Strain Fitness in Dickeya dianthicola ME23

Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20975

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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Per-strain Table

Position	Strand	LocusTag	Fraction	Atlantic
				remove
4,533,603	+	DZA65_RS20970	0.55	+0.7
4,533,603	+	DZA65_RS20970	0.55	-1.1
4,533,603	+	DZA65_RS20970	0.55	+3.0
4,533,603	+	DZA65_RS20970	0.55	-0.7
4,533,604	-	DZA65_RS20970	0.55	+2.8
4,533,648	-	DZA65_RS20970	0.60	-0.6
4,533,694	+	DZA65_RS20970	0.64	+0.3
4,533,694	+	DZA65_RS20970	0.64	+1.9
4,533,745	+	DZA65_RS20970	0.69	+1.7
4,533,746	-	DZA65_RS20970	0.70	-1.0
4,533,746	-	DZA65_RS20970	0.70	+2.6
4,533,746	-	DZA65_RS20970	0.70	+0.3
4,533,746	-	DZA65_RS20970	0.70	+2.2
4,533,767	-	DZA65_RS20970	0.72	+1.7
4,533,901	+	DZA65_RS20970	0.85	-2.0
4,533,974	-			-0.1
4,534,085	-			+0.0
4,534,087	+			+0.4
4,534,107	+			-0.2
4,534,107	+			-0.5
4,534,108	-			+0.0
4,534,108	-			-0.5
4,534,111	+			+0.4
4,534,112	-			-1.0
4,534,126	+			-1.2
4,534,127	-			-1.0
4,534,128	+			+0.3
4,534,128	+			-0.1
4,534,159	+			-0.1
4,534,160	-			+0.8
4,534,160	-			-0.1
4,534,166	+			+0.2
4,534,171	+			-0.8
4,534,201	-			-0.6
4,534,225	-			+1.0
4,534,226	+			-0.4
4,534,226	+			-2.3
4,534,226	+			+1.1
4,534,226	+			+0.3
4,534,227	-			+1.0
4,534,227	-			-2.6
4,534,227	-			+0.4
4,534,238	-			-0.4
4,534,256	+			-1.8
4,534,256	+			-0.5
4,534,259	+			-0.8
4,534,290	+			-0.5
4,534,294	+			+1.0
4,534,313	+			+0.7
4,534,314	-			-1.5
4,534,325	+			-0.4
4,534,326	-			+0.0
4,534,326	-			-0.4
4,534,426	-			+1.4
4,534,426	-			+0.5
4,534,426	-			-2.0
4,534,426	-			-1.0
4,534,460	+			-0.4
4,534,475	+			-0.3
4,534,475	+			-0.4
4,534,475	+			-0.3
4,534,475	+			-0.5
4,534,475	+			+0.6
4,534,476	-			-1.0
4,534,476	-			-0.4
4,534,476	-			+0.0
4,534,476	-			-0.8
4,534,476	-			+0.3
4,534,477	+			-1.3
4,534,477	+			-0.8
4,534,477	+			+0.5
4,534,477	+			+0.9
4,534,478	-			-0.2
4,534,478	-			-1.4
4,534,478	-			+0.0
4,534,478	-			-0.1
4,534,478	-			-0.2
4,534,479	+			+0.3
4,534,484	+			+0.7
4,534,485	-			-1.8
4,534,488	+			-1.5
4,534,489	-			-1.1
4,534,489	-			-0.5
4,534,551	+			-0.0
4,534,552	-			-2.1
4,534,557	+			-0.5
4,534,557	+			-0.5
4,534,557	+			-1.7
4,534,557	+			+1.2
4,534,558	-			-0.7
4,534,558	-			+0.3
4,534,558	-			-0.1
4,534,558	-			+0.1
4,534,558	-			-0.5
4,534,560	+			-0.2
4,534,561	-			+1.3
4,534,561	-			+1.1
4,534,566	+			-0.1
4,534,567	-			+0.8
4,534,579	+			+0.5
4,534,579	+			+0.5
4,534,579	+			-0.2
4,534,580	-			-0.2
4,534,580	-			+1.8
4,534,653	+	DZA65_RS20975	0.13	-1.3
