Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS22545

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,875,310	+		DZA65_RS22540	0.30	-0.7
4,875,311	-		DZA65_RS22540	0.30	-0.5
4,875,311	-		DZA65_RS22540	0.30	+0.3
4,875,311	-		DZA65_RS22540	0.30	-0.9
4,875,381	+		DZA65_RS22540	0.37	+2.0
4,875,381	+		DZA65_RS22540	0.37	-0.0
4,875,381	+		DZA65_RS22540	0.37	-1.5
4,875,381	+				+0.8
4,875,381	+		DZA65_RS22540	0.37	+0.1
4,875,381	+		DZA65_RS22540	0.37	+0.5
4,875,381	+		DZA65_RS22540	0.37	-0.2
4,875,381	+		DZA65_RS22540	0.37	+2.5
4,875,381	+		DZA65_RS22540	0.37	+0.5
4,875,381	+		DZA65_RS22540	0.37	+1.9
4,875,382	-		DZA65_RS22540	0.37	+0.6
4,875,382	-		DZA65_RS22540	0.37	+0.6
4,875,382	-		DZA65_RS22540	0.37	+1.1
4,875,382	-		DZA65_RS22540	0.37	-0.4
4,875,382	-		DZA65_RS22540	0.37	+2.5
4,875,382	-		DZA65_RS22540	0.37	+0.4
4,875,469	+		DZA65_RS22540	0.45	-0.7
4,875,469	+		DZA65_RS22540	0.45	-1.6
4,875,469	+		DZA65_RS22540	0.45	+0.5
4,875,469	+		DZA65_RS22540	0.45	+0.3
4,875,469	+		DZA65_RS22540	0.45	-0.4
4,875,470	-		DZA65_RS22540	0.45	-0.1
4,875,470	-		DZA65_RS22540	0.45	-0.7
4,875,470	-		DZA65_RS22540	0.45	+0.1
4,875,491	+		DZA65_RS22540	0.47	-1.1
4,875,498	+		DZA65_RS22540	0.48	+1.3
4,875,498	+		DZA65_RS22540	0.48	-0.8
4,875,498	+		DZA65_RS22540	0.48	-0.3
4,875,498	+		DZA65_RS22540	0.48	-1.8
4,875,498	+		DZA65_RS22540	0.48	+0.8
4,875,499	-		DZA65_RS22540	0.48	+1.5
4,875,499	-		DZA65_RS22540	0.48	-0.5
4,875,499	-		DZA65_RS22540	0.48	+0.6
4,875,499	-		DZA65_RS22540	0.48	+0.2
4,875,499	-		DZA65_RS22540	0.48	-1.1
4,875,499	-		DZA65_RS22540	0.48	+2.1
4,875,499	-		DZA65_RS22540	0.48	-0.9
4,875,499	-		DZA65_RS22540	0.48	-0.9
4,875,499	-		DZA65_RS22540	0.48	-0.5
4,875,513	+		DZA65_RS22540	0.50	+1.4
4,875,513	+		DZA65_RS22540	0.50	+0.8
4,875,513	+		DZA65_RS22540	0.50	+1.8
4,875,513	+		DZA65_RS22540	0.50	+0.9
4,875,514	-		DZA65_RS22540	0.50	+0.1
4,875,514	-		DZA65_RS22540	0.50	+1.7
4,875,514	-		DZA65_RS22540	0.50	+0.1
4,875,514	-		DZA65_RS22540	0.50	-0.1
4,875,514	-		DZA65_RS22540	0.50	-0.5
4,875,568	+		DZA65_RS22540	0.55	-0.2
4,875,568	+		DZA65_RS22540	0.55	+0.3
4,875,569	-		DZA65_RS22540	0.55	+1.1
4,875,569	-		DZA65_RS22540	0.55	+0.1
4,875,569	-		DZA65_RS22540	0.55	-0.5
4,875,569	-		DZA65_RS22540	0.55	-1.5
4,875,569	-		DZA65_RS22540	0.55	-0.9
4,875,648	+		DZA65_RS22540	0.63	-2.4
4,875,649	-		DZA65_RS22540	0.63	-0.1
4,875,658	-		DZA65_RS22540	0.63	-0.3
4,875,664	-		DZA65_RS22540	0.64	+0.7
4,875,677	+		DZA65_RS22540	0.65	-0.6
