Experiment: Atlantic
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt DZA65_RS19290 and DZA65_RS19295 are separated by 1 nucleotides DZA65_RS19295 and DZA65_RS19300 are separated by 66 nucleotides DZA65_RS19300 and DZA65_RS19305 are separated by 179 nucleotides
DZA65_RS19290: DZA65_RS19290 - hypothetical protein, at 4,169,309 to 4,169,875
_RS19290
DZA65_RS19295: DZA65_RS19295 - hypothetical protein, at 4,169,877 to 4,170,644
_RS19295
DZA65_RS19300: DZA65_RS19300 - Hcp family type VI secretion system effector, at 4,170,711 to 4,171,190
_RS19300
DZA65_RS19305: DZA65_RS19305 - DNA polymerase II, at 4,171,370 to 4,173,742
_RS19305
Position (kb) 4170
4171
4172 Strain fitness (log2 ratio) -3
-2
-1
0
1
2
3 at 4169.775 kb on + strand, within DZA65_RS19290 at 4169.776 kb on - strand, within DZA65_RS19290 at 4169.887 kb on + strand at 4169.923 kb on + strand at 4169.924 kb on - strand at 4169.924 kb on - strand at 4169.966 kb on - strand, within DZA65_RS19295 at 4169.966 kb on - strand, within DZA65_RS19295 at 4169.968 kb on + strand, within DZA65_RS19295 at 4169.969 kb on - strand, within DZA65_RS19295 at 4169.971 kb on + strand, within DZA65_RS19295 at 4169.972 kb on - strand, within DZA65_RS19295 at 4170.005 kb on - strand, within DZA65_RS19295 at 4170.060 kb on + strand, within DZA65_RS19295 at 4170.073 kb on + strand, within DZA65_RS19295 at 4170.094 kb on - strand, within DZA65_RS19295 at 4170.168 kb on - strand, within DZA65_RS19295 at 4170.262 kb on - strand, within DZA65_RS19295 at 4170.292 kb on - strand, within DZA65_RS19295 at 4170.303 kb on - strand, within DZA65_RS19295 at 4170.359 kb on - strand, within DZA65_RS19295 at 4170.435 kb on - strand, within DZA65_RS19295 at 4170.465 kb on - strand, within DZA65_RS19295 at 4170.692 kb on + strand at 4170.783 kb on - strand, within DZA65_RS19300 at 4170.783 kb on - strand, within DZA65_RS19300 at 4170.788 kb on + strand, within DZA65_RS19300 at 4170.815 kb on - strand, within DZA65_RS19300 at 4170.815 kb on - strand, within DZA65_RS19300 at 4170.815 kb on - strand, within DZA65_RS19300 at 4170.892 kb on + strand, within DZA65_RS19300 at 4171.067 kb on - strand, within DZA65_RS19300 at 4171.103 kb on + strand, within DZA65_RS19300 at 4171.175 kb on - strand at 4171.223 kb on - strand at 4171.244 kb on + strand at 4171.272 kb on + strand at 4171.273 kb on - strand at 4171.273 kb on - strand at 4171.285 kb on + strand at 4171.316 kb on + strand at 4171.317 kb on - strand at 4171.318 kb on + strand at 4171.319 kb on - strand at 4171.321 kb on - strand at 4171.341 kb on + strand at 4171.341 kb on + strand at 4171.342 kb on - strand at 4171.342 kb on - strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.350 kb on + strand at 4171.351 kb on - strand at 