Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20230

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,382,112	+		DZA65_RS20225	0.45	+1.1
4,382,184	+		DZA65_RS20225	0.51	-0.0
4,382,184	+		DZA65_RS20225	0.51	-3.2
4,382,184	+		DZA65_RS20225	0.51	+0.2
4,382,184	+		DZA65_RS20225	0.51	-1.3
4,382,184	+		DZA65_RS20225	0.51	+0.2
4,382,184	+		DZA65_RS20225	0.51	-0.0
4,382,184	+		DZA65_RS20225	0.51	+2.0
4,382,185	-		DZA65_RS20225	0.51	+2.1
4,382,185	-		DZA65_RS20225	0.51	+0.0
4,382,185	-		DZA65_RS20225	0.51	-1.9
4,382,185	-		DZA65_RS20225	0.51	+1.5
4,382,185	-		DZA65_RS20225	0.51	-0.6
4,382,185	-		DZA65_RS20225	0.51	-2.5
4,382,185	-		DZA65_RS20225	0.51	+0.1
4,382,185	-		DZA65_RS20225	0.51	+0.7
4,382,185	-		DZA65_RS20225	0.51	+0.1
4,382,185	-		DZA65_RS20225	0.51	+1.4
4,382,234	+		DZA65_RS20225	0.54	-0.9
4,382,234	+		DZA65_RS20225	0.54	-0.3
4,382,234	+		DZA65_RS20225	0.54	+0.5
4,382,234	+		DZA65_RS20225	0.54	-0.7
4,382,234	+		DZA65_RS20225	0.54	+0.4
4,382,234	+		DZA65_RS20225	0.54	+1.5
4,382,235	-		DZA65_RS20225	0.55	-1.2
4,382,235	-		DZA65_RS20225	0.55	-0.8
4,382,235	-		DZA65_RS20225	0.55	-1.7
4,382,821	+				+1.6
4,382,821	+				-0.0
4,382,821	+				+0.1
4,382,822	-				-0.8
4,382,870	+				+0.4
4,382,870	+				-0.4
4,382,870	+				+0.4
4,382,894	+				+1.5
4,382,894	+				+0.8
4,382,894	+				-0.9
4,382,894	+				+0.6
4,382,894	+				-0.3
4,382,894	+				-0.1
4,382,895	-				-0.6
4,382,895	-				-0.3
4,382,895	-				+0.5
4,382,895	-				+0.1
4,382,895	-				+0.6
4,382,895	-				-0.0
4,382,895	-				+1.0
4,382,895	-				+0.2
4,382,896	+				-0.8
4,382,915	-				-0.8
4,382,945	+				-0.9
4,382,945	+				+0.1
4,382,945	+				+0.2
4,382,946	-				-1.6
4,382,946	-				-0.9
4,382,946	-				-0.6
4,382,946	-				-0.2
4,383,008	+				-1.0
4,383,008	+				-1.4
4,383,008	+				-0.7
4,383,008	+				+2.9
4,383,008	+				+1.7
4,383,008	+				+1.4
4,383,008	+				-0.0
4,383,008	+				-0.0
4,383,009	-				-0.5
4,383,009	-				-1.0
4,383,009	-				-0.6
4,383,009	-				-1.6
4,383,009	-				-0.2
4,383,009	-				+0.7
4,383,009	-				-0.2
4,383,009	-				-1.4
4,383,092	-				+0.7
4,383,092	-				-0.1
4,383,131	+		DZA65_RS20230	0.11	+0.1
4,383,132	-		DZA65_RS20230	0.11	+0.8
4,383,147	+		DZA65_RS20230	0.12	+0.2
4,383,256	-		DZA65_RS20230	0.19	-0.9
4,383,328	+		DZA65_RS20230	0.23	+1.0
4,383,328	+		DZA65_RS20230	0.23	-0.3
4,383,328	+		DZA65_RS20230	0.23	+0.7
4,383,329	-		DZA65_RS20230	0.23	+1.0
4,383,329	-		DZA65_RS20230	0.23	-1.3
4,383,440	+		DZA65_RS20230	0.30	-0.7
4,383,440	+		DZA65_RS20230	0.30	+1.9
4,383,440	+		DZA65_RS20230	0.30	+1.5
4,383,440	+		DZA65_RS20230	0.30	+0.3
4,383,441	-		DZA65_RS20230	0.30	+1.4
4,383,441	-		DZA65_RS20230	0.30	+0.7
4,383,458	+		DZA65_RS20230	0.31	+0.7