4,875,678	-		DZA65_RS22540	0.65	+0.1
4,875,678	-		DZA65_RS22540	0.65	-0.9
4,875,687	+		DZA65_RS22540	0.66	+0.1
4,875,687	+		DZA65_RS22540	0.66	+0.1
4,875,687	+		DZA65_RS22540	0.66	+0.1
4,875,687	+		DZA65_RS22540	0.66	+0.6
4,875,688	-		DZA65_RS22540	0.66	-1.8
4,875,688	-		DZA65_RS22540	0.66	+1.4
4,875,688	-		DZA65_RS22540	0.66	+0.4
4,875,713	+		DZA65_RS22540	0.69	-0.1
4,875,756	-		DZA65_RS22540	0.73	+0.5
4,875,817	+		DZA65_RS22540	0.79	+0.0
4,875,818	-		DZA65_RS22540	0.79	+1.6
4,875,818	-		DZA65_RS22540	0.79	-0.7
4,875,818	-		DZA65_RS22540	0.79	+0.1
4,875,818	-		DZA65_RS22540	0.79	-0.3
4,875,818	-		DZA65_RS22540	0.79	-1.3
4,875,834	-		DZA65_RS22540	0.80	+0.1
4,875,912	+		DZA65_RS22540	0.88	+1.1
4,875,913	-		DZA65_RS22540	0.88	-0.4
4,875,913	-		DZA65_RS22540	0.88	-0.2
4,875,913	-		DZA65_RS22540	0.88	+0.1
4,875,913	-		DZA65_RS22540	0.88	+2.1
4,875,949	-				-0.9
4,876,062	+				+2.1
4,876,062	+				+1.0
4,876,062	+				-0.7
4,876,062	+				-0.9
4,876,063	-				+0.7
4,876,063	-				+1.6
4,876,063	-				+0.3
4,876,063	-				-0.7
4,876,066	+				+2.1
4,876,066	+				-0.5
4,876,067	-				+0.2
4,876,134	+				+0.6
4,876,134	+				+1.8
4,876,134	+				-0.4
4,876,135	-				-0.1
4,876,135	-				-0.7
4,876,158	+				-0.2
4,876,158	+				+0.4
4,876,159	-				+0.7
4,876,170	+				+2.4
4,876,170	+				-0.8
4,876,171	-				-1.1
4,876,187	+				-2.6
4,876,187	+				-1.5
4,876,188	-				+0.5
4,876,207	+				-0.8
4,876,207	+				+0.3
4,876,207	+				+0.4
4,876,207	+				-0.1
4,876,207	+				+0.5
4,876,207	+				-1.5
4,876,207	+				+3.6
4,876,207	+				-1.1
4,876,207	+				+0.9
4,876,208	-				-1.3
4,876,208	-				+1.4
4,876,208	-				-0.2
4,876,208	-				-0.0
4,876,208	-				-0.3
4,876,208	-				+2.2
4,876,208	-				-0.5
4,876,208	-				+0.6
4,876,208	-				-1.9
4,876,231	+				+1.1
4,876,231	+				-0.7
4,876,231	+				-1.2
4,876,232	-				-0.4
4,876,232	-				-0.6
4,876,232	-				+0.7
4,876,232	-				-1.5
4,876,232	-				-0.1
4,876,232	-				+1.3
4,876,318	+		DZA65_RS22545	0.11	+1.6
4,876,354	+		DZA65_RS22545	0.15	-0.7
4,876,354	+		DZA65_RS22545	0.15	-1.9
4,876,355	-		DZA65_RS22545	0.15	+1.2
4,876,355	-		DZA65_RS22545	0.15	+1.1
4,876,355	-		DZA65_RS22545	0.15	-2.5
4,876,434	-		DZA65_RS22545	0.24	-0.9
4,876,434	-		DZA65_RS22545	0.24	-2.9
4,876,579	+		DZA65_RS22545	0.39	+0.5
4,876,580	-		DZA65_RS22545	0.39	+0.3
4,876,631	+		DZA65_RS22545	0.44	-1.5
4,876,631	+		DZA65_RS22545	0.44	+1.1
4,876,632	-		DZA65_RS22545	0.44	+0.1
4,876,749	+		DZA65_RS22545	0.56	+0.9
4,876,749	+		DZA65_RS22545	0.56	+0.8
4,876,749	+		DZA65_RS22545	0.56	-0.9
