Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21980

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,751,606	+				-1.2
4,751,606	+				-1.9
4,751,606	+				-0.5
4,751,606	+				-0.9
4,751,606	+				-1.6
4,751,606	+				+0.2
4,751,607	-				+0.6
4,751,607	-				-1.0
4,751,607	-				-0.9
4,751,607	-				+0.3
4,751,636	+				-1.7
4,751,636	+				-0.6
4,751,636	+				+1.1
4,751,636	+				+0.1
4,751,637	-				+1.1
4,751,637	-				+0.1
4,751,637	-				+0.5
4,751,688	-				+0.8
4,751,715	+				+0.1
4,751,716	-				-1.5
4,751,716	-				-1.7
4,751,716	-				-0.4
4,751,812	+		DZA65_RS21970	0.18	-0.2
4,751,879	+		DZA65_RS21970	0.49	+0.9
4,751,879	+		DZA65_RS21970	0.49	-0.0
4,751,880	-		DZA65_RS21970	0.49	+1.8
4,751,880	-		DZA65_RS21970	0.49	+1.5
4,751,880	-		DZA65_RS21970	0.49	+2.0
4,751,896	+		DZA65_RS21970	0.57	-1.0
4,751,897	-		DZA65_RS21970	0.57	-1.9
4,751,928	-		DZA65_RS21970	0.71	-0.4
4,751,928	-		DZA65_RS21970	0.71	+1.3
4,751,928	-		DZA65_RS21970	0.71	-0.6
4,751,931	+		DZA65_RS21970	0.73	+0.5
4,751,931	+		DZA65_RS21970	0.73	+0.3
4,751,932	-		DZA65_RS21970	0.73	+0.7
4,751,932	-		DZA65_RS21970	0.73	+0.6
4,751,932	-		DZA65_RS21970	0.73	-0.7
4,751,932	-		DZA65_RS21970	0.73	-0.4
4,751,932	-		DZA65_RS21970	0.73	+0.1
4,751,932	-		DZA65_RS21970	0.73	-0.8
4,751,933	+		DZA65_RS21970	0.74	+1.2
4,751,933	+		DZA65_RS21970	0.74	-0.1
4,751,933	+		DZA65_RS21970	0.74	+1.8
4,751,934	-		DZA65_RS21970	0.74	+2.0
4,751,960	+		DZA65_RS21970	0.86	-0.0
4,751,960	+		DZA65_RS21970	0.86	+0.8
4,751,960	+		DZA65_RS21970	0.86	-0.7
4,751,961	-		DZA65_RS21970	0.86	-0.1
4,751,961	-		DZA65_RS21970	0.86	-0.8
4,751,961	-		DZA65_RS21970	0.86	+0.8
4,751,961	-		DZA65_RS21970	0.86	+0.9
4,752,012	+				+1.6
4,752,028	-				-0.2
4,752,061	-				+0.7
4,752,061	-				-0.1
4,752,074	-				+0.0
4,752,092	+				-1.9
4,752,093	-				-1.1
4,752,118	+				-0.1
4,752,119	-				+1.1
4,752,119	-				-1.5
4,752,119	-				-0.5
4,752,119	-				+0.2
4,752,119	-				-1.6
4,752,160	+				-0.5
4,752,160	+				-2.1
4,752,203	+				-0.6
4,752,308	+		DZA65_RS21975	0.31	-0.1
4,752,308	+		DZA65_RS21975	0.31	+0.6
4,752,308	+		DZA65_RS21975	0.31	-1.5
4,752,308	+		DZA65_RS21975	0.31	+1.3
4,752,308	+		DZA65_RS21975	0.31	-1.9
4,752,308	+		DZA65_RS21975	0.31	+2.1
4,752,308	+		DZA65_RS21975	0.31	-0.6
4,752,308	+		DZA65_RS21975	0.31	+0.4
4,752,308	+		DZA65_RS21975	0.31	+0.4
4,752,309	-		DZA65_RS21975	0.32	-0.4