4,383,458	+		DZA65_RS20230	0.31	-0.8
4,383,458	+		DZA65_RS20230	0.31	-1.8
4,383,459	-		DZA65_RS20230	0.31	-0.2
4,383,459	-		DZA65_RS20230	0.31	+1.0
4,383,459	-		DZA65_RS20230	0.31	-2.0
4,383,459	-		DZA65_RS20230	0.31	+0.4
4,383,459	-		DZA65_RS20230	0.31	-0.3
4,383,469	+		DZA65_RS20230	0.32	-2.6
4,383,469	+		DZA65_RS20230	0.32	+1.6
4,383,469	+		DZA65_RS20230	0.32	+0.0
4,383,469	+		DZA65_RS20230	0.32	+1.0
4,383,469	+		DZA65_RS20230	0.32	+0.6
4,383,469	+		DZA65_RS20230	0.32	+1.6
4,383,469	+		DZA65_RS20230	0.32	-0.8
4,383,469	+		DZA65_RS20230	0.32	+1.3
4,383,469	+		DZA65_RS20230	0.32	-0.2
4,383,469	+		DZA65_RS20230	0.32	-0.0
4,383,470	-		DZA65_RS20230	0.32	+0.3
4,383,470	-		DZA65_RS20230	0.32	-0.1
4,383,470	-		DZA65_RS20230	0.32	+1.4
4,383,746	+				+0.4
4,383,746	+		DZA65_RS20230	0.49	-1.3
4,383,746	+		DZA65_RS20230	0.49	-1.3
4,383,747	-		DZA65_RS20230	0.49	-0.2
4,383,747	-		DZA65_RS20230	0.49	-2.6
4,383,747	-		DZA65_RS20230	0.49	+1.0
4,383,747	-		DZA65_RS20230	0.49	-1.5
4,383,747	-		DZA65_RS20230	0.49	-0.0
4,383,761	+		DZA65_RS20230	0.50	-1.3
4,383,761	+		DZA65_RS20230	0.50	+0.0
4,383,761	+		DZA65_RS20230	0.50	-1.0
4,383,761	+		DZA65_RS20230	0.50	+0.4
4,383,761	+		DZA65_RS20230	0.50	-0.5
4,383,761	+		DZA65_RS20230	0.50	-2.1
4,383,762	-		DZA65_RS20230	0.50	+1.0
4,383,762	-		DZA65_RS20230	0.50	-1.0
4,383,762	-		DZA65_RS20230	0.50	+0.4
4,383,762	-		DZA65_RS20230	0.50	-0.6
4,383,762	-		DZA65_RS20230	0.50	-0.3
4,383,762	-		DZA65_RS20230	0.50	+0.2
4,383,762	-		DZA65_RS20230	0.50	-0.0
4,383,762	-		DZA65_RS20230	0.50	-0.5
4,383,762	-		DZA65_RS20230	0.50	+1.7
4,383,815	+		DZA65_RS20230	0.53	-1.3
4,383,815	+		DZA65_RS20230	0.53	-0.6
4,383,816	-		DZA65_RS20230	0.53	+1.4
4,383,816	-		DZA65_RS20230	0.53	+0.7
4,383,816	-		DZA65_RS20230	0.53	+0.2
4,383,840	+				+3.0
4,383,841	-		DZA65_RS20230	0.54	-2.0
4,383,841	-		DZA65_RS20230	0.54	-2.5
4,384,034	+		DZA65_RS20230	0.66	-0.6
4,384,034	+		DZA65_RS20230	0.66	-0.2
4,384,035	-		DZA65_RS20230	0.66	-0.0
4,384,035	-		DZA65_RS20230	0.66	+0.5
4,384,035	-		DZA65_RS20230	0.66	-0.2
4,384,110	+		DZA65_RS20230	0.71	+1.0
4,384,110	+		DZA65_RS20230	0.71	+1.5
4,384,111	-		DZA65_RS20230	0.71	+1.2
4,384,335	+		DZA65_RS20230	0.84	-1.3
4,384,335	+		DZA65_RS20230	0.84	-0.8
4,384,335	+		DZA65_RS20230	0.84	+0.2
4,384,336	-		DZA65_RS20230	0.85	+0.5
4,384,336	-		DZA65_RS20230	0.85	-0.4
4,384,461	+				+1.3
4,384,461	+				+0.7
4,384,516	-				+0.4
4,384,533	+				-0.0
4,384,533	+				+1.5
4,384,533	+				-0.9
4,384,533	+				+0.2
4,384,533	+				+0.8
4,384,533	+				-2.6
4,384,533	+				+0.2
4,384,533	+				+1.2
4,384,533	+				+0.1
4,384,534	-				-0.6
4,384,534	-				-1.7
4,384,534	-				-0.4
