Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS00365

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
85,666	-				+0.8
85,682	+				+0.4
85,682	+				+0.1
85,682	+				+1.8
85,682	+				+0.1
85,683	-				-0.2
85,719	-				+0.1
85,766	-				+0.2
86,034	+		DZA65_RS00360	0.54	-1.5
86,034	+				+2.3
86,034	+		DZA65_RS00360	0.54	-2.0
86,056	+		DZA65_RS00360	0.58	-1.0
86,056	+		DZA65_RS00360	0.58	-0.2
86,056	+		DZA65_RS00360	0.58	-0.9
86,057	-		DZA65_RS00360	0.58	-1.5
86,116	+		DZA65_RS00360	0.70	-3.0
86,116	+		DZA65_RS00360	0.70	-0.2
86,116	+		DZA65_RS00360	0.70	-1.5
86,117	-		DZA65_RS00360	0.70	-0.5
86,117	-		DZA65_RS00360	0.70	-1.9
86,117	-		DZA65_RS00360	0.70	-1.4
86,127	+		DZA65_RS00360	0.72	-0.5
86,127	+		DZA65_RS00360	0.72	-1.1
86,127	+		DZA65_RS00360	0.72	-1.5
86,127	+		DZA65_RS00360	0.72	-2.2
86,127	+		DZA65_RS00360	0.72	-0.3
86,127	+		DZA65_RS00360	0.72	-1.7
86,127	+				+0.1
86,128	-		DZA65_RS00360	0.73	-1.5
86,128	-		DZA65_RS00360	0.73	-0.7
86,128	-		DZA65_RS00360	0.73	-0.6
86,128	-		DZA65_RS00360	0.73	-0.8
86,237	+				-0.7
86,238	-				-2.4
86,245	-				+0.1
86,283	+				+0.1
86,289	-				-2.2
86,307	-				-1.0
86,324	+				-0.4
86,344	+				-2.2
86,345	-				-1.2
86,349	+				-2.2
86,349	+				-1.4
86,350	-				-0.8
86,352	+				+2.5
86,353	-				-1.5
86,427	+				-0.1
86,462	+				-2.3
86,462	+				+0.7
86,462	+				+0.5
86,462	+				-2.2
86,462	+				-0.5
86,463	-				-1.5
86,463	-				-0.9
86,463	-				-1.6
86,463	-				-1.1
86,472	+				+1.5
86,472	+				+0.1
86,472	+				-0.4
86,472	+				-1.9
86,472	+				-2.4
86,473	-				-0.4
86,473	-				+1.1
86,473	-				-0.9
86,493	+				-2.1
86,493	+				-0.8
86,494	-				-1.2
86,494	-				+0.3
86,494	-				-0.2
86,494	-				-2.4
86,494	-				+0.0
86,494	-				-0.9
86,648	-				-1.8
86,670	+				-2.1
86,670	+				+1.1
86,670	+				+0.1
86,670	+				-1.7
86,670	+				-1.2
86,670	+				-0.9
86,670	+				-0.9
86,670	+				-1.8
86,670	+				-2.2
86,670	+				-0.5
86,671	-				-1.6
86,671	-				-0.9
86,671	-				-1.7
86,671	-				+1.1
86,671	-				-1.9
86,671	-				+0.2
86,671	-				-1.9
86,671	-				+0.1
86,671	-				-1.7
86,671	-				-1.2
86,671	-				-1.5
86,671	-				-1.2
86,671	-				-1.2
86,671	-				+1.4
86,671	-				-1.5
86,671	-				-2.4
86,674	+				-0.8
86,674	+				-1.5
86,674	+				+1.1
86,674	+				-2.1
86,674	+				-1.1
86,674	+				-2.9
86,674	+				-2.2
86,674	+				+1.5
86,674	+				-1.8
86,674	+				-0.2
86,674	+				+0.1
86,674	+				-2.9
86,674	+				-0.6
86,674	+				-0.9
86,674	+				-1.7
86,674	+				-1.5
86,674	+				+0.3
86,674	+				-1.1
86,674	+				-0.3
86,675	-				-1.2
86,675	-				+0.3
86,675	-				-0.3
86,675	-				-1.9
86,675	-				-1.3
86,675	-				-0.5
86,675	-				-0.5
86,675	-				-1.7
86,675	-				+0.8
86,675	-				+0.2
86,675	-				-1.4
86,675	-				-1.4
86,675	-				-1.5
86,675	-				-2.2
86,715	-		DZA65_RS00365	0.10	-0.6
86,715	-		DZA65_RS00365	0.10	-1.9
86,751	+		DZA65_RS00365	0.14	-1.5
86,751	+		DZA65_RS00365	0.14	-0.7
86,752	-		DZA65_RS00365	0.14	-1.5
86,752	-		DZA65_RS00365	0.14	-0.8
86,752	-		DZA65_RS00365	0.14	-2.0
86,752	-		DZA65_RS00365	0.14	-2.5
86,757	+		DZA65_RS00365	0.15	+0.1
86,757	+		DZA65_RS00365	0.15	-2.5
86,758	-		DZA65_RS00365	0.15	+0.5
86,758	-		DZA65_RS00365	0.15	-1.5
86,758	-		DZA65_RS00365	0.15	+0.2
86,807	+		DZA65_RS00365	0.21	-0.6
86,824	-		DZA65_RS00365	0.22	-0.5
86,995	-		DZA65_RS00365	0.42	-1.2
87,072	+		DZA65_RS00365	0.50	-1.2
87,072	+		DZA65_RS00365	0.50	+0.6
