Strain Fitness in Dickeya dianthicola ME23 around DZA65_RS19875

Experiment: Atlantic

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

Per-strain Table

Position	Strand	Gene	LocusTag	Fraction	Atlantic
4,298,861	+				-1.3
4,298,861	+				+0.6
4,298,862	-				-0.0
4,298,862	-				+0.8
4,298,862	-				-0.5
4,298,862	-				+0.4
4,298,871	+				-0.8
4,298,871	+				+0.2
4,298,872	-				-0.2
4,298,872	-				-0.3
4,298,970	-		DZA65_RS19870	0.15	-0.4
4,298,970	-		DZA65_RS19870	0.15	-2.6
4,299,050	+		DZA65_RS19870	0.24	-0.4
4,299,105	+		DZA65_RS19870	0.31	+1.7
4,299,105	+		DZA65_RS19870	0.31	-1.6
4,299,106	-		DZA65_RS19870	0.31	-0.6
4,299,106	-		DZA65_RS19870	0.31	-1.0
4,299,106	-		DZA65_RS19870	0.31	-0.0
4,299,139	-		DZA65_RS19870	0.35	-0.2
4,299,186	+		DZA65_RS19870	0.41	-1.4
4,299,186	+		DZA65_RS19870	0.41	+0.1
4,299,186	+		DZA65_RS19870	0.41	-0.2
4,299,186	+		DZA65_RS19870	0.41	+0.2
4,299,187	-		DZA65_RS19870	0.41	-2.5
4,299,187	-		DZA65_RS19870	0.41	-0.8
4,299,267	+		DZA65_RS19870	0.51	+0.7
4,299,323	-		DZA65_RS19870	0.58	+0.4
4,299,506	+		DZA65_RS19870	0.80	+2.0
4,299,506	+		DZA65_RS19870	0.80	+0.4
4,299,506	+		DZA65_RS19870	0.80	+1.1
4,299,507	-		DZA65_RS19870	0.80	-1.6
4,299,569	+		DZA65_RS19870	0.88	-0.8
4,299,569	+		DZA65_RS19870	0.88	+0.6
4,299,570	-		DZA65_RS19870	0.88	-0.4
4,299,570	-		DZA65_RS19870	0.88	+0.5
4,299,652	+				-0.2
4,299,666	+				-0.5
4,299,666	+				+1.0
4,299,666	+				+1.0
4,299,666	+				-0.0
4,299,666	+				-1.6
4,299,666	+				+1.1
4,299,667	-				-0.9
4,299,667	-				-0.6
4,299,667	-				+1.0
4,299,667	-				+2.1
4,299,667	-				+0.1
4,299,667	-				-0.4
4,299,671	+				+0.2
4,299,671	+				-0.6
4,299,671	+				+0.3
4,299,671	+				-0.9
4,299,671	+				-1.0
4,299,672	-				-0.4
4,299,672	-				-0.0
4,299,672	-				-0.5
4,299,679	+				-0.2
4,299,679	+				-0.3
4,299,679	+				-3.2
4,299,679	+				+0.2
4,299,679	+				+0.5
4,299,680	-				-0.8
4,299,680	-				+1.0
4,299,680	-				+1.0
4,299,680	-				-1.6
4,299,680	-				+0.3
4,299,680	-				+0.2
4,299,695	+				+1.3
4,299,696	-				+0.6
4,299,696	-				-0.9
4,299,813	+				+0.6
4,299,818	-				-0.4
4,299,848	-				-0.3
4,299,860	+				+1.0
4,299,860	+				-1.8
4,299,861	-				+3.0
4,299,891	+		DZA65_RS19875	0.12	+2.4
4,299,891	+		DZA65_RS19875	0.12	-1.0
4,299,892	-		DZA65_RS19875	0.12	-1.2
4,299,892	-		DZA65_RS19875	0.12	+1.8
4,299,953	+		DZA65_RS19875	0.26	+0.4
4,299,953	+		DZA65_RS19875	0.26	-0.5
4,299,954	-		DZA65_RS19875	0.26	+1.2
4,299,954	-		DZA65_RS19875	0.26	+3.4
4,300,245	+				-1.4
4,300,246	-				-0.5
4,300,246	-				+0.2
4,300,246	-				-1.4
4,300,246	-				-0.6
4,300,246	-				+1.0
4,300,246	-				-1.8
4,300,246	-				-0.3
4,300,261	+				+1.2
4,300,261	+				-0.6
4,300,261	+				-2.0
