Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS20135

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,362,127	+				-0.1
4,362,128	-				+0.6
4,362,128	-				-1.5
4,362,128	-				-2.0
4,362,132	+				+2.0
4,362,132	+				+0.5
4,362,213	+				-1.2
4,362,218	-				-2.5
4,362,242	-				+0.1
4,362,244	-				-0.3
4,362,276	-				-0.3
4,362,276	-				-0.3
4,362,346	+		DZA65_RS20130	0.14	+1.0
4,362,347	-		DZA65_RS20130	0.14	-0.5
4,362,710	-		DZA65_RS20130	0.57	-0.5
4,362,765	+		DZA65_RS20130	0.63	+0.7
4,362,800	-		DZA65_RS20130	0.67	-1.0
4,362,868	+		DZA65_RS20130	0.75	-1.0
4,362,869	-		DZA65_RS20130	0.75	-0.9
4,362,878	-		DZA65_RS20130	0.76	+1.3
4,362,936	+		DZA65_RS20130	0.83	+0.0
4,362,983	+		DZA65_RS20130	0.89	-0.1
4,362,983	+		DZA65_RS20130	0.89	+1.0
4,362,983	+		DZA65_RS20130	0.89	+1.3
4,362,983	+		DZA65_RS20130	0.89	+1.0
4,363,015	-				-0.2
4,363,041	-				-0.3
4,363,041	-				+0.6
4,363,048	+				+0.7
4,363,057	+				+0.7
4,363,081	+				+0.6
4,363,081	+				+1.6
4,363,081	+				-1.0
4,363,082	-				+1.5
4,363,082	-				-2.3
4,363,089	-				-1.6
4,363,096	-				+0.2
4,363,203	-		DZA65_RS20135	0.15	+1.7
4,363,288	-		DZA65_RS20135	0.25	+1.0
4,363,306	+		DZA65_RS20135	0.28	-0.2
4,363,306	+		DZA65_RS20135	0.28	-1.1
4,363,306	+		DZA65_RS20135	0.28	-0.2
4,363,306	+		DZA65_RS20135	0.28	+0.1
4,363,306	+		DZA65_RS20135	0.28	+1.0
4,363,306	+		DZA65_RS20135	0.28	+0.6
4,363,306	+		DZA65_RS20135	0.28	-2.0
4,363,306	+		DZA65_RS20135	0.28	+0.2
4,363,306	+		DZA65_RS20135	0.28	+1.4
4,363,306	+		DZA65_RS20135	0.28	-0.5
4,363,306	+		DZA65_RS20135	0.28	-0.0
4,363,307	-		DZA65_RS20135	0.28	+1.0
4,363,307	-		DZA65_RS20135	0.28	+1.9
4,363,307	-		DZA65_RS20135	0.28	-0.2
4,363,307	-		DZA65_RS20135	0.28	+2.1
4,363,307	-		DZA65_RS20135	0.28	+0.4
4,363,311	+		DZA65_RS20135	0.28	+0.1
4,363,311	+		DZA65_RS20135	0.28	-1.6
4,363,311	+		DZA65_RS20135	0.28	+0.1
4,363,311	+		DZA65_RS20135	0.28	-0.6
4,363,311	+		DZA65_RS20135	0.28	-1.2
4,363,311	+		DZA65_RS20135	0.28	+0.4
4,363,311	+		DZA65_RS20135	0.28	+1.3
4,363,311	+		DZA65_RS20135	0.28	+1.8
4,363,312	-		DZA65_RS20135	0.28	+2.8
4,363,312	-				-0.6
4,363,315	+		DZA65_RS20135	0.29	-0.0
4,363,315	+		DZA65_RS20135	0.29	+0.3
4,363,315	+		DZA65_RS20135	0.29	-0.2
4,363,316	-		DZA65_RS20135	0.29	+0.4
4,363,316	-		DZA65_RS20135	0.29	-0.2
4,363,356	+		DZA65_RS20135	0.34	+1.1
4,363,356	+		DZA65_RS20135	0.34	-1.0
4,363,357	-		DZA65_RS20135	0.34	-1.6
4,363,357	-		DZA65_RS20135	0.34	-1.9
4,363,357	-		DZA65_RS20135	0.34	+0.3
4,363,357	-		DZA65_RS20135	0.34	-0.0
4,363,357	-		DZA65_RS20135	0.34	+0.3
4,363,357	-		DZA65_RS20135	0.34	+1.1
4,363,461	+		DZA65_RS20135	0.46	-0.2
4,363,461	+		DZA65_RS20135	0.46	+1.0
4,363,462	-		DZA65_RS20135	0.46	-0.6
4,363,462	-		DZA65_RS20135	0.46	-0.3
4,363,486	+		DZA65_RS20135	0.49	+0.5
4,363,487	-		DZA65_RS20135	0.49	+1.4