4,534,654	-	DZA65_RS20975	0.13	+1.8
4,534,701	+	DZA65_RS20975	0.19	-0.1
4,534,701	+	DZA65_RS20975	0.19	+0.8
4,534,722	+	DZA65_RS20975	0.21	-0.3
4,534,723	-	DZA65_RS20975	0.21	-0.3
4,534,737	+	DZA65_RS20975	0.23	+1.9
4,534,737	+	DZA65_RS20975	0.23	+1.1
4,534,738	-	DZA65_RS20975	0.23	+0.0
4,534,738	-	DZA65_RS20975	0.23	-0.3
4,534,764	+	DZA65_RS20975	0.26	+0.0
4,534,765	-	DZA65_RS20975	0.26	-0.3
4,534,770	+	DZA65_RS20975	0.27	-0.4
4,534,771	-	DZA65_RS20975	0.27	+0.6
4,534,782	+	DZA65_RS20975	0.29	+2.5
4,534,783	-	DZA65_RS20975	0.29	-1.0
4,534,783	-	DZA65_RS20975	0.29	+0.2
4,534,783	-	DZA65_RS20975	0.29	-0.9
4,534,783	-	DZA65_RS20975	0.29	+1.0
4,534,834	+	DZA65_RS20975	0.35	+2.6
4,534,834	+	DZA65_RS20975	0.35	+0.5
4,534,834	+	DZA65_RS20975	0.35	-1.5
4,534,834	+	DZA65_RS20975	0.35	-0.3
4,534,834	+	DZA65_RS20975	0.35	-1.0
4,534,834	+	DZA65_RS20975	0.35	+1.0
4,534,834	+	DZA65_RS20975	0.35	+1.0
4,534,834	+	DZA65_RS20975	0.35	-0.8
4,534,835	-	DZA65_RS20975	0.35	+0.1
4,534,835	-			+0.0
4,534,835	-	DZA65_RS20975	0.35	-1.0
4,534,860	+	DZA65_RS20975	0.38	+1.3
4,534,860	+	DZA65_RS20975	0.38	-0.4
4,534,861	-	DZA65_RS20975	0.38	-1.0
4,534,861	-	DZA65_RS20975	0.38	-2.3
4,534,861	-	DZA65_RS20975	0.38	+0.0
4,534,861	-	DZA65_RS20975	0.38	-0.1
4,534,939	+	DZA65_RS20975	0.48	-0.3
4,534,939	+	DZA65_RS20975	0.48	-1.5
4,534,939	+	DZA65_RS20975	0.48	+0.3
4,534,939	+	DZA65_RS20975	0.48	-0.6
4,534,939	+	DZA65_RS20975	0.48	+0.8
4,534,939	+	DZA65_RS20975	0.48	-2.3
4,534,939	+	DZA65_RS20975	0.48	-0.3
4,534,939	+	DZA65_RS20975	0.48	+0.8
4,534,939	+	DZA65_RS20975	0.48	-0.2
4,534,939	+	DZA65_RS20975	0.48	-0.2
4,534,939	+	DZA65_RS20975	0.48	+0.5
4,534,939	+	DZA65_RS20975	0.48	-0.3
4,534,939	+	DZA65_RS20975	0.48	-2.0
4,534,939	+	DZA65_RS20975	0.48	-0.2
4,534,939	+	DZA65_RS20975	0.48	-0.3
4,534,939	+	DZA65_RS20975	0.48	+3.4
4,534,939	+	DZA65_RS20975	0.48	+0.6
4,534,939	+	DZA65_RS20975	0.48	-2.3
4,534,939	+	DZA65_RS20975	0.48	+1.4
4,534,939	+	DZA65_RS20975	0.48	+1.6
4,534,939	+	DZA65_RS20975	0.48	+0.0
4,534,939	+	DZA65_RS20975	0.48	+0.7
4,534,940	-	DZA65_RS20975	0.48	+0.6
4,534,940	-	DZA65_RS20975	0.48	+1.5
4,534,940	-	DZA65_RS20975	0.48	+0.5
4,534,940	-	DZA65_RS20975	0.48	-2.7
4,534,940	-	DZA65_RS20975	0.48	-0.0
4,534,940	-	DZA65_RS20975	0.48	-0.2
4,534,940	-	DZA65_RS20975	0.48	-1.3
4,534,940	-	DZA65_RS20975	0.48	-1.2
4,534,940	-	DZA65_RS20975	0.48	+1.0
4,534,940	-	DZA65_RS20975	0.48	+0.0
4,534,941	+	DZA65_RS20975	0.48	-0.7
4,534,941	+	DZA65_RS20975	0.48	-0.0
4,534,942	-	DZA65_RS20975	0.49	-1.1
4,534,942	-	DZA65_RS20975	0.49	+1.4
4,534,942	-	DZA65_RS20975	0.49	+0.6
