Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS21970

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,750,819	+		DZA65_RS21965	0.59	+0.5
4,750,819	+		DZA65_RS21965	0.59	-1.4
4,750,819	+		DZA65_RS21965	0.59	+1.2
4,750,819	+		DZA65_RS21965	0.59	-0.2
4,750,819	+		DZA65_RS21965	0.59	-1.3
4,750,820	-		DZA65_RS21965	0.59	+0.7
4,750,820	-		DZA65_RS21965	0.59	-1.5
4,750,820	-		DZA65_RS21965	0.59	-1.1
4,751,018	+		DZA65_RS21965	0.74	-0.4
4,751,018	+		DZA65_RS21965	0.74	+0.1
4,751,018	+		DZA65_RS21965	0.74	-1.5
4,751,018	+		DZA65_RS21965	0.74	+0.6
4,751,018	+		DZA65_RS21965	0.74	+0.1
4,751,018	+		DZA65_RS21965	0.74	+1.9
4,751,019	-		DZA65_RS21965	0.74	+0.5
4,751,019	-		DZA65_RS21965	0.74	-0.5
4,751,246	+				+1.0
4,751,261	+				-0.0
4,751,345	-				-0.9
4,751,345	-				+2.6
4,751,379	+				-2.3
4,751,387	+				+0.1
4,751,423	+				+3.1
4,751,423	+				-0.9
4,751,446	+				+1.2
4,751,446	+				+0.1
4,751,446	+				-1.0
4,751,446	+				-2.1
4,751,446	+				+0.3
4,751,447	-				+0.8
4,751,447	-				+2.9
4,751,447	-				+1.1
4,751,452	-				+0.5
4,751,480	-				+0.6
4,751,490	+				+0.1
4,751,490	+				-1.3
4,751,490	+				+0.3
4,751,491	-				+1.6
4,751,503	+				-0.4
4,751,541	+				+0.6
4,751,541	+				+0.3
4,751,541	+				-0.9
4,751,541	+				+0.7
4,751,541	+				+0.1
4,751,541	+				+1.1
4,751,541	+				+0.5
4,751,541	+				+1.0
4,751,541	+				-0.0
4,751,541	+				+0.1
4,751,541	+				+1.8
4,751,541	+				-0.5
4,751,541	+				-0.7
4,751,541	+				-0.5
4,751,541	+				+0.8
4,751,541	+				-1.5
4,751,541	+				-0.6
4,751,541	+				+0.1
4,751,541	+				-0.2
4,751,541	+				-0.6
4,751,541	+				+0.5
4,751,541	+				-2.5
4,751,541	+				+0.2
4,751,541	+				+1.1
4,751,541	+				+2.1
4,751,542	-				+3.1
4,751,542	-				-0.4
4,751,542	-				+1.2
4,751,542	-				-1.5
4,751,542	-				+0.2
4,751,542	-				-0.2
4,751,542	-				+1.3
4,751,542	-				+2.1
4,751,542	-				-0.4
4,751,542	-				+3.4
4,751,542	-				+2.3
4,751,542	-				-1.9
4,751,542	-				+0.4
4,751,542	-				+1.1
4,751,542	-				+1.4
4,751,542	-				+1.3
4,751,542	-				+0.9
4,751,542	-				+0.3
4,751,542	-				+0.8
4,751,558	+				-0.5
4,751,558	+				+3.4
4,751,559	-				-0.1
4,751,561	+				+0.4
4,751,561	+				-0.2
4,751,561	+				-1.5
4,751,561	+				-1.1
4,751,561	+				-0.8
4,751,561	+				-0.1
4,751,562	-				-1.7
4,751,573	-				+0.9
4,751,606	+				-1.2
4,751,606	+				-1.9
4,751,606	+				-0.5
4,751,606	+				-0.9
4,751,606	+				-1.6
4,751,606	+				+0.2
4,751,607	-				+0.6
4,751,607	-				-1.0
4,751,607	-				-0.9
4,751,607	-				+0.3