4,363,487	-		DZA65_RS20135	0.49	+0.2
4,363,542	+		DZA65_RS20135	0.56	+1.1
4,363,641	+		DZA65_RS20135	0.68	+1.0
4,363,716	+		DZA65_RS20135	0.77	-1.8
4,363,716	+		DZA65_RS20135	0.77	-0.4
4,363,716	+		DZA65_RS20135	0.77	+0.6
4,363,716	+		DZA65_RS20135	0.77	+0.3
4,363,716	+		DZA65_RS20135	0.77	+0.1
4,363,716	+		DZA65_RS20135	0.77	-1.6
4,363,716	+		DZA65_RS20135	0.77	+0.8
4,363,716	+		DZA65_RS20135	0.77	+0.7
4,363,716	+		DZA65_RS20135	0.77	-0.6
4,363,716	+		DZA65_RS20135	0.77	-0.9
4,363,716	+		DZA65_RS20135	0.77	+1.0
4,363,716	+		DZA65_RS20135	0.77	-0.8
4,363,716	+		DZA65_RS20135	0.77	-1.3
4,363,717	-		DZA65_RS20135	0.77	+0.5
4,363,717	-		DZA65_RS20135	0.77	+0.1
4,363,717	-		DZA65_RS20135	0.77	+1.0
4,363,717	-		DZA65_RS20135	0.77	-0.2
4,363,717	-		DZA65_RS20135	0.77	-0.8
4,363,717	-		DZA65_RS20135	0.77	-0.0
4,363,717	-		DZA65_RS20135	0.77	+2.1
4,363,939	+				+0.2
4,363,939	+				+0.1
4,363,950	+				-0.0
4,363,950	+				+0.2
4,363,950	+				+0.6
4,363,950	+				+0.5
4,363,950	+				-0.5
4,363,950	+				+0.1
4,363,950	+				-1.5
4,363,950	+				+0.2
4,363,950	+				+3.3
4,363,950	+				-0.8
4,363,950	+				+0.5
4,363,950	+				-2.2
4,363,950	+				+1.6
4,363,950	+				+2.0
4,363,950	+				+0.4
4,363,951	-				+0.6
4,363,951	-				+0.5
4,363,951	-				+0.8
4,363,951	-				-1.6
4,363,951	-				+0.0
4,363,951	-				-0.5
4,363,951	-				+1.9
4,363,951	-				-0.0
4,363,951	-				-0.6
4,363,951	-				-0.8
4,363,951	-				-0.7
4,363,951	-				-1.6
4,363,987	-				+1.3
4,363,987	-				+1.1
4,364,002	-				-0.3
4,364,047	+				+0.3
4,364,058	-				+2.9
4,364,122	+				-0.3
4,364,122	+				-1.3
4,364,122	+				-2.5
4,364,122	+				-0.5
4,364,122	+				-1.2
4,364,122	+				+1.2
4,364,122	+				-2.0
4,364,122	+				-1.3
4,364,122	+				+0.2
4,364,122	+				+0.4
4,364,122	+				-1.2
4,364,122	+				+0.2
4,364,122	+				-1.3
4,364,122	+				-0.8
4,364,122	+				-0.2
4,364,122	+				-0.2
4,364,122	+				-1.8
4,364,122	+				-1.6
4,364,122	+				+1.4
4,364,122	+				-1.3
4,364,122	+				-0.3
4,364,122	+				+1.2
4,364,122	+				-1.6
4,364,122	+				-0.0
4,364,122	+				-0.0
4,364,122	+				-1.0
4,364,123	-				-0.4
4,364,123	-				-0.5
4,364,123	-				-0.6
4,364,123	-				+0.6
4,364,123	-				-2.3
4,364,123	-				-0.3
4,364,123	-				+0.1
4,364,123	-				+0.2
4,364,123	-				-0.2
4,364,123	-				-0.2
4,364,123	-				+0.3
4,364,123	-				-1.0
4,364,123	-				-1.6
4,364,123	-				+0.2
4,364,123	-				-1.0
4,364,123	-				-1.0
4,364,123	-				-0.3
4,364,123	-				+0.4
4,364,123	-				-0.5
4,364,123	-				+1.0
4,364,123	-				-0.0
4,364,123	-				+0.7
4,364,123	-				-2.6
4,364,123	-				-0.2
4,364,123	-				+1.3
4,364,123	-				-1.8
4,364,124	+				-1.3
4,364,124	+				-0.7
4,364,124	+				+1.0
4,364,124	+				-0.3
4,364,124	+				-0.0
4,364,124	+				+1.3
4,364,124	+				-0.3
4,364,125	-				-0.0
4,364,125	-				-0.0
4,364,125	-				+0.3
4,364,125	-				-1.0
