 288,355 + -0.2 288,355 + -0.4 288,355 + -1.8 288,355 + +1.5 288,356 - +0.6 288,356 - +0.6 288,356 - -1.6 288,356 - -1.4 288,356 - -1.0 288,356 - -0.5 288,356 - +2.8 288,356 - +0.1 288,356 - -0.3 288,356 - -1.5 288,356 - +1.4 288,359 + +2.8 288,359 + -1.5 288,360 - -0.2 288,360 - +1.4 288,360 - +0.9 288,360 - +0.5 288,360 - -1.1 288,360 - -1.7 288,380 - DZA65_RS01290 0.11 +0.4 288,380 - DZA65_RS01290 0.11 -0.3 288,540 + DZA65_RS01290 0.26 -0.3 288,541 - DZA65_RS01290 0.26 -1.3 288,541 - DZA65_RS01290 0.26 -0.5 288,578 + DZA65_RS01290 0.29 +1.6 288,578 + DZA65_RS01290 0.29 +0.5 288,578 + DZA65_RS01290 0.29 +1.3 288,578 + DZA65_RS01290 0.29 +1.5 288,579 - DZA65_RS01290 0.29 +0.1 288,579 - DZA65_RS01290 0.29 -0.0 288,579 - DZA65_RS01290 0.29 -0.7 288,579 - DZA65_RS01290 0.29 -0.1 288,579 - DZA65_RS01290 0.29 +0.2 288,579 - DZA65_RS01290 0.29 +0.0 288,579 - DZA65_RS01290 0.29 -0.1 288,579 - DZA65_RS01290 0.29 -0.4 288,629 + DZA65_RS01290 0.34 +0.5 288,629 + DZA65_RS01290 0.34 +1.3 288,630 - DZA65_RS01290 0.34 +0.6 288,630 - DZA65_RS01290 0.34 +0.2 288,630 - DZA65_RS01290 0.34 +1.0 288,687 + DZA65_RS01290 0.39 -0.0 288,688 - DZA65_RS01290 0.39 -0.0 288,733 + DZA65_RS01290 0.44 +0.3 288,733 + DZA65_RS01290 0.44 +0.1 288,733 + DZA65_RS01290 0.44 +1.7 288,774 + DZA65_RS01290 0.47 +0.6 288,873 + DZA65_RS01290 0.56 +0.6 288,873 + DZA65_RS01290 0.56 +1.1 288,874 - DZA65_RS01290 0.56 +1.1 288,874 - DZA65_RS01290 0.56 +1.4 288,874 - DZA65_RS01290 0.56 +1.0 288,874 - DZA65_RS01290 0.56 +1.1 288,876 + DZA65_RS01290 0.57 -1.3 288,876 + DZA65_RS01290 0.57 -1.7 288,876 + DZA65_RS01290 0.57 +0.1 288,876 + DZA65_RS01290 0.57 -1.4 288,876 + DZA65_RS01290 0.57 +1.1 288,876 + DZA65_RS01290 0.57 -1.3 288,877 - DZA65_RS01290 0.57 +0.9 288,877 - +2.1 288,911 - DZA65_RS01290 0.60 -0.0 288,911 - DZA65_RS01290 0.60 -0.1 288,911 - DZA65_RS01290 0.60 +0.1 288,970 + DZA65_RS01290 0.65 -0.9 288,970 + DZA65_RS01290 0.65 -1.5 288,970 + DZA65_RS01290 0.65 -1.5 288,971 - DZA65_RS01290 0.65 -0.2 288,971 - DZA65_RS01290 0.65 -3.6 288,971 - DZA65_RS01290 0.65 -2.3 288,971 - DZA65_RS01290 0.65 +0.5 288,989 + DZA65_RS01290 0.67 -1.5 288,989 + DZA65_RS01290 0.67 -3.6 288,989 + DZA65_RS01290 0.67 -2.1 288,990 - DZA65_RS01290 0.67 -1.4 288,990 - DZA65_RS01290 0.67 -1.1 289,027 + DZA65_RS01290 0.71 -1.7 289,048 + DZA65_RS01290 0.72 -0.2 289,049 - DZA65_RS01290 0.73 +3.1 289,065 + DZA65_RS01290 0.74 -1.7 289,098 - DZA65_RS01290 0.77 +1.4 289,101 + DZA65_RS01290 0.77 -0.9 289,101 + DZA65_RS01290 0.77 +0.9 289,101 + DZA65_RS01290 0.77 +0.8 289,101 + DZA65_RS01290 0.77 +0.2 289,101 + DZA65_RS01290 0.77 +1.2 289,101 + DZA65_RS01290 0.77 -0.5 289,101 + DZA65_RS01290 0.77 +1.3 289,102 - DZA65_RS01290 0.77 -3.2 289,102 - DZA65_RS01290 0.77 +0.2 289,102 - DZA65_RS01290 0.77 +0.3 289,102 - DZA65_RS01290 0.77 -0.5
Or see this region's nucleotide sequence