4,300,262	-				-0.0
4,300,262	-				+1.1
4,300,290	+				+0.2
4,300,290	+				-0.4
4,300,290	+				+0.3
4,300,330	+				+0.2
4,300,335	-				-0.0
4,300,372	+				-0.5
4,300,379	+				+0.1
4,300,380	-				+1.0
4,300,394	+				+0.6
4,300,394	+				-1.8
4,300,394	+				-0.3
4,300,394	+				-0.6
4,300,394	+				-0.1
4,300,394	+				-0.9
4,300,394	+				-1.4
4,300,394	+				-0.6
4,300,394	+				-0.4
4,300,394	+				-2.2
4,300,394	+				-0.5
4,300,394	+				-1.4
4,300,394	+				+0.5
4,300,394	+				+0.5
4,300,395	-				-2.2
4,300,395	-				+0.1
4,300,395	-				-1.0
4,300,395	-				-0.1
4,300,395	-				-0.8
4,300,395	-				-0.0
4,300,395	-				-0.3
4,300,395	-				+1.2
4,300,395	-				+0.1
4,300,395	-				-2.0
4,300,458	-		DZA65_RS19880	0.15	-0.7
4,300,461	-		DZA65_RS19880	0.15	-2.4
4,300,461	-		DZA65_RS19880	0.15	-0.0
4,300,461	-		DZA65_RS19880	0.15	-1.6
4,300,461	-		DZA65_RS19880	0.15	+0.0
4,300,461	-		DZA65_RS19880	0.15	-0.2
4,300,461	-		DZA65_RS19880	0.15	-0.4
4,300,506	-		DZA65_RS19880	0.25	-1.4
4,300,706	-		DZA65_RS19880	0.67	-0.5
4,300,706	-		DZA65_RS19880	0.67	+0.1
4,300,714	+		DZA65_RS19880	0.69	+1.3
4,300,714	+		DZA65_RS19880	0.69	-1.4
4,300,715	-		DZA65_RS19880	0.69	-0.1
4,300,715	-		DZA65_RS19880	0.69	+0.1
4,300,715	-		DZA65_RS19880	0.69	-2.5
4,300,748	-		DZA65_RS19880	0.76	+1.0
4,300,777	+		DZA65_RS19880	0.82	+1.0
4,300,828	-				+0.1
4,300,842	-				+0.2
4,300,887	-				-0.5
4,300,939	+				-1.7
4,300,995	+				+1.8
4,300,995	+				-0.4
4,300,995	+				+2.0
4,300,995	+				+0.5
4,300,995	+				-1.2
4,300,996	-				-0.1
4,300,996	-				+0.2
4,300,996	-				+0.1
4,301,001	+				-0.8
4,301,061	+				+0.2
4,301,061	+				-1.1
4,301,062	-				-0.6
4,301,077	+				+0.2
4,301,079	+				-0.0
4,301,079	+				+1.8
4,301,079	+				-3.4
4,301,079	+				-0.8
4,301,080	-				+0.4
4,301,080	-				-1.8
4,301,122	+				-0.9
4,301,122	+				-1.4
4,301,122	+				+0.1
4,301,122	+				-1.4
4,301,122	+				-1.6
4,301,122	+				-0.5
4,301,123	-				+1.1
4,301,188	+				-0.4
4,301,188	+				+0.6
4,301,188	+				-1.8
4,301,188	+				+0.4
4,301,189	-				-0.2
4,301,189	-				+0.1
4,301,189	-				-2.4
4,301,191	+				-1.5
4,301,191	+				-0.8
4,301,191	+				+0.1
4,301,191	+				-0.6
4,301,191	+				+1.0
4,301,191	+				-1.6
4,301,191	+				+0.2
4,301,191	+				+1.0
4,301,191	+				-0.4
4,301,192	-				+1.0
4,301,192	-				+0.2
4,301,192	-				-0.5
4,301,192	-				+0.2
4,301,192	-				+0.4
4,301,192	-				-2.4
4,301,192	-				+1.4
4,301,192	-				-0.3
4,301,192	-				+0.4
4,301,192	-				-0.5
4,301,192	-				+1.6
4,301,241	+		DZA65_RS19885	0.11	+1.0
4,301,241	+		DZA65_RS19885	0.11	-1.5
4,301,241	+		DZA65_RS19885	0.11	-1.0
4,301,241	+		DZA65_RS19885	0.11	-1.6
4,301,242	-		DZA65_RS19885	0.11	-0.4
4,301,242	-		DZA65_RS19885	0.11	+0.8