4,752,309	-		DZA65_RS21975	0.32	+0.9
4,752,309	-		DZA65_RS21975	0.32	+0.3
4,752,309	-		DZA65_RS21975	0.32	-0.7
4,752,309	-		DZA65_RS21975	0.32	+1.3
4,752,309	-		DZA65_RS21975	0.32	-1.6
4,752,309	-		DZA65_RS21975	0.32	+0.9
4,752,309	-		DZA65_RS21975	0.32	+1.4
4,752,309	-		DZA65_RS21975	0.32	-1.5
4,752,309	-		DZA65_RS21975	0.32	+2.1
4,752,422	+		DZA65_RS21975	0.76	-1.7
4,752,423	-		DZA65_RS21975	0.76	-0.7
4,752,423	-		DZA65_RS21975	0.76	+0.5
4,752,434	+		DZA65_RS21975	0.80	+1.6
4,752,434	+		DZA65_RS21975	0.80	-0.4
4,752,434	+		DZA65_RS21975	0.80	+0.1
4,752,434	+		DZA65_RS21975	0.80	+2.1
4,752,435	-		DZA65_RS21975	0.81	+0.8
4,752,435	-		DZA65_RS21975	0.81	-1.5
4,752,435	-		DZA65_RS21975	0.81	+0.4
4,752,435	-		DZA65_RS21975	0.81	+0.2
4,752,435	-		DZA65_RS21975	0.81	+0.5
4,752,435	-		DZA65_RS21975	0.81	+1.6
4,752,435	-		DZA65_RS21975	0.81	+0.5
4,752,435	-		DZA65_RS21975	0.81	-0.2
4,752,478	+				+2.4
4,752,478	+				-0.3
4,752,478	+				+0.8
4,752,478	+				-1.9
4,752,478	+				+0.6
4,752,478	+				-0.2
4,752,478	+				+0.3
4,752,479	-				+0.4
4,752,479	-				+0.5
4,752,479	-				+0.3
4,752,479	-				-0.9
4,752,479	-				+0.8
4,752,479	-				-0.3
4,752,482	+				+0.6
4,752,482	+				-0.9
4,752,482	+				+0.2
4,752,482	+				+2.8
4,752,482	+				+0.7
4,752,482	+				+0.3
4,752,482	+				-0.9
4,752,482	+				+0.7
4,752,482	+				+4.5
4,752,483	-				-0.3
4,752,483	-				+0.5
4,752,483	-				+2.2
4,752,483	-				-0.8
4,752,483	-				-1.3
4,752,483	-				+0.4
4,752,483	-				-0.7
4,752,483	-				-0.9
4,752,483	-				+1.9
4,752,483	-				+1.1
4,752,507	+				+0.1
4,752,550	+				-1.0
4,752,551	-				-0.5
4,752,576	+				-0.2
4,752,576	+				+1.3
4,752,576	+				-0.5
4,752,576	+				-0.1
4,752,576	+				-0.5
4,752,576	+				-0.4
4,752,577	-				+0.2
4,752,577	-				-1.1
4,752,577	-				-1.7
4,752,580	+				+1.1
4,752,603	+				-1.1
4,752,603	+				-0.5
4,752,603	+				+1.6
4,752,603	+				-0.6
4,752,603	+				-0.5
4,752,603	+				+0.6
4,752,603	+				+0.4
4,752,604	-				+1.2
4,752,604	-				-0.7
4,752,604	-				-0.9
4,752,723	+		DZA65_RS21980	0.21	-0.3
4,752,723	+		DZA65_RS21980	0.21	-0.1
4,752,723	+		DZA65_RS21980	0.21	-1.7
4,752,723	+		DZA65_RS21980	0.21	-0.3
4,752,724	-		DZA65_RS21980	0.21	+0.5
4,752,724	-		DZA65_RS21980	0.21	-0.4
4,752,724	-		DZA65_RS21980	0.21	-1.5
4,752,724	-		DZA65_RS21980	0.21	-0.0
4,752,724	-		DZA65_RS21980	0.21	+2.0
4,752,724	-		DZA65_RS21980	0.21	+0.5
