Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS00880 and DZA65_RS00885 are separated by 289 nucleotides DZA65_RS00885 and DZA65_RS00890 are separated by 260 nucleotides
DZA65_RS00880: DZA65_RS00880 - dienelactone hydrolase family protein, at 197,142 to 197,969
_RS00880
DZA65_RS00885: DZA65_RS00885 - uridine phosphorylase, at 198,259 to 199,020
_RS00885
DZA65_RS00890: DZA65_RS00890 - tyrosine-protein phosphatase, at 199,281 to 200,063
_RS00890
Position (kb) 198
199
200 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3
4
5
6 at 197.482 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.589 kb on + strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.590 kb on - strand, within DZA65_RS00880 at 197.647 kb on + strand, within DZA65_RS00880 at 197.648 kb on - strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.674 kb on + strand, within DZA65_RS00880 at 197.675 kb on - strand, within DZA65_RS00880 at 197.691 kb on - strand, within DZA65_RS00880 at 197.698 kb on + strand, within DZA65_RS00880 at 197.699 kb on - strand, within DZA65_RS00880 at 197.708 kb on + strand, within DZA65_RS00880 at 197.745 kb on + strand, within DZA65_RS00880 at 197.745 kb on + strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.746 kb on - strand, within DZA65_RS00880 at 197.763 kb on + strand, within DZA65_RS00880 at 197.763 kb on + strand, within DZA65_RS00880 at 197.764 kb on - strand, within DZA65_RS00880 at 197.814 kb on - strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.815 kb on + strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.816 kb on - strand, within DZA65_RS00880 at 197.953 kb on - strand at 197.982 kb on - strand at 197.982 kb on - strand at 198.046 kb on + strand at 198.046 kb on + strand at 198.046 kb on + strand at 198.047 kb on - strand at 198.051 kb on + strand at 198.052 kb on - strand at 198.052 kb on - strand at 198.106 kb on + strand at 198.117 kb on + strand at 198.118 kb on - strand at 198.154 kb on + strand at 198.158 kb on + strand at 198.158 kb on + strand at 198.169 kb on + strand at 198.218 kb on + strand at 198.218 kb on + strand at 198.218 kb on + strand at 198.219 kb on - strand at 198.231 kb on + strand at 198.231 kb on + strand at 198.232 kb on - strand at 198.232 kb on - strand at 198.232 kb on - strand at 198.258 kb on + strand at 198.259 kb on - strand at 198.269 kb on + strand at 198.269 kb on + strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.270 kb on - strand at 198.439 kb on - strand, within DZA65_RS00885 at 198.471 kb on + strand, within DZA65_RS00885 at 198.472 kb on - strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.485 kb on + strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.514 kb on - strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.660 kb on + strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.661 kb on - strand, within DZA65_RS00885 at 198.732 kb on + strand, within DZA65_RS00885 at 198.758 kb on - strand, within DZA65_RS00885 at 198.758 kb on - strand at 198.766 kb on + strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.767 kb on - strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.801 kb on + strand, within DZA65_RS00885 at 198.802 kb on - strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.835 kb on + strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.836 kb on - strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.921 kb on + strand, within DZA65_RS00885 at 198.943 kb on - strand, within DZA65_RS00885 at 198.948 kb on + strand at 198.948 kb on + strand at 198.949 kb on - strand at 199.008 kb on - strand at 199.087 kb on + strand at 199.087 kb on + strand at 199.088 kb on - strand at 199.088 kb on - strand at 199.137 kb on + strand at 199.138 kb on - strand at 199.138 