4,751,636	+				-1.7
4,751,636	+				-0.6
4,751,636	+				+1.1
4,751,636	+				+0.1
4,751,637	-				+1.1
4,751,637	-				+0.1
4,751,637	-				+0.5
4,751,688	-				+0.8
4,751,715	+				+0.1
4,751,716	-				-1.5
4,751,716	-				-1.7
4,751,716	-				-0.4
4,751,812	+		DZA65_RS21970	0.18	-0.2
4,751,879	+		DZA65_RS21970	0.49	+0.9
4,751,879	+		DZA65_RS21970	0.49	-0.0
4,751,880	-		DZA65_RS21970	0.49	+1.8
4,751,880	-		DZA65_RS21970	0.49	+1.5
4,751,880	-		DZA65_RS21970	0.49	+2.0
4,751,896	+		DZA65_RS21970	0.57	-1.0
4,751,897	-		DZA65_RS21970	0.57	-1.9
4,751,928	-		DZA65_RS21970	0.71	-0.4
4,751,928	-		DZA65_RS21970	0.71	+1.3
4,751,928	-		DZA65_RS21970	0.71	-0.6
4,751,931	+		DZA65_RS21970	0.73	+0.5
4,751,931	+		DZA65_RS21970	0.73	+0.3
4,751,932	-		DZA65_RS21970	0.73	+0.7
4,751,932	-		DZA65_RS21970	0.73	+0.6
4,751,932	-		DZA65_RS21970	0.73	-0.7
4,751,932	-		DZA65_RS21970	0.73	-0.4
4,751,932	-		DZA65_RS21970	0.73	+0.1
4,751,932	-		DZA65_RS21970	0.73	-0.8
4,751,933	+		DZA65_RS21970	0.74	+1.2
4,751,933	+		DZA65_RS21970	0.74	-0.1
4,751,933	+		DZA65_RS21970	0.74	+1.8
4,751,934	-		DZA65_RS21970	0.74	+2.0
4,751,960	+		DZA65_RS21970	0.86	-0.0
4,751,960	+		DZA65_RS21970	0.86	+0.8
4,751,960	+		DZA65_RS21970	0.86	-0.7
4,751,961	-		DZA65_RS21970	0.86	-0.1
4,751,961	-		DZA65_RS21970	0.86	-0.8
4,751,961	-		DZA65_RS21970	0.86	+0.8
4,751,961	-		DZA65_RS21970	0.86	+0.9
4,752,012	+				+1.6
4,752,028	-				-0.2
4,752,061	-				+0.7
4,752,061	-				-0.1
4,752,074	-				+0.0
4,752,092	+				-1.9
4,752,093	-				-1.1
4,752,118	+				-0.1
4,752,119	-				+1.1
4,752,119	-				-1.5
4,752,119	-				-0.5
4,752,119	-				+0.2
4,752,119	-				-1.6
4,752,160	+				-0.5
4,752,160	+				-2.1
4,752,203	+				-0.6
4,752,308	+		DZA65_RS21975	0.31	-0.1
4,752,308	+		DZA65_RS21975	0.31	+0.6
4,752,308	+		DZA65_RS21975	0.31	-1.5
4,752,308	+		DZA65_RS21975	0.31	+1.3
4,752,308	+		DZA65_RS21975	0.31	-1.9
4,752,308	+		DZA65_RS21975	0.31	+2.1
4,752,308	+		DZA65_RS21975	0.31	-0.6
4,752,308	+		DZA65_RS21975	0.31	+0.4
4,752,308	+		DZA65_RS21975	0.31	+0.4
4,752,309	-		DZA65_RS21975	0.32	-0.4
4,752,309	-		DZA65_RS21975	0.32	+0.9
4,752,309	-		DZA65_RS21975	0.32	+0.3
4,752,309	-		DZA65_RS21975	0.32	-0.7
4,752,309	-		DZA65_RS21975	0.32	+1.3
4,752,309	-		DZA65_RS21975	0.32	-1.6
4,752,309	-		DZA65_RS21975	0.32	+0.9
4,752,309	-		DZA65_RS21975	0.32	+1.4
4,752,309	-		DZA65_RS21975	0.32	-1.5
4,752,309	-		DZA65_RS21975	0.32	+2.1
4,752,422	+		DZA65_RS21975	0.76	-1.7
4,752,423	-		DZA65_RS21975	0.76	-0.7