4,752,774	+		DZA65_RS21980	0.29	-0.3
4,752,774	+		DZA65_RS21980	0.29	+0.7
4,752,774	+		DZA65_RS21980	0.29	+0.2
4,752,774	+		DZA65_RS21980	0.29	-1.8
4,752,774	+		DZA65_RS21980	0.29	+0.3
4,752,775	-		DZA65_RS21980	0.29	-0.1
4,752,775	-		DZA65_RS21980	0.29	+0.8
4,752,775	-		DZA65_RS21980	0.29	-0.1
4,752,775	-		DZA65_RS21980	0.29	+0.6
4,752,775	-		DZA65_RS21980	0.29	+2.8
4,752,963	+		DZA65_RS21980	0.56	+0.3
4,752,963	+		DZA65_RS21980	0.56	-2.3
4,752,964	-		DZA65_RS21980	0.56	+0.6
4,752,982	+		DZA65_RS21980	0.58	-0.5
4,752,993	-		DZA65_RS21980	0.60	-2.4
4,752,993	-		DZA65_RS21980	0.60	-0.6
4,753,053	+		DZA65_RS21980	0.69	-0.2
4,753,053	+		DZA65_RS21980	0.69	+0.6
4,753,054	-		DZA65_RS21980	0.69	+0.1
4,753,054	-		DZA65_RS21980	0.69	+0.1
4,753,054	-		DZA65_RS21980	0.69	+1.9
4,753,054	-		DZA65_RS21980	0.69	-2.1
4,753,054	-		DZA65_RS21980	0.69	+2.1
4,753,054	-		DZA65_RS21980	0.69	+1.1
4,753,210	+				-0.3
4,753,210	+				+0.1
4,753,210	+				+0.1
4,753,211	-				+1.1
4,753,211	-				-0.9
4,753,211	-				+2.5
4,753,211	-				+1.0
4,753,262	+				-1.4
4,753,263	-				+0.8
4,753,263	-				-1.5
4,753,270	+				+0.1
4,753,271	-				-1.5
4,753,301	+				-0.7
4,753,301	+				-1.1
4,753,301	+				+0.1
4,753,301	+				-0.2
4,753,301	+				+0.7
4,753,302	-				+0.6
4,753,302	-				+0.3
4,753,302	-				-0.2
4,753,302	-				-1.1
4,753,302	-				-2.4
4,753,303	+				-0.9
4,753,303	+				+2.0
4,753,303	+				-0.8
4,753,303	+				+1.5
4,753,304	-				-0.4
4,753,304	-				-1.2
4,753,309	+				+0.6
4,753,309	+				+0.1
4,753,309	+				+0.9
4,753,309	+				-1.3
4,753,309	+				-0.6
4,753,309	+				-0.3
4,753,309	+				+0.7
4,753,309	+				-1.5
4,753,309	+				-0.9
4,753,309	+				-2.1
4,753,309	+				+0.3
4,753,309	+				-0.1
4,753,310	-				+1.2
4,753,310	-				-1.3
4,753,310	-				+0.7
4,753,310	-				-0.1
4,753,310	-				+0.7
4,753,310	-				+0.2
4,753,310	-				+0.4
4,753,310	-				-0.5
4,753,310	-				+0.1
4,753,310	-				-0.3
4,753,310	-				-2.1
4,753,316	+				-1.5
4,753,317	-				-0.7
4,753,317	-				-1.3
4,753,317	-				-1.9
4,753,318	+				+0.2
4,753,319	-				-2.1
4,753,319	-				+1.1
4,753,331	+				-1.3
4,753,333	+				+0.3
4,753,333	+				-0.7
4,753,333	+				+0.8
4,753,333	+				-0.2
4,753,334	-				-0.5
4,753,334	-				+0.1
4,753,334	-				+2.1
4,753,334	-				-1.3
4,753,334	-				-0.4
4,753,334	-				+0.4
4,753,334	-				-1.7
4,753,339	+				-0.8
4,753,339	+				+0.7
4,753,339	+				+1.1