4,876,749	+		DZA65_RS22545	0.56	+0.7
4,876,749	+		DZA65_RS22545	0.56	+0.4
4,876,757	+		DZA65_RS22545	0.57	-0.4
4,876,757	+		DZA65_RS22545	0.57	+0.3
4,876,757	+		DZA65_RS22545	0.57	-1.5
4,876,757	+		DZA65_RS22545	0.57	-0.4
4,876,757	+		DZA65_RS22545	0.57	-0.3
4,876,757	+		DZA65_RS22545	0.57	-0.1
4,876,758	-		DZA65_RS22545	0.57	-0.1
4,876,758	-		DZA65_RS22545	0.57	+0.5
4,876,758	-		DZA65_RS22545	0.57	-0.6
4,876,758	-		DZA65_RS22545	0.57	+0.8
4,876,837	+		DZA65_RS22545	0.66	-0.5
4,876,838	-		DZA65_RS22545	0.66	+0.8
4,876,838	-		DZA65_RS22545	0.66	+2.6
4,876,849	+		DZA65_RS22545	0.67	-2.3
4,876,850	-		DZA65_RS22545	0.67	-0.4
4,876,850	-		DZA65_RS22545	0.67	-0.0
4,876,850	-		DZA65_RS22545	0.67	+0.1
4,876,964	+		DZA65_RS22545	0.79	-0.5
4,876,964	+		DZA65_RS22545	0.79	-1.4
4,876,965	-		DZA65_RS22545	0.79	+0.6
4,876,965	-		DZA65_RS22545	0.79	-0.7
4,876,965	-		DZA65_RS22545	0.79	-1.4
4,876,965	-		DZA65_RS22545	0.79	-1.9
4,876,965	-		DZA65_RS22545	0.79	+1.1
4,876,988	+		DZA65_RS22545	0.81	-0.7
4,876,988	+		DZA65_RS22545	0.81	-2.9
4,876,988	+		DZA65_RS22545	0.81	+0.7
4,876,988	+		DZA65_RS22545	0.81	-0.4
4,876,988	+		DZA65_RS22545	0.81	+0.1
4,876,988	+		DZA65_RS22545	0.81	-0.3
4,876,988	+		DZA65_RS22545	0.81	+3.3
4,876,988	+		DZA65_RS22545	0.81	-1.5
4,876,988	+		DZA65_RS22545	0.81	+0.6
4,876,988	+		DZA65_RS22545	0.81	-0.7
4,876,988	+		DZA65_RS22545	0.81	-0.4
4,876,988	+		DZA65_RS22545	0.81	-1.6
4,876,988	+		DZA65_RS22545	0.81	-0.3
4,876,988	+		DZA65_RS22545	0.81	-0.3
4,876,988	+		DZA65_RS22545	0.81	-0.5
4,876,989	-		DZA65_RS22545	0.81	+0.3
4,876,989	-		DZA65_RS22545	0.81	-0.2
4,876,989	-		DZA65_RS22545	0.81	+0.5
4,876,989	-		DZA65_RS22545	0.81	+1.0
4,876,989	-		DZA65_RS22545	0.81	+1.0
4,876,989	-		DZA65_RS22545	0.81	+1.1
4,876,989	-		DZA65_RS22545	0.81	-1.6
4,876,989	-		DZA65_RS22545	0.81	-0.3
4,876,989	-		DZA65_RS22545	0.81	+0.3
4,876,989	-		DZA65_RS22545	0.81	-0.3
4,876,989	-		DZA65_RS22545	0.81	-1.3
4,876,989	-		DZA65_RS22545	0.81	-0.4
4,876,989	-		DZA65_RS22545	0.81	+0.6
4,876,990	+		DZA65_RS22545	0.81	-1.4
4,876,990	+		DZA65_RS22545	0.81	-0.4
4,876,991	-		DZA65_RS22545	0.82	-0.5
4,876,991	-		DZA65_RS22545	0.82	-1.7
4,876,991	-		DZA65_RS22545	0.82	-0.5
4,877,098	+				+1.5
4,877,098	+				+0.9
4,877,098	+				-0.7
4,877,098	+				-0.5
4,877,098	+				+0.1
4,877,098	+				+0.6
4,877,099	-				-2.3
4,877,099	-				+1.4
4,877,105	-				-2.3
4,877,105	-				-0.3
4,877,105	-				+1.5
4,877,312	+		DZA65_RS22550	0.16	-0.7
4,877,313	-		DZA65_RS22550	0.16	-0.9