4171.351 kb on - strand at 4171.351 kb on - strand at 4171.351 kb on - strand at 4171.351 kb on - strand at 4171.351 kb on - strand at 4171.401 kb on + strand at 4171.402 kb on - strand at 4171.402 kb on - strand at 4171.515 kb on + strand at 4171.548 kb on + strand at 4171.548 kb on + strand at 4171.548 kb on + strand at 4171.548 kb on + strand at 4171.549 kb on - strand at 4171.626 kb on - strand, within DZA65_RS19305 at 4171.637 kb on + strand, within DZA65_RS19305 at 4171.637 kb on + strand, within DZA65_RS19305 at 4171.638 kb on - strand, within DZA65_RS19305 at 4171.638 kb on - strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.691 kb on + strand, within DZA65_RS19305 at 4171.692 kb on - strand at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.692 kb on - strand, within DZA65_RS19305 at 4171.738 kb on + strand, within DZA65_RS19305 at 4171.739 kb on - strand, within DZA65_RS19305 at 4171.880 kb on + strand, within DZA65_RS19305 at 4171.881 kb on - strand, within DZA65_RS19305 at 4171.881 kb on - strand, within DZA65_RS19305 at 4171.881 kb on - strand, within DZA65_RS19305 at 4171.886 kb on - strand, within DZA65_RS19305 at 4171.917 kb on + strand, within DZA65_RS19305 at 4171.917 kb on + strand, within DZA65_RS19305 at 4171.917 kb on + strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.918 kb on - strand, within DZA65_RS19305 at 4171.921 kb on + strand at 4171.921 kb on + strand, within DZA65_RS19305 at 4171.921 kb on + strand, within DZA65_RS19305 at 4171.921 kb on + strand at 4171.921 kb on + strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.922 kb on - strand, within DZA65_RS19305 at 4171.976 kb on + strand, within DZA65_RS19305 at 4171.976 kb on + strand, within DZA65_RS19305 at 4171.976 kb on + strand, within DZA65_RS19305 at 4171.977 kb on - strand, within DZA65_RS19305
Per-strain Table
Position Strand Gene LocusTag Fraction Atlantic remove 4,169,775 + DZA65_RS19290 0.82 -2.2 4,169,776 - DZA65_RS19290 0.82 -2.8 4,169,887 + -0.2 4,169,923 + -0.2 4,169,924 - +0.5 4,169,924 - -1.9 4,169,966 - DZA65_RS19295 0.12 -0.1 4,169,966 - DZA65_RS19295 0.12 -0.4 4,169,968 + DZA65_RS19295 0.12 -0.9 4,169,969 - DZA65_RS19295 0.12 -2.3 4,169,971 + DZA65_RS19295 0.12 +0.2 4,169,972 - DZA65_RS19295 0.12 +0.1 4,170,005 - DZA65_RS19295 0.17 +1.9 4,170,060 + DZA65_RS19295 0.24 -1.5 4,170,073 + DZA65_RS19295 0.26 -0.1 4,170,094 - DZA65_RS19295 0.28 -1.0 4,170,168 - DZA65_RS19295 0.38 -0.5 4,170,262 - DZA65_RS19295 0.50 -0.2 4,170,292 - DZA65_RS19295 0.54 -2.6 4,170,303 - DZA65_RS19295 0.55 +2.9 4,170,359 - DZA65_RS19295 0.63 +0.4 4,170,435 - DZA65_RS19295 0.73 +1.1 4,170,465 - DZA65_RS19295 0.77 -0.3 4,170,692 + -0.8 4,170,783 - DZA65_RS19300 0.15 +0.9 4,170,783 - DZA65_RS19300 0.15 -0.1 