kb on - strand at 199.138 kb on - strand at 199.143 kb on + strand at 199.143 kb on + strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.144 kb on - strand at 199.164 kb on + strand at 199.165 kb on - strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.167 kb on + strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.168 kb on - strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.199 kb on + strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.200 kb on - strand at 199.218 kb on + strand at 199.219 kb on - strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.222 kb on + strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.223 kb on - strand at 199.237 kb on - strand at 199.251 kb on - strand at 199.251 kb on - strand at 199.251 kb on - strand at 199.264 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.268 kb on + strand at 199.269 kb on + strand at 199.269 kb on - strand at 199.269 kb on - strand at 199.280 kb on + strand at 199.280 kb on + strand at 199.281 kb on - strand at 199.298 kb on - strand at 199.298 kb on - strand at 199.349 kb on - strand at 199.349 kb on - strand at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.423 kb on + strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.424 kb on - strand, within DZA65_RS00890 at 199.454 kb on + strand, within DZA65_RS00890 at 199.454 kb on + strand, within DZA65_RS00890 at 199.537 kb on - strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.634 kb on + strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.635 kb on - strand, within DZA65_RS00890 at 199.657 kb on + strand, within DZA65_RS00890 at 199.677 kb on + strand, within DZA65_RS00890 at 199.754 kb on + strand, within DZA65_RS00890 at 199.821 kb on + strand, within DZA65_RS00890 at 199.822 kb on - strand, within DZA65_RS00890 at 199.822 kb on - strand, within DZA65_RS00890 at 199.992 kb on - strand at 200.010 kb on + strand at 200.011 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 197,482 + DZA65_RS00880 0.41 -0.3 197,589 + DZA65_RS00880 0.54 -0.5 197,589 + DZA65_RS00880 0.54 -0.2 197,589 + DZA65_RS00880 0.54 +0.3 197,589 + DZA65_RS00880 0.54 -0.6 197,590 - DZA65_RS00880 0.54 +1.1 197,590 - DZA65_RS00880 0.54 +0.1 197,590 - DZA65_RS00880 0.54 +0.4 197,590 - DZA65_RS00880 0.54 -2.1 197,647 + DZA65_RS00880 0.61 -0.4 197,648 - DZA65_RS00880 0.61 +2.7 197,674 + DZA65_RS00880 0.64 +1.4 197,674 + DZA65_RS00880 0.64 +0.5 197,674 + DZA65_RS00880 0.64 -0.5 197,674 + DZA65_RS00880 0.64 -0.7 197,674 + DZA65_RS00880 0.64 +1.8 197,675 - DZA65_RS00880 0.64 +0.1 197,691 - DZA65_RS00880 0.66 -1.2 197,698 + DZA65_RS00880 0.67 +0.3 197,699 - DZA65_RS00880 0.67 +0.6 197,708 + DZA65_RS00880 0.68 +0.4 197,745 + DZA65_RS00880 0.73 -0.8 197,745 + DZA65_RS00880 0.73 +0.1 197,746 - DZA65_RS00880 0.73 -1.3 197,746 - DZA65_RS00880 0.73 -0.6 197,746 - DZA65_RS00880 0.73 +1.5 197,746 - DZA65_RS00880 0.73 +0.7 197,746 - DZA65_RS00880 0.73 +1.4 197,746 - DZA65_RS00880 0.73 +0.7 197,746 - DZA65_RS00880 0.73 +0.7 197,763 + DZA65_RS00880 0.75 +0.1 197,763 + DZA65_RS00880 0.75 -1.0 197,764 - DZA65_RS00880 0.75 -0.7 197,814 - DZA65_RS00880 0.81 +0.3 197,815 + DZA65_RS00880 0.81 +1.3 197,815 + DZA65_RS00880 0.81 -0.9 197,815 + DZA65_RS00880 0.81 +1.5 197,815 + DZA65_RS00880 0.81 +0.7 197,815 + DZA65_RS00880 0.81 -0.7 197,815 + DZA65_RS00880 0.81 -0.4 197,815 + DZA65_RS00880 0.81 -1.3 197,815 + DZA65_RS00880 0.81 +0.5 197,816 - DZA65_RS00880 0.81 -0.1 197,816 - DZA65_RS00880 0.81 -0.3 197,816 - DZA65_RS00880 0.81 +0.5 197,816 - DZA65_RS00880 0.81 -0.1 197,816 - DZA65_RS00880 0.81 -1.3 197,816 - DZA65_RS00880 0.81 -0.9 197,816 - DZA65_RS00880 0.81 -2.8 197,816 - DZA65_RS00880 0.81 +1.4 197,816 - DZA65_RS00880 0.81 +0.4 197,953 - -0.9 197,982 - -1.1 197,982 - +0.5 198,046 + -0.3 198,046 + -0.5 198,046 + -0.3 198,047 - -1.7 198,051 + -0.3 198,052 - +0.3 198,052 - +0.7 198,106 + +4.4 198,117 + -0.0 198,118 - -0.3 198,154 + +0.6 198,158 + +0.6 198,158 + +0.1 198,169 + -0.8 198,218 + +0.1 198,218 + -0.3 198,218 + +1.8 198,219 - +1.1 198,231 + -0.1 198,231 + +1.7 198,232 - -1.5 198,232 - -1.6 198,232 - -1.2 198,258 + -1.6 198,259 - -0.5 198,269 + +0.7 198,269 + +1.1 198,270 - +1.8 198,270 - +1.3 198,270 - -1.1 198,270 - -0.2 198,270 - -0.9 198,270 - +0.4 198,439 - DZA65_RS00885 0.24 +1.3 198,471 + DZA65_RS00885 0.28 -0.5 198,472 - DZA65_RS00885 0.28 -1.8 198,485 + DZA65_RS00885 0.30 -2.4 198,485 + DZA65_RS00885 0.30 -1.5 198,514 - DZA65_RS00885 0.33 -0.9 198,514 - DZA65_RS00885 0.33 -1.3 198,514 - DZA65_RS00885 0.33 +2.4 198,660 + DZA65_RS00885 0.53 -1.3 198,660 + DZA65_RS00885 0.53 +1.1 198,661 - DZA65_RS00885 0.53 -2.5 198,661 - DZA65_RS00885 0.53 +5.8 198,732 + DZA65_RS00885 0.62 -2.4 198,758 - DZA65_RS00885 0.65 -0.0 198,758 - +0.1 198,766 + DZA65_RS00885 0.67 -1.4 198,767 - DZA65_RS00885 0.67 +0.7 198,767 - DZA65_RS00885 0.67 -0.9 198,801 + DZA65_RS00885 0.71 +0.9 198,801 + DZA65_RS00885 0.71 +2.1 198,802 - DZA65_RS00885 0.71 +0.4 198,835 + DZA65_RS00885 0.76 -0.2 198,835 + DZA65_RS00885 0.76 -0.0 198,835 + DZA65_RS00885 0.76 +1.1 198,836 - DZA65_RS00885 0.76 -0.3 198,836 - DZA65_RS00885 0.76 +0.5 198,836 - DZA65_RS00885 0.76 +0.3 198,921 + DZA65_RS00885 0.87 -0.7 198,921 + DZA65_RS00885 0.87 -0.3 198,943 - DZA65_RS00885 0.90 -1.4 198,948 + +0.5 198,948 + +0.7 198,949 - -0.9 199,008 - +0.4 199,087 + -2.7 199,087 + -0.7 199,088 - +0.1 199,088 - +0.1 199,137 + -1.3 199,138 - -1.3 199,138 - +0.6 199,138 - -0.2 199,143 + -1.3 199,143 + +1.1 199,144 - +0.8 199,144 - +0.4 199,144 - +0.9 199,144 - +1.1 199,144 - +0.3 199,164 + -0.7 199,165 - +2.7 199,167 + -1.3 199,167 + +3.0 199,167 + +0.2 199,167 + +0.9 199,167 + -1.4 199,168 - +1.7 199,168 - +0.4 199,168 - +1.1 199,168 - -2.3 199,168 - +0.7 199,168 - -0.5 199,168 - -1.5 199,168 - -1.1 199,168 - -0.3 199,199 + +1.9 199,199 + -1.5 199,199 + -1.5 199,199 + +0.3 199,200 - -1.3 199,200 - +1.1 199,200 - -1.2 199,200 - -1.5 199,218 + -3.1 199,219 - +0.9 199,222 + -0.2 199,222 + -0.9 199,222 + -2.5 199,222 + +1.6 199,222 + -2.1 199,222 + +1.7 199,222 + +1.1 199,222 + +0.8 199,223 - +1.6 199,223 - -0.3 199,223 - +0.6 199,223 - +0.9 199,223 - +0.1 199,223 - +1.7 199,223 - +0.7 199,223 - +0.0 199,223 - +0.3 199,223 - +0.1 199,223 - -1.1 199,237 - -1.3 199,251 - +0.1 199,251 - -0.2 199,251 - +0.1 199,264 + +1.1 199,268 + +0.3 199,268 + -0.7 199,268 + -1.7 199,268 + -1.3 199,269 + +0.5 199,269 - +1.5 199,269 - -0.8 199,280 + -0.9 199,280 + -0.7 199,281 - +0.5 199,298 - +1.5 199,298 - -1.7 199,349 - -0.4 199,349 - -0.8 199,423 + DZA65_RS00890 0.18 -0.5 199,423 + DZA65_RS00890 0.18 +0.1 199,423 + DZA65_RS00890 0.18 +0.6 199,423 + DZA65_RS00890 0.18 +0.2 199,423 + DZA65_RS00890 0.18 +0.4 199,423 + DZA65_RS00890 0.18 -1.5 199,424 - DZA65_RS00890 0.18 +1.6 199,424 - DZA65_RS00890 0.18 +0.7 199,424 - DZA65_RS00890 0.18 -1.3 199,424 - DZA65_RS00890 0.18 +0.9 199,454 + DZA65_RS00890 0.22 +0.3 199,454 + DZA65_RS00890 0.22 -0.7 199,537 - DZA65_RS00890 0.33 -0.6 199,634 + DZA65_RS00890 0.45 +3.5 199,634 + DZA65_RS00890 0.45 +1.1 199,634 + DZA65_RS00890 0.45 +0.4 199,634 + DZA65_RS00890 0.45 -2.4 199,635 - DZA65_RS00890 0.45 +1.1 199,635 - DZA65_RS00890 0.45 -1.5 199,635 - DZA65_RS00890 0.45 +0.4 199,635 - DZA65_RS00890 0.45 -0.2 199,635 - DZA65_RS00890 0.45 +0.9 199,657 + DZA65_RS00890 0.48 +1.0 199,677 + DZA65_RS00890 0.51 -0.9 199,754 + DZA65_RS00890 0.60 -0.5 199,821 + DZA65_RS00890 0.69 -0.3 199,822 - DZA65_RS00890 0.69 +1.7 199,822 - DZA65_RS00890 0.69 -0.9 199,992 - +1.0 200,010 + +0.1 200,011 - +0.2
Or see this region's nucleotide sequence