4,384,534	-				-0.2
4,384,534	-				-0.7
4,384,534	-				-0.8
4,384,534	-				-0.9
4,384,540	-				-0.6
4,384,567	+				+1.0
4,384,568	-				-1.2
4,384,570	+				-0.9
4,384,570	+				+0.7
4,384,570	+				+0.4
4,384,571	-				+0.5
4,384,571	-				-0.6
4,384,571	-				-0.4
4,384,571	-				+0.5
4,384,571	-				-1.0
4,384,571	-				-0.8
4,384,571	-				+0.8
4,384,571	-				-1.8
4,384,611	-				+1.0
4,384,611	-				-0.3
4,384,665	+				-1.3
4,384,665	+				+0.1
4,384,665	+				+0.5
4,384,666	-				-0.2
4,384,695	+				-1.0
4,384,696	-				+0.3
4,384,696	-				-0.0
4,384,696	-				-2.0
4,384,696	-				-0.5
4,384,716	+				-1.3
4,384,716	+				+0.6
4,384,716	+				-0.3
4,384,716	+				-1.6
4,384,716	+				-0.5
4,384,716	+				-0.8
4,384,716	+				+1.8
4,384,716	+				+1.0
4,384,716	+				+0.8
4,384,716	+				+0.7
4,384,716	+				+0.1
4,384,717	-				+0.4
4,384,735	-				-0.2
4,384,735	-				-0.6
4,384,735	-				-1.8
4,384,735	-				-0.3
4,384,735	-				-0.8
4,384,738	+				-0.2
4,384,760	-				+1.7
4,384,766	+				-1.6
4,384,766	+				+0.7
4,384,767	-				-1.8
4,384,784	+				-0.0
4,384,784	+				+1.0
4,384,785	-				-1.0
4,384,785	-				+0.4
4,384,785	-				-2.2
4,384,785	-				-2.3
4,384,785	-				+0.5
4,384,785	-				-1.4
4,384,884	+				+1.0
4,384,968	+				-0.8
4,384,968	+				+1.3
4,384,968	+				-0.1
4,384,968	+				+3.7
4,384,968	+				-1.6
4,384,968	+				-0.0
4,384,969	-				-0.1
4,384,969	-				+0.4
4,384,969	-				-1.3
4,384,969	-				+0.8
4,384,969	-				-0.4
4,384,969	-				-1.0
4,384,969	-				-0.7
4,384,969	-				-1.0
4,384,969	-				-0.4
4,384,969	-				+0.1
4,384,969	-				-0.0
4,384,969	-				-0.8
4,384,969	-				-0.6
4,384,969	-				-2.0
4,384,969	-				-0.0
4,385,013	+				-1.8
4,385,013	+				-0.2
4,385,032	+				+0.1
4,385,086	+		DZA65_RS20235	0.14	+4.1
4,385,086	+		DZA65_RS20235	0.14	+1.6
4,385,087	-		DZA65_RS20235	0.14	-0.4
4,385,105	+		DZA65_RS20235	0.15	-0.6
4,385,106	-		DZA65_RS20235	0.15	-0.1
4,385,164	+		DZA65_RS20235	0.19	+0.1
4,385,164	+		DZA65_RS20235	0.19	-0.6
4,385,165	-		DZA65_RS20235	0.19	-0.1
4,385,187	+		DZA65_RS20235	0.20	+1.8
4,385,187	+		DZA65_RS20235	0.20	-1.3
4,385,187	+		DZA65_RS20235	0.20	-0.3
4,385,188	-		DZA65_RS20235	0.21	-1.8
4,385,216	-		DZA65_RS20235	0.22	-1.0
4,385,280	+		DZA65_RS20235	0.27	-2.0
4,385,280	+		DZA65_RS20235	0.27	+2.2
4,385,281	-		DZA65_RS20235	0.27	-0.6
4,385,281	-		DZA65_RS20235	0.27	+1.2
4,385,281	-		DZA65_RS20235	0.27	-1.5
4,385,281	-		DZA65_RS20235	0.27	-0.6
4,385,361	+		DZA65_RS20235	0.32	-0.2
4,385,501	+		DZA65_RS20235	0.42	-0.0
4,385,501	+		DZA65_RS20235	0.42	-0.6
4,385,502	-		DZA65_RS20235	0.42	-0.6
4,385,502	-		DZA65_RS20235	0.42	-0.2
4,385,587	-		DZA65_RS20235	0.48	-2.0
4,385,587	-		DZA65_RS20235	0.48	-1.3