4,170,788 + DZA65_RS19300 0.16 +1.5 4,170,815 - DZA65_RS19300 0.22 -1.4 4,170,815 - DZA65_RS19300 0.22 -0.5 4,170,815 - DZA65_RS19300 0.22 +0.3 4,170,892 + DZA65_RS19300 0.38 -1.7 4,171,067 - DZA65_RS19300 0.74 -0.3 4,171,103 + DZA65_RS19300 0.82 -0.5 4,171,175 - -0.2 4,171,223 - -0.8 4,171,244 + +0.0 4,171,272 + +0.6 4,171,273 - -0.5 4,171,273 - -0.2 4,171,285 + -0.1 4,171,316 + +0.2 4,171,317 - -0.3 4,171,318 + -1.1 4,171,319 - +0.7 4,171,321 - +1.0 4,171,341 + +1.2 4,171,341 + -0.7 4,171,342 - -0.6 4,171,342 - -1.9 4,171,350 + -0.7 4,171,350 + -0.9 4,171,350 + +0.6 4,171,350 + -0.7 4,171,350 + +1.1 4,171,350 + +0.9 4,171,350 + -1.7 4,171,351 - -0.3 4,171,351 - -0.1 4,171,351 - +0.4 4,171,351 - +0.9 4,171,351 - -0.9 4,171,351 - +1.8 4,171,401 + +0.2 4,171,402 - -0.0 4,171,402 - +1.3 4,171,515 + +1.1 4,171,548 + -0.1 4,171,548 + +0.9 4,171,548 + -1.7 4,171,548 + +1.3 4,171,549 - +0.9 4,171,626 - DZA65_RS19305 0.11 -0.4 4,171,637 + DZA65_RS19305 0.11 +0.2 4,171,637 + DZA65_RS19305 0.11 +3.2 4,171,638 - DZA65_RS19305 0.11 -0.7 4,171,638 - DZA65_RS19305 0.11 -0.3 4,171,691 + DZA65_RS19305 0.14 -0.1 4,171,691 + DZA65_RS19305 0.14 -1.1 4,171,691 + DZA65_RS19305 0.14 -0.1 4,171,691 + DZA65_RS19305 0.14 -0.8 4,171,691 + DZA65_RS19305 0.14 +0.6 4,171,691 + DZA65_RS19305 0.14 +2.3 4,171,692 - -0.1 4,171,692 - DZA65_RS19305 0.14 -2.4 4,171,692 - DZA65_RS19305 0.14 -0.3 4,171,692 - DZA65_RS19305 0.14 +0.2 4,171,692 - DZA65_RS19305 0.14 +0.0 4,171,692 - DZA65_RS19305 0.14 -0.1 4,171,692 - DZA65_RS19305 0.14 -0.4 4,171,738 + DZA65_RS19305 0.16 +1.1 4,171,739 - DZA65_RS19305 0.16 -1.1 4,171,880 + DZA65_RS19305 0.21 -0.7 4,171,881 - DZA65_RS19305 0.22 -2.6 4,171,881 - DZA65_RS19305 0.22 +0.4 4,171,881 - DZA65_RS19305 0.22 +0.4 4,171,886 - DZA65_RS19305 0.22 +1.5 4,171,917 + DZA65_RS19305 0.23 +0.3 4,171,917 + DZA65_RS19305 0.23 -0.5 4,171,917 + DZA65_RS19305 0.23 -0.1 4,171,918 - DZA65_RS19305 0.23 -0.7 4,171,918 - DZA65_RS19305 0.23 +0.5 4,171,918 - DZA65_RS19305 0.23 -0.0 4,171,918 - DZA65_RS19305 0.23 -0.9 4,171,918 - DZA65_RS19305 0.23 +0.2 4,171,918 - DZA65_RS19305 0.23 -1.0 4,171,918 - DZA65_RS19305 0.23 +0.3 4,171,921 + +0.3 4,171,921 + DZA65_RS19305 0.23 -2.1 4,171,921 + DZA65_RS19305 0.23 +0.9 4,171,921 + +0.9 4,171,921 + DZA65_RS19305 0.23 -0.5 4,171,922 - DZA65_RS19305 0.23 +0.1 4,171,922 - DZA65_RS19305 0.23 -0.5 4,171,922 - DZA65_RS19305 0.23 -0.2 4,171,922 - DZA65_RS19305 0.23 -0.1 4,171,922 - DZA65_RS19305 0.23 -1.0 4,171,922 - DZA65_RS19305 0.23 +0.1 4,171,922 - DZA65_RS19305 0.23 +1.6 4,171,922 - DZA65_RS19305 0.23 -0.5 4,171,976 + DZA65_RS19305 0.26 +0.5 4,171,976 + DZA65_RS19305 0.26 -0.7 4,171,976 + DZA65_RS19305 0.26 +0.3 4,171,977 - DZA65_RS19305 0.26 -1.1
Or see this region's nucleotide sequence