87,073	-		DZA65_RS00365	0.50	-0.2
87,073	-		DZA65_RS00365	0.50	-1.1
87,073	-		DZA65_RS00365	0.50	-3.1
87,244	+		DZA65_RS00365	0.69	-1.9
87,274	+		DZA65_RS00365	0.73	-0.9
87,274	+		DZA65_RS00365	0.73	-2.7
87,274	+		DZA65_RS00365	0.73	-1.4
87,275	-		DZA65_RS00365	0.73	-0.7
87,275	-		DZA65_RS00365	0.73	-0.7
87,275	-		DZA65_RS00365	0.73	-0.9
87,275	-		DZA65_RS00365	0.73	-4.3
87,303	+		DZA65_RS00365	0.76	-0.6
87,303	+		DZA65_RS00365	0.76	-2.5
87,303	+		DZA65_RS00365	0.76	-1.8
87,318	+		DZA65_RS00365	0.78	+0.1
87,318	+		DZA65_RS00365	0.78	-1.3
87,318	+		DZA65_RS00365	0.78	-0.1
87,318	+		DZA65_RS00365	0.78	-1.4
87,318	+		DZA65_RS00365	0.78	-0.9
87,319	-		DZA65_RS00365	0.78	-2.6
87,319	-				-0.5
87,319	-		DZA65_RS00365	0.78	+1.1
87,319	-		DZA65_RS00365	0.78	-2.6
87,360	-		DZA65_RS00365	0.82	-1.1
87,372	-		DZA65_RS00365	0.84	-2.2
87,450	+				+0.3
87,450	+				-1.7
87,458	+				-0.9
87,534	+				+1.3
87,535	-				+1.2
87,535	-				-1.5
87,567	-				+0.2
87,571	+				-0.8
87,575	-				+1.1
87,576	+				+0.5
87,581	-				+0.1
87,590	+				+0.5
87,596	+				+0.6
87,597	-				-1.2
87,597	-				+1.0
87,597	-				+0.5
87,597	-				+1.1
87,609	+				-0.6
87,681	+				+0.4
87,681	+				+2.2
87,686	+				-1.7
87,713	-				-0.5
87,724	+				+0.8
87,724	+				+0.5
87,724	+				-2.5
87,725	-				-0.1
87,725	-				-0.5
87,725	-				+0.3
87,725	-				-0.5
87,725	-				-1.2
87,725	-				+0.2
87,760	+				-1.3
87,760	+				-1.7
87,761	-				+1.0
87,761	-				+0.9
87,761	-				-2.2
87,761	-				+2.7
87,761	-				-0.0
87,787	+				-1.2
87,787	+				-0.3
87,788	-				+1.4
87,819	+				+0.6
87,822	-				+1.6
87,822	-				+0.5
87,822	-				-0.8
87,831	+				-0.6
87,831	+				-1.6
87,831	+				+0.5
87,831	+				+0.1
87,831	+				-1.5
87,832	-				+0.3
87,832	-				+2.1
87,832	-				-2.5
87,852	+				-3.1
87,852	+				-0.2
87,852	+				-0.1
87,853	-				+1.0
87,853	-				+1.1
87,853	-				-0.6
87,853	-				+0.3
87,853	-				+0.5
87,853	-				+0.4
87,855	+				+2.4
87,855	+				+1.1
87,855	+				-2.4
87,855	+				+0.8
87,855	+				-1.2
87,856	-				-1.5
87,856	-				-1.9
87,856	-				+0.5
87,856	-				+1.1
87,905	+				-0.3
87,905	+				-1.8
87,906	-				-0.6
87,906	-				+0.1
87,927	+				+0.5
88,080	+		DZA65_RS00370	0.24	+1.2
88,080	+		DZA65_RS00370	0.24	+0.4
88,080	+		DZA65_RS00370	0.24	+0.4
88,080	+		DZA65_RS00370	0.24	-0.2
88,080	+		DZA65_RS00370	0.24	+1.3
88,080	+		DZA65_RS00370	0.24	+0.7
88,080	+		DZA65_RS00370	0.24	+2.1
88,081	-		DZA65_RS00370	0.24	-1.9
88,081	-		DZA65_RS00370	0.24	+1.5
88,081	-		DZA65_RS00370	0.24	+0.1
88,081	-		DZA65_RS00370	0.24	+0.5
88,081	-		DZA65_RS00370	0.24	+0.9
88,081	-		DZA65_RS00370	0.24	+0.5
88,081	-		DZA65_RS00370	0.24	+1.7
88,259	+		DZA65_RS00370	0.42	-1.2
88,259	+		DZA65_RS00370	0.42	-2.4
88,259	+		DZA65_RS00370	0.42	-0.4
88,260	-		DZA65_RS00370	0.42	-1.5
88,260	-		DZA65_RS00370	0.42	-0.0
88,260	-		DZA65_RS00370	0.42	-0.2
88,260	-		DZA65_RS00370	0.42	-0.1
88,288	-		DZA65_RS00370	0.45	+1.1
88,353	+		DZA65_RS00370	0.52	-0.1
88,353	+		DZA65_RS00370	0.52	+0.1
88,353	+		DZA65_RS00370	0.52	+0.4
88,353	+		DZA65_RS00370	0.52	-0.9
88,353	+		DZA65_RS00370	0.52	+0.4
88,354	-		DZA65_RS00370	0.52	+1.4
88,354	-		DZA65_RS00370	0.52	+0.5
88,354	-				+0.7
88,354	-		DZA65_RS00370	0.52	-0.2
88,354	-		DZA65_RS00370	0.52	-1.0
88,381	+		DZA65_RS00370	0.55	+0.4
88,381	+		DZA65_RS00370	0.55	-2.2
88,415	-		DZA65_RS00370	0.59	+2.1
88,415	-		DZA65_RS00370	0.59	+1.1