4,752,423	-		DZA65_RS21975	0.76	+0.5
4,752,434	+		DZA65_RS21975	0.80	+1.6
4,752,434	+		DZA65_RS21975	0.80	-0.4
4,752,434	+		DZA65_RS21975	0.80	+0.1
4,752,434	+		DZA65_RS21975	0.80	+2.1
4,752,435	-		DZA65_RS21975	0.81	+0.8
4,752,435	-		DZA65_RS21975	0.81	-1.5
4,752,435	-		DZA65_RS21975	0.81	+0.4
4,752,435	-		DZA65_RS21975	0.81	+0.2
4,752,435	-		DZA65_RS21975	0.81	+0.5
4,752,435	-		DZA65_RS21975	0.81	+1.6
4,752,435	-		DZA65_RS21975	0.81	+0.5
4,752,435	-		DZA65_RS21975	0.81	-0.2
4,752,478	+				+2.4
4,752,478	+				-0.3
4,752,478	+				+0.8
4,752,478	+				-1.9
4,752,478	+				+0.6
4,752,478	+				-0.2
4,752,478	+				+0.3
4,752,479	-				+0.4
4,752,479	-				+0.5
4,752,479	-				+0.3
4,752,479	-				-0.9
4,752,479	-				+0.8
4,752,479	-				-0.3
4,752,482	+				+0.6
4,752,482	+				-0.9
4,752,482	+				+0.2
4,752,482	+				+2.8
4,752,482	+				+0.7
4,752,482	+				+0.3
4,752,482	+				-0.9
4,752,482	+				+0.7
4,752,482	+				+4.5
4,752,483	-				-0.3
4,752,483	-				+0.5
4,752,483	-				+2.2
4,752,483	-				-0.8
4,752,483	-				-1.3
4,752,483	-				+0.4
4,752,483	-				-0.7
4,752,483	-				-0.9
4,752,483	-				+1.9
4,752,483	-				+1.1
4,752,507	+				+0.1
4,752,550	+				-1.0
4,752,551	-				-0.5
4,752,576	+				-0.2
4,752,576	+				+1.3
4,752,576	+				-0.5
4,752,576	+				-0.1
4,752,576	+				-0.5
4,752,576	+				-0.4
4,752,577	-				+0.2
4,752,577	-				-1.1
4,752,577	-				-1.7
4,752,580	+				+1.1
4,752,603	+				-1.1
4,752,603	+				-0.5
4,752,603	+				+1.6
4,752,603	+				-0.6
4,752,603	+				-0.5
4,752,603	+				+0.6
4,752,603	+				+0.4
4,752,604	-				+1.2
4,752,604	-				-0.7
4,752,604	-				-0.9
4,752,723	+		DZA65_RS21980	0.21	-0.3
4,752,723	+		DZA65_RS21980	0.21	-0.1
4,752,723	+		DZA65_RS21980	0.21	-1.7
4,752,723	+		DZA65_RS21980	0.21	-0.3
4,752,724	-		DZA65_RS21980	0.21	+0.5
4,752,724	-		DZA65_RS21980	0.21	-0.4
4,752,724	-		DZA65_RS21980	0.21	-1.5
4,752,724	-		DZA65_RS21980	0.21	-0.0
4,752,724	-		DZA65_RS21980	0.21	+2.0
4,752,724	-		DZA65_RS21980	0.21	+0.5
4,752,774	+		DZA65_RS21980	0.29	-0.3
4,752,774	+		DZA65_RS21980	0.29	+0.7
4,752,774	+		DZA65_RS21980	0.29	+0.2
4,752,774	+		DZA65_RS21980	0.29	-1.8
4,752,774	+		DZA65_RS21980	0.29	+0.3
4,752,775	-		DZA65_RS21980	0.29	-0.1
4,752,775	-		DZA65_RS21980	0.29	+0.8
4,752,775	-		DZA65_RS21980	0.29	-0.1
4,752,775	-		DZA65_RS21980	0.29	+0.6
4,752,775	-		DZA65_RS21980	0.29	+2.8
4,752,963	+		DZA65_RS21980	0.56	+0.3
4,752,963	+		DZA65_RS21980	0.56	-2.3
4,752,964	-		DZA65_RS21980	0.56	+0.6
4,752,982	+		DZA65_RS21980	0.58	-0.5