4,753,339	+				-0.5
4,753,339	+				+0.3
4,753,339	+				-0.3
4,753,339	+				-1.1
4,753,339	+				-0.1
4,753,339	+				-2.1
4,753,339	+				+0.6
4,753,339	+				-0.7
4,753,339	+				+0.2
4,753,339	+				+0.6
4,753,339	+				+0.1
4,753,339	+				+0.3
4,753,340	-				-0.6
4,753,340	-				-1.4
4,753,340	-				+0.1
4,753,340	-				-1.1
4,753,340	-				-1.5
4,753,340	-				+1.1
4,753,340	-				+0.4
4,753,340	-				+0.6
4,753,340	-				-0.9
4,753,340	-				+0.1
4,753,346	+				+0.9
4,753,347	-				-1.1
4,753,348	+				+0.5
4,753,348	+				+0.5
4,753,348	+				-0.1
4,753,349	-				-1.7
4,753,349	-				+0.7
4,753,349	-				-0.3
4,753,349	-				-0.6
4,753,354	+				+0.3
4,753,354	+				-0.5
4,753,355	-				-0.9
4,753,355	-				+0.2
4,753,367	+				+0.1
4,753,367	+				+0.6
4,753,367	+				+2.1
4,753,368	-				+0.9
4,753,368	-				-1.3
4,753,368	-				+1.2
4,753,368	-				-1.5
4,753,372	+				+0.1
4,753,395	+				-1.9
4,753,395	+				+0.6
4,753,396	-				+0.6
4,753,399	+				+0.1
4,753,399	+				-0.0
4,753,456	+				-0.7
4,753,488	+				-0.1
4,753,488	+				+0.6
4,753,489	-				+1.0
4,753,489	-				-2.3
4,753,489	-				+0.4
4,753,489	-				-0.3
4,753,553	+				-1.1
4,753,553	+				+0.6
4,753,553	+				+0.4
4,753,553	+				+0.3
4,753,553	+				-0.7
4,753,553	+				+0.1
4,753,554	-				+2.1
4,753,554	-				+0.1
4,753,554	-				+0.1
4,753,554	-				+0.3
4,753,629	+				+1.1
4,753,629	+				+0.4
4,753,630	-				+0.5
4,753,630	-				-0.2
4,753,638	+				+0.8
4,753,638	+				-0.2
4,753,638	+				-0.7
4,753,638	+				-0.9
4,753,639	-				-0.8
4,753,639	-				+0.5
4,753,639	-				-0.3
4,753,639	-				+1.5
4,753,639	-				+0.4
4,753,639	-				-2.2
4,753,640	+				-0.9
4,753,640	+				+0.4
4,753,640	+				+0.7
4,753,640	+				-1.3
4,753,640	+				-0.4
4,753,640	+				+0.8
4,753,640	+				+1.3
4,753,640	+				-0.9
4,753,640	+				+0.9
4,753,640	+				+0.1
4,753,640	+				-0.9
4,753,640	+				-0.2
4,753,641	-				-0.9
4,753,641	-				-0.4
4,753,641	-				+0.5
4,753,641	-				-0.9
4,753,641	-				+0.3
4,753,641	-				+1.1
4,753,641	-				+0.6
4,753,641	-				-0.1
4,753,641	-				-1.8
4,753,641	-				-0.5
4,753,641	-				-0.6
4,753,641	-				-1.7
4,753,642	+				-1.1
4,753,642	+				-1.3
4,753,642	+				+0.9
4,753,642	+				-1.9
4,753,642	+				+0.3
4,753,642	+				-0.3
4,753,642	+				+0.3
4,753,642	+				-0.7
4,753,642	+				+2.1
4,753,642	+				-0.1
4,753,642	+				+0.4
4,753,642	+				+0.6
4,753,642	+				-0.7
4,753,642	+				+0.4