4,877,313	-		DZA65_RS22550	0.16	-0.4
4,877,386	-		DZA65_RS22550	0.25	+0.2
4,877,485	+		DZA65_RS22550	0.36	-1.9
4,877,485	+		DZA65_RS22550	0.36	+0.1
4,877,485	+		DZA65_RS22550	0.36	-0.4
4,877,486	-		DZA65_RS22550	0.36	+2.3
4,877,587	+		DZA65_RS22550	0.47	-1.9
4,877,589	+		DZA65_RS22550	0.48	-0.8
4,877,589	+		DZA65_RS22550	0.48	-0.7
4,877,589	+		DZA65_RS22550	0.48	+0.3
4,877,589	+		DZA65_RS22550	0.48	-1.7
4,877,590	-		DZA65_RS22550	0.48	+1.3
4,877,590	-		DZA65_RS22550	0.48	+1.2
4,877,590	-		DZA65_RS22550	0.48	+0.1
4,877,590	-		DZA65_RS22550	0.48	+0.4
4,877,665	-		DZA65_RS22550	0.56	+1.7
4,877,665	-		DZA65_RS22550	0.56	-0.8
4,877,729	-		DZA65_RS22550	0.63	+0.1
4,877,729	-		DZA65_RS22550	0.63	+0.1
4,877,808	-		DZA65_RS22550	0.72	-0.8
4,877,856	+		DZA65_RS22550	0.78	+2.1
4,877,856	+		DZA65_RS22550	0.78	-0.5
4,877,857	-		DZA65_RS22550	0.78	-0.5
4,877,982	-				+1.5
4,878,052	+				-0.1
4,878,052	+				+0.3
4,878,076	+				+0.9
4,878,076	+				+1.1
4,878,076	+				+1.2
4,878,077	-				-1.1
4,878,077	-				-0.3
4,878,077	-				+0.1
4,878,077	-				-0.1
4,878,089	+				-1.7
4,878,089	+				+2.2
4,878,089	+				+0.1
4,878,089	+				-0.8
4,878,089	+				-1.6
4,878,089	+				-0.9
4,878,089	+				-0.0
4,878,089	+				+0.4
4,878,089	+				+1.1
4,878,089	+				-0.5
4,878,089	+				+0.7
4,878,089	+				-2.1
4,878,089	+				+0.2
4,878,089	+				+0.5
4,878,089	+				-0.7
4,878,090	-				+0.6
4,878,090	-				-1.8
4,878,090	-				+0.1
4,878,090	-				-1.7
4,878,090	-				+0.1
4,878,090	-				+1.1
4,878,090	-				-2.8
4,878,090	-				-0.2
4,878,090	-				-1.3
4,878,090	-				+0.1
4,878,090	-				+0.3
4,878,090	-				-1.5
4,878,090	-				-0.8
4,878,090	-				+1.7
4,878,090	-				-1.7
4,878,090	-				-0.1
4,878,090	-				-0.2
4,878,090	-				+0.3
4,878,090	-				-0.9
4,878,090	-				+1.8
4,878,090	-				+1.1
4,878,091	+				-0.3
4,878,091	+				-0.8
4,878,091	+				-0.3
4,878,091	+				-0.3
4,878,091	+				-0.7
4,878,091	+				-1.3
4,878,091	+				-1.2
4,878,091	+				-0.6
4,878,091	+				-1.9
4,878,091	+				+0.4
4,878,091	+				-0.3
4,878,091	+				+0.7
4,878,091	+				+0.6
4,878,091	+				-0.5
4,878,091	+				-1.1
4,878,091	+				+0.5
4,878,092	-				-0.4
4,878,092	-				+1.5
4,878,092	-				+0.9
4,878,092	-				-0.8
4,878,092	-				-0.3
4,878,092	-				+0.6
4,878,092	-				-0.7
4,878,092	-				+0.5
4,878,092	-				-1.5
4,878,092	-				+0.1
4,878,150	+				+0.4
4,878,150	+				-0.3
4,878,150	+				-0.9
4,878,150	+				-0.8
4,878,150	+				-0.3
4,878,150	+				-0.4
4,878,150	+				+1.4
4,878,151	-				-1.5
4,878,151	-				-0.2