4,535,017	+	DZA65_RS20975	0.58	-0.0
4,535,017	+	DZA65_RS20975	0.58	-0.3
4,535,017	+	DZA65_RS20975	0.58	+0.7
4,535,017	+	DZA65_RS20975	0.58	+1.9
4,535,018	-	DZA65_RS20975	0.58	+0.2
4,535,088	+	DZA65_RS20975	0.67	-1.3
4,535,088	+	DZA65_RS20975	0.67	-2.5
4,535,088	+	DZA65_RS20975	0.67	+1.4
4,535,089	-	DZA65_RS20975	0.67	+2.2
4,535,089	-	DZA65_RS20975	0.67	+2.5
4,535,089	-	DZA65_RS20975	0.67	+0.6
4,535,175	+	DZA65_RS20975	0.77	+0.0
4,535,175	+	DZA65_RS20975	0.77	+0.3
4,535,175	+	DZA65_RS20975	0.77	+1.3
4,535,175	+	DZA65_RS20975	0.77	+0.3
4,535,176	-	DZA65_RS20975	0.78	+1.0
4,535,197	+	DZA65_RS20975	0.80	-0.1
4,535,197	+	DZA65_RS20975	0.80	+1.0
4,535,197	+	DZA65_RS20975	0.80	+1.9
4,535,198	-	DZA65_RS20975	0.80	-0.4
4,535,198	-	DZA65_RS20975	0.80	-2.5
4,535,198	-	DZA65_RS20975	0.80	+0.7
4,535,344	-			+0.5
4,535,353	+			-1.8
4,535,353	+			-1.1
4,535,353	+			+1.4
4,535,353	+			-1.0
4,535,354	-			-0.3
4,535,354	-			-0.5
4,535,354	-			+0.2
4,535,354	-			-1.1
4,535,354	-			+0.4
4,535,381	+			-0.4
4,535,381	+			-1.3
4,535,382	-			-0.3
4,535,382	-			-0.2
4,535,382	-			+1.2
4,535,382	-			+0.6
4,535,382	-			+0.2
4,535,382	-			+0.7
4,535,382	-			-0.1
4,535,382	-			+0.9
4,535,382	-			-0.1
4,535,383	+			-1.8
4,535,383	+			+0.3
4,535,383	+			-0.7
4,535,383	+			+0.5
4,535,383	+			-1.0
4,535,383	+			+1.4
4,535,384	-			-0.3
4,535,384	-			-0.8
4,535,384	-			-0.4
4,535,384	-			+0.2
4,535,384	-			+0.1
4,535,384	-			+1.0
4,535,384	-			+1.6
4,535,384	-			+0.5
4,535,384	-			-0.9
4,535,384	-			+1.0
4,535,541	+			-0.1
4,535,541	+			-0.3
4,535,541	+			+0.5
4,535,542	-			-0.5
4,535,542	-			-0.7
4,535,552	+			-0.7
4,535,552	+			-0.2
4,535,553	-			+3.7
4,535,575	+			-2.2
4,535,575	+			+0.6
4,535,575	+			+3.0
4,535,576	-			+0.0
4,535,590	+			-0.8
4,535,591	-			+1.8
4,535,591	-			-1.5
4,535,591	-			+0.5
4,535,604	-			-0.2
4,535,646	+			-1.1
4,535,647	-			-0.7
4,535,647	-			+0.4
4,535,647	-			+0.9
4,535,647	-			+1.3
4,535,692	-			-2.0
4,535,698	+			+0.7
4,535,702	+			+0.6
4,535,702	+			-1.5
4,535,715	-			+0.8
4,535,722	-			-1.5
4,535,748	-			-0.8
4,535,748	-			+0.8
4,535,761	-			+1.5
4,535,789	+			-1.9
4,535,793	+			-0.8
4,535,793	+			-0.3
4,535,844	-			-2.5
4,535,872	-			-1.8
4,535,872	-			-0.6
4,535,882	+			-1.3
4,535,953	+			-0.4
4,535,954	-			+0.8
4,536,006	+			+0.0
4,536,054	-			+0.1
4,536,054	-			-0.8
4,536,057	+			-1.5
4,536,058	-			+0.2
4,536,105	+			-1.3
4,536,129	+			+0.0
4,536,135	-			+0.2
4,536,154	+			+0.3
4,536,170	-			-0.7
4,536,235	-			-0.5
4,536,235	-			-0.3
4,536,305	+			+0.6
4,536,352	-			-0.7

Or see this region's nucleotide sequence