4,753,642	+				-2.4
4,753,642	+				+1.1
4,753,642	+				+0.8
4,753,642	+				+1.6
4,753,642	+				-0.2
4,753,642	+				-0.4
4,753,642	+				+1.4
4,753,643	-				-0.2
4,753,643	-				-1.3
4,753,643	-				-0.2
4,753,643	-				+0.3
4,753,643	-				-0.2
4,753,643	-				+1.1
4,753,643	-				-0.0
4,753,643	-				+0.5
4,753,643	-				-0.1
4,753,643	-				-0.5
4,753,643	-				-1.6
4,753,643	-				-0.9
4,753,643	-				+1.6
4,753,643	-				-0.7
4,753,643	-				-0.5
4,753,643	-				+0.2
4,753,643	-				-0.3
4,753,643	-				-1.6
4,753,647	+				-1.8
4,753,647	+				-0.1
4,753,647	+				+1.1
4,753,661	-				+1.4
4,753,795	+		DZA65_RS21985	0.11	-0.1
4,753,795	+		DZA65_RS21985	0.11	-2.1
4,753,796	-		DZA65_RS21985	0.11	-0.2
4,753,796	-		DZA65_RS21985	0.11	-1.0
4,753,861	-		DZA65_RS21985	0.17	+0.3
4,753,861	-		DZA65_RS21985	0.17	+0.1
4,753,893	-		DZA65_RS21985	0.20	-2.4
4,753,901	+		DZA65_RS21985	0.20	+1.1
4,753,901	+		DZA65_RS21985	0.20	-0.1
4,753,901	+		DZA65_RS21985	0.20	+1.1
4,753,901	+		DZA65_RS21985	0.20	-2.3
4,753,902	-		DZA65_RS21985	0.20	-0.4
4,753,902	-		DZA65_RS21985	0.20	+0.5
4,753,902	-		DZA65_RS21985	0.20	+3.1
4,753,913	+		DZA65_RS21985	0.21	-0.9
4,753,913	+		DZA65_RS21985	0.21	-1.3
4,753,913	+		DZA65_RS21985	0.21	-0.7
4,753,914	-		DZA65_RS21985	0.21	+2.1
4,753,914	-		DZA65_RS21985	0.21	+0.8
4,753,914	-		DZA65_RS21985	0.21	+0.3
4,753,914	-		DZA65_RS21985	0.21	+0.6
4,753,930	+		DZA65_RS21985	0.23	-2.1
4,753,930	+		DZA65_RS21985	0.23	-1.3
4,753,931	-		DZA65_RS21985	0.23	+0.1
4,753,931	-		DZA65_RS21985	0.23	-0.2
4,753,964	+		DZA65_RS21985	0.26	-0.4
4,753,964	+		DZA65_RS21985	0.26	-1.2
4,753,964	+		DZA65_RS21985	0.26	-0.6
4,753,965	-		DZA65_RS21985	0.26	-0.3
4,753,965	-		DZA65_RS21985	0.26	-1.3
4,753,965	-		DZA65_RS21985	0.26	-0.4
4,754,010	-		DZA65_RS21985	0.29	+0.3
4,754,108	+		DZA65_RS21985	0.38	+0.2
4,754,109	-		DZA65_RS21985	0.38	-0.8
4,754,141	+		DZA65_RS21985	0.41	-0.7
4,754,141	+		DZA65_RS21985	0.41	-0.5
4,754,141	+		DZA65_RS21985	0.41	-0.5
4,754,142	-		DZA65_RS21985	0.41	+0.7
4,754,142	-		DZA65_RS21985	0.41	-0.1
4,754,142	-		DZA65_RS21985	0.41	-1.4
4,754,142	-		DZA65_RS21985	0.41	-2.3
4,754,142	-		DZA65_RS21985	0.41	-0.2
4,754,142	-		DZA65_RS21985	0.41	-2.3
4,754,142	-		DZA65_RS21985	0.41	-0.5
4,754,189	-		DZA65_RS21985	0.45	-0.6
4,754,258	+		DZA65_RS21985	0.50	+0.3
4,754,259	-		DZA65_RS21985	0.50	-1.9
4,754,259	-		DZA65_RS21985	0.50	-0.9