4,364,125	-				+0.9
4,364,125	-				-0.5
4,364,125	-				+0.8
4,364,125	-				-1.8
4,364,125	-				-0.6
4,364,125	-				+1.7
4,364,125	-				-2.0
4,364,125	-				-0.5
4,364,125	-				+0.6
4,364,147	+				+1.4
4,364,147	+				+0.2
4,364,148	-				-0.1
4,364,162	+				+0.1
4,364,181	+		DZA65_RS20140	0.12	-1.2
4,364,315	+		DZA65_RS20140	0.61	-1.8
4,364,315	+		DZA65_RS20140	0.61	-0.5
4,364,316	-		DZA65_RS20140	0.61	-0.1
4,364,347	+		DZA65_RS20140	0.72	-0.7
4,364,347	+		DZA65_RS20140	0.72	-1.2
4,364,348	-		DZA65_RS20140	0.72	+0.2
4,364,348	-		DZA65_RS20140	0.72	+1.7
4,364,348	-		DZA65_RS20140	0.72	-1.5
4,364,352	-		DZA65_RS20140	0.74	-1.1
4,364,352	-		DZA65_RS20140	0.74	-0.8
4,364,367	+		DZA65_RS20140	0.79	-1.0
4,364,367	+		DZA65_RS20140	0.79	+0.2
4,364,367	+		DZA65_RS20140	0.79	+0.4
4,364,368	-		DZA65_RS20140	0.80	-0.0
4,364,421	+				+1.0
4,364,430	+				+2.0
4,364,430	+				+1.0
4,364,430	+				-0.2
4,364,430	+				+1.7
4,364,430	+				+1.0
4,364,431	-				+0.4
4,364,431	-				-2.3
4,364,431	-				-0.3
4,364,442	+				-0.6
4,364,442	+				+0.2
4,364,442	+				+0.4
4,364,443	-				-0.7
4,364,443	-				-0.1
4,364,443	-				+0.4
4,364,446	+				-1.8
4,364,446	+				-0.6
4,364,446	+				+0.8
4,364,446	+				-1.3
4,364,446	+				+1.0
4,364,446	+				+1.0
4,364,447	-				-0.0
4,364,447	-				+0.2
4,364,447	-				-1.0
4,364,447	-				-1.0
4,364,447	-				+0.6
4,364,461	+				-1.0
4,364,461	+				-2.3
4,364,461	+				+0.6
4,364,462	-				+0.1
4,364,462	-				+0.5
4,364,524	+				-0.0
4,364,524	+				-0.8
4,364,524	+				+1.7
4,364,525	-				-1.2
4,364,525	-				-1.6
4,364,525	-				+0.7
4,364,525	-				-1.0
4,364,528	+				-0.4
4,364,545	-				-1.0
4,364,580	+				-0.7
4,364,580	+				-0.0
4,364,580	+				+0.6
4,364,580	+				+0.4
4,364,580	+				-0.1
4,364,581	-				-1.0
4,364,581	-				-0.4
4,364,581	-				-0.7
4,364,581	-				-0.1
4,364,581	-				+0.1
4,364,581	-				+0.7
4,364,582	+				+0.8
4,364,582	+				-0.4
4,364,598	+				-0.2
4,364,599	-				-0.4
4,364,599	-				-1.6
4,364,604	-				-0.0
4,364,604	-				-1.1
4,364,604	-				-1.3
4,364,642	+				-1.2
4,364,642	+				+1.0
4,364,644	+				-1.1
4,364,644	+				+0.2
4,364,644	+				-0.2
4,364,644	+				+0.8
4,364,645	-				+0.6
4,364,645	-				-2.2
4,364,645	-				-0.2
4,364,645	-				-0.7
4,364,645	-				+1.0
4,364,645	-				-1.1
4,364,645	-				+0.1
4,364,645	-				+0.4
4,364,710	+				+1.0
4,364,711	-				-0.0
4,364,732	+				+1.6
4,364,733	-				-0.8
4,364,733	-				-0.2
4,364,798	+		DZA65_RS20145	0.72	-0.0
4,364,798	+		DZA65_RS20145	0.72	+2.6
4,364,810	+		DZA65_RS20145	0.88	-0.0
4,364,810	+		DZA65_RS20145	0.88	+2.6
4,364,810	+		DZA65_RS20145	0.88	+0.2
4,364,810	+		DZA65_RS20145	0.88	+0.2
4,364,842	+				-0.2
4,364,843	-				-0.6
4,364,843	-				-0.1
4,364,843	-				+1.0
4,364,843	-				-0.9
4,364,869	+				-0.2
4,364,869	+				-0.7
4,364,871	+				-0.2
4,364,872	-				-0.5
